Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00023

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

134027 .. 135767

Gene Structure 1741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G000820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGATGACATAAACACTTGTCACATTTGTTTCAAGAGGTACGAGCTGAATGTGAACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCGTTTTGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTTTGCCAGTAAATATCAGATTGGCTCCTTGCCTGATGCTCTGTTTTTATACTGCAGATGGCTGGGCACAGAATATCAAAATATGCTGCCACCACTATACAATATATACAAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCACTCGCAGTTGCAGGTTTATCTGAAACAGGTGGTATTAATCGGATTTTCTGCAGACATTGGATACTTATTAGGAGATCCACACGAGCATTGCAGGTCTGTCGAGAACAAGGAAATGCAGAACCTTCAAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

184

Amino Acids

21.63

Weight (kDa)

6.14

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 156	8.4e-49	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	424, 504
AciI	CCGC	1 cut(s)	389
AclWI	GGATC	1 cut(s)	491
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	2 cut(s)	41, 119
AfiI	CCNNNNNNNGG	1 cut(s)	163
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	3 cut(s)	34, 109, 548
AluBI	AGCT	2 cut(s)	46, 199
AluI	AGCT	2 cut(s)	46, 199
AlwI	GGATC	1 cut(s)	491
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	310
AseI	ATTAAT	1 cut(s)	458
BaeGI	GKGCMC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	503
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	276
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	502, 536
BciVI	GTATCC	1 cut(s)	476
BfmI	CTRYAG	2 cut(s)	277, 471
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	2 cut(s)	424, 504
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	1 cut(s)	311
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	312
BmiI	GGNNCC	1 cut(s)	250
BmsI	GCATC	1 cut(s)	250
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	508
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	10, 70
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMI	GCAATG	1 cut(s)	508
BseMII	CTCAG	2 cut(s)	157, 186
BseNI	ACTGG	1 cut(s)	231
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	297
BseYI	CCCAGC	1 cut(s)	286
BshFI	GGCC	1 cut(s)	183
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	2 cut(s)	220, 496
Bsp1720I	GCTNAGC	1 cut(s)	195
BspACI	CCGC	1 cut(s)	389
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	156, 187
BspLI	GGNNCC	1 cut(s)	250
BspMAI	CTGCAG	2 cut(s)	281, 475
BspMI	ACCTGC	2 cut(s)	424, 504
BspPI	GGATC	1 cut(s)	491
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	508
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	2 cut(s)	220, 496
BssSI	CACGAG	1 cut(s)	503
BssT1I	CCWWGG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	503
Bst4CI	ACNGT	1 cut(s)	128
BstAFI	CTTAAG	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	143, 195
BstEII	GGTNACC	1 cut(s)	400
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	10, 70
BstKTI	GATC	2 cut(s)	223, 499
BstMBI	GATC	2 cut(s)	220, 496
BstMWI	GCNNNNNNNGC	1 cut(s)	205
BstPI	GGTNACC	1 cut(s)	400
BstSFI	CTRYAG	2 cut(s)	277, 471
BstSLI	GKGCMC	1 cut(s)	293
BstV1I	GCAGC	1 cut(s)	297
BstX2I	RGATCY	1 cut(s)	496
BstYI	RGATCY	1 cut(s)	496
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	10, 70
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	2 cut(s)	424, 504
Csp6I	GTAC	2 cut(s)	40, 118
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	6 cut(s)	46, 142, 183, 199, 249, 286
CviKI_1	RGCY	6 cut(s)	46, 142, 183, 199, 249, 286
CviQI	GTAC	2 cut(s)	40, 118
DdeI	CTNAG	2 cut(s)	143, 195
DpnI	GATC	2 cut(s)	222, 498
DpnII	GATC	2 cut(s)	220, 496
Eco130I	CCWWGG	1 cut(s)	178
Eco57I	CTGAAG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	400
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	400
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	74
FaiI	YATR	9 cut(s)	11, 72, 274, 308, 322, 329, 331, 386, 407
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	17, 77
Fsp4HI	GCNGC	1 cut(s)	311
GluI	GCNGC	1 cut(s)	311
GsaI	CCCAGC	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	6 cut(s)	114, 220, 243, 363, 444, 464
Hpy188III	TCNNGA	4 cut(s)	34, 371, 413, 523
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	1 cut(s)	554
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	6 cut(s)	74, 279, 433, 473, 513, 538
HpyF10VI	GCNNNNNNNGC	1 cut(s)	205
HpyF3I	CTNAG	2 cut(s)	143, 195
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	2 cut(s)	220, 496
LmnI	GCTCC	1 cut(s)	254
LpnPI	CCDG	9 cut(s)	130, 149, 244, 270, 272, 419, 426, 434, 499
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	250
MaeIII	GTNAC	3 cut(s)	20, 349, 400
MalI	GATC	2 cut(s)	222, 498
MboI	GATC	2 cut(s)	220, 496
MflI	RGATCY	1 cut(s)	496
MhlI	GDGCHC	1 cut(s)	293
MnlI	CCTC	2 cut(s)	30, 391
MseI	TTAA	2 cut(s)	159, 458
MspA1I	CMGCKG	1 cut(s)	391
MspCI	CTTAAG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	205
NdeII	GATC	2 cut(s)	220, 496
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	2 cut(s)	20, 349
PfeI	GAWTC	1 cut(s)	416
PkrI	GCNGC	1 cut(s)	312
PshBI	ATTAAT	1 cut(s)	458
PspEI	GGTNACC	1 cut(s)	400
PspFI	CCCAGC	1 cut(s)	286
PspN4I	GGNNCC	1 cut(s)	250
PstI	CTGCAG	2 cut(s)	281, 475
PsuI	RGATCY	1 cut(s)	496
RsaI	GTAC	2 cut(s)	41, 119
RsaNI	GTAC	2 cut(s)	40, 118
SaqAI	TTAA	2 cut(s)	159, 458
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	2 cut(s)	220, 496
SduI	GDGCHC	1 cut(s)	293
SfaNI	GCATC	1 cut(s)	250
SfcI	CTRYAG	2 cut(s)	277, 471
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SsiI	CCGC	1 cut(s)	389
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	1 cut(s)	522
TatI	WGTACW	1 cut(s)	117
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	2 cut(s)	159, 458
Tru9I	TTAA	2 cut(s)	159, 458
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	20, 349
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	2 cut(s)	20, 349
TspDTI	ATGAA	2 cut(s)	59, 80
TspRI	CASTG	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	158
VspI	ATTAAT	1 cut(s)	458
XagI	CCTNNNNNAGG	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.