Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Reverse (-)

2063670 .. 2065435

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ35993

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTTTGACTATCATCGGCAACATGGGATAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAAGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTATGGTTGATACAGGTAAATGCAAGATTACCTTTCAGAAATAGGTCATATGAATTTGGGGGTTCTAGTAACAATGTTAGATTCAAGTCACTATATTTGAACTGTGGTTATTATAGTACAACTGCTGTATGTACGATGCCTTTTATATTTCTCAATTGTACTTATGTAATCTCTTATGTTAGACATCTTACCTGTCAGATTGTCAAACTAGCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

136

Amino Acids

15.95

Weight (kDa)

9.23

Isoelectric Point (pI)

35.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 71	9.1e-26	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	245
AfaI	GTAC	4 cut(s)	179, 310, 325, 352
AgsI	TTSAA	2 cut(s)	277, 292
AluBI	AGCT	2 cut(s)	49, 404
AluI	AGCT	2 cut(s)	49, 404
Alw21I	GWGCWC	1 cut(s)	105
AoxI	GGCC	1 cut(s)	31
ApoI	RAATTY	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	18
BfaI	CTAG	4 cut(s)	153, 258, 401, 405
BlpI	GCTNAGC	2 cut(s)	45, 99
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmsI	GCATC	1 cut(s)	318
Bpu1102I	GCTNAGC	2 cut(s)	45, 99
Bse1I	ACTGG	1 cut(s)	81
BseMII	CTCAG	2 cut(s)	36, 90
BseNI	ACTGG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	33
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	1 cut(s)	33
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	70
Bsp1720I	GCTNAGC	2 cut(s)	45, 99
BspANI	GGCC	1 cut(s)	33
BspCNI	CTCAG	2 cut(s)	37, 91
BspLI	GGNNCC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	182, 296
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	45, 99
BstKTI	GATC	1 cut(s)	73
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	33
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	4 cut(s)	178, 309, 324, 351
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	5 cut(s)	33, 49, 98, 152, 404
CviKI_1	RGCY	5 cut(s)	33, 49, 98, 152, 404
CviQI	GTAC	4 cut(s)	178, 309, 324, 351
DdeI	CTNAG	2 cut(s)	45, 99
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	142
FaeI	CATG	1 cut(s)	26
FalI	AAGNNNNNCTT	2 cut(s)	208, 240
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	1 cut(s)	22
FauNDI	CATATG	1 cut(s)	241
FspBI	CTAG	4 cut(s)	153, 258, 401, 405
HaeIII	GGCC	1 cut(s)	33
Hin1II	CATG	1 cut(s)	26
HinfI	GANTC	1 cut(s)	273
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	4 cut(s)	70, 93, 230, 390
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	182, 296
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	45, 99
Hsp92II	CATG	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	70
LpnPI	CCDG	3 cut(s)	94, 191, 397
LweI	GCATC	1 cut(s)	318
MaeI	CTAG	4 cut(s)	153, 258, 401, 405
MaeIII	GTNAC	2 cut(s)	260, 279
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MfeI	CAATTG	1 cut(s)	346
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	3 cut(s)	173, 245, 346
MmeI	TCCRAC	1 cut(s)	137
MseI	TTAA	1 cut(s)	409
MunI	CAATTG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	143
NmuCI	GTSAC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	273
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	4 cut(s)	179, 310, 325, 352
RsaNI	GTAC	4 cut(s)	178, 309, 324, 351
SaqAI	TTAA	1 cut(s)	409
Sau3AI	GATC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	6 cut(s)	51, 210, 226, 239, 386, 406
SfaNI	GCATC	1 cut(s)	318
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	3 cut(s)	173, 245, 346
SspMI	CTAG	4 cut(s)	153, 258, 401, 405
TaaI	ACNGT	2 cut(s)	182, 296
TasI	AATT	3 cut(s)	173, 245, 346
TatI	WGTACW	3 cut(s)	177, 308, 350
TfiI	GAWTC	1 cut(s)	273
Tru1I	TTAA	1 cut(s)	409
Tru9I	TTAA	1 cut(s)	409
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	279
Tsp45I	GTSAC	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	186, 258
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	142
XapI	RAATTY	1 cut(s)	245
XspI	CTAG	4 cut(s)	153, 258, 401, 405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.