Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

68317861 .. 68319021

Gene Structure 1161 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33883

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGATGACATAAACACTTGTCACATTTGTTTCAAGAGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACAGTTCATCGTTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCATTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGGGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTCTGCCACCACTGTACAATATATACCAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTATTTGAGGTCACCATAAATCCAGATTCCCACCCGCAGTTGCAGGTTTTTCTGAAACAGGTTAGCTATCTCTTCGTTAAATTTTCTTTTTTATTGAACTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

175

Amino Acids

20.64

Weight (kDa)

6.36

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 163	2.7e-73	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccB7I	CCANNNNNTGG	1 cut(s)	373
AciI	CCGC	2 cut(s)	422, 458
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	41, 119, 329, 356
AfiI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	34, 109, 520
AjnI	CCWGG	1 cut(s)	366
AluBI	AGCT	2 cut(s)	199, 489
AluI	AGCT	2 cut(s)	199, 489
AoxI	GGCC	1 cut(s)	181
ApoI	RAATTY	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	55, 292
AsuHPI	GGTGA	1 cut(s)	427
AvaII	GGWCC	2 cut(s)	55, 292
BaeGI	GKGCMC	1 cut(s)	255
BccI	CCATC	1 cut(s)	238
BciT130I	CCWGG	1 cut(s)	368
BfaI	CTAG	1 cut(s)	303
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	1 cut(s)	457
BlpI	GCTNAGC	1 cut(s)	195
Bme1390I	CCNGG	1 cut(s)	368
Bme18I	GGWCC	2 cut(s)	55, 292
BmgT120I	GGNCC	2 cut(s)	55, 292
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	368
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 163, 373
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	368
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	10, 70
BseLI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BseMII	CTCAG	2 cut(s)	157, 186
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	255
BseYI	CCCAGC	1 cut(s)	248
BshFI	GGCC	1 cut(s)	183
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	2 cut(s)	327, 354
Bsp143I	GATC	1 cut(s)	220
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	2 cut(s)	422, 458
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	156, 187
BspLI	GGNNCC	1 cut(s)	293
BspMI	ACCTGC	1 cut(s)	457
BspTI	CTTAAG	1 cut(s)	158
BsrGI	TGTACA	2 cut(s)	327, 354
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	1 cut(s)	220
BssT1I	CCWWGG	1 cut(s)	178
Bst2UI	CCWGG	1 cut(s)	368
Bst4CI	ACNGT	4 cut(s)	88, 128, 332, 354
Bst6I	CTCTTC	1 cut(s)	500
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	2 cut(s)	327, 354
BstDEI	CTNAG	2 cut(s)	143, 195
BstEII	GGTNACC	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	10, 70
BstKTI	GATC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	220
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstNI	CCWGG	1 cut(s)	368
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	1 cut(s)	366
BstSLI	GKGCMC	1 cut(s)	255
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	10, 70
BtsIMutI	CAGTG	3 cut(s)	124, 337, 350
BveI	ACCTGC	1 cut(s)	457
Cfr13I	GGNCC	2 cut(s)	55, 292
Csp6I	GTAC	4 cut(s)	40, 118, 328, 355
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 269, 304
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	142, 183, 199, 248, 302, 489
CviKI_1	RGCY	6 cut(s)	142, 183, 199, 248, 302, 489
CviQI	GTAC	4 cut(s)	40, 118, 328, 355
DdeI	CTNAG	2 cut(s)	143, 195
DpnI	GATC	1 cut(s)	222
DpnII	GATC	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	55, 292
Eco57I	CTGAAG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	366
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	74
FaiI	YATR	7 cut(s)	11, 72, 270, 362, 364, 419, 440
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	17, 77
FspBI	CTAG	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	252
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	449
HphI	GGTGA	1 cut(s)	427
Hpy166II	GTNNAC	2 cut(s)	55, 316
Hpy188I	TCNGA	5 cut(s)	114, 220, 243, 396, 477
Hpy188III	TCNNGA	3 cut(s)	34, 404, 446
Hpy8I	GTNNAC	2 cut(s)	55, 316
HpyCH4III	ACNGT	4 cut(s)	88, 128, 332, 354
HpyCH4V	TGCA	2 cut(s)	74, 466
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	143, 195
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	1 cut(s)	220
MaeI	CTAG	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	20, 382, 433
MalI	GATC	1 cut(s)	222
MboI	GATC	1 cut(s)	220
MboII	GAAGA	1 cut(s)	487
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	2 cut(s)	323, 503
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	2 cut(s)	30, 424
MseI	TTAA	2 cut(s)	159, 501
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	368
MvaI	CCWGG	1 cut(s)	368
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	1 cut(s)	220
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	3 cut(s)	20, 382, 433
PfeI	GAWTC	1 cut(s)	449
PflMI	CCANNNNNTGG	1 cut(s)	373
Psp6I	CCWGG	1 cut(s)	366
PspEI	GGTNACC	1 cut(s)	433
PspFI	CCCAGC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	366
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	55, 292
RsaI	GTAC	4 cut(s)	41, 119, 329, 356
RsaNI	GTAC	4 cut(s)	40, 118, 328, 355
SaqAI	TTAA	2 cut(s)	159, 501
Sau3AI	GATC	1 cut(s)	220
Sau96I	GGNCC	2 cut(s)	55, 292
ScrFI	CCNGG	1 cut(s)	368
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	8 cut(s)	41, 48, 60, 201, 435, 471, 486, 491
SinI	GGWCC	2 cut(s)	55, 292
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	2 cut(s)	323, 503
SsiI	CCGC	2 cut(s)	422, 458
SspMI	CTAG	1 cut(s)	303
StyD4I	CCNGG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	4 cut(s)	88, 128, 332, 354
TasI	AATT	2 cut(s)	323, 503
TatI	WGTACW	3 cut(s)	117, 327, 354
TfiI	GAWTC	1 cut(s)	449
Tru1I	TTAA	2 cut(s)	159, 501
Tru9I	TTAA	2 cut(s)	159, 501
TscAI	CASTG	3 cut(s)	131, 337, 357
TseFI	GTSAC	3 cut(s)	20, 382, 433
Tsp45I	GTSAC	3 cut(s)	20, 382, 433
TspDTI	ATGAA	3 cut(s)	59, 80, 336
TspRI	CASTG	3 cut(s)	131, 337, 357
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	55, 292
XagI	CCTNNNNNAGG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	503
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.