Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

18492161 .. 18493193

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012406

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGAGATTCAAAGTCGTATGATCGAGCTCACCACCAAACTGAAGCAGGTTTTCTTTTACCCACTTTTCAGAGTCCAATGGCGGCTAAAACGTTCCAGTGGGTTTGGACAAGGAACAGTGGGTATGTATTTGGAACCTCTGTTTTCTATCGATTTGGCTGCAATCAATTTTGAGATAAAGCTGTATACAGATAATGGAAATGGATTGCCTTTTGGAGCTGCAAGAGGACTGTTATACCTTCATGAGCAGTGTGACCCGAAAGTTATCCACAGGGATGTGAAGGCAGCAAATGTACTTGATGACTACTGTGAAGCCGTAGTCGGAGATTTTGATTTGGCAAAGCTTTTGAATCACCAAGATTCACATGTTACCACTGCAGTGAGGGGTACCATAGGGCACATAGCTCCAGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

139

Amino Acids

15.51

Weight (kDa)

6.5

Isoelectric Point (pI)

36.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	74 - 136	6.6e-09	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	37
Acc65I	GGTACC	1 cut(s)	386
AccB1I	GGYRCC	1 cut(s)	386
AccI	GTMKAC	1 cut(s)	185
AciI	CCGC	1 cut(s)	82
AclI	AACGTT	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	62
AfaI	GTAC	2 cut(s)	294, 388
AflIII	ACRYGT	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	11, 349
AleI	CACNNNNGTG	1 cut(s)	377
AluBI	AGCT	5 cut(s)	28, 181, 218, 343, 404
AluI	AGCT	5 cut(s)	28, 181, 218, 343, 404
Alw21I	GWGCWC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	158, 218, 284
Asp718I	GGTACC	1 cut(s)	386
AsuHPI	GGTGA	2 cut(s)	22, 344
BaeGI	GKGCMC	1 cut(s)	399
BanI	GGYRCC	1 cut(s)	386
BanII	GRGCYC	1 cut(s)	30
Bbv12I	GWGCWC	1 cut(s)	30
BbvI	GCAGC	3 cut(s)	145, 205, 296
BceAI	ACGGC	1 cut(s)	299
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	37
BisI	GCNGC	4 cut(s)	83, 159, 219, 285
BlsI	GCNGC	4 cut(s)	84, 160, 220, 286
BmiI	GGNNCC	2 cut(s)	135, 388
BpmI	CTGGAG	1 cut(s)	390
Bsa29I	ATCGAT	1 cut(s)	150
Bse1I	ACTGG	2 cut(s)	96, 407
BseCI	ATCGAT	1 cut(s)	150
BseGI	GGATG	1 cut(s)	280
BseNI	ACTGG	2 cut(s)	96, 407
BseSI	GKGCMC	1 cut(s)	399
BseXI	GCAGC	3 cut(s)	145, 205, 296
BshNI	GGYRCC	1 cut(s)	386
BshVI	ATCGAT	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	30
Bsp1286I	GDGCHC	2 cut(s)	30, 399
Bsp143I	GATC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	150
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	2 cut(s)	135, 388
BspMAI	CTGCAG	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	37
BspT107I	GGYRCC	1 cut(s)	386
BsrI	ACTGG	2 cut(s)	96, 407
BssMI	GATC	1 cut(s)	21
BssNAI	GTATAC	1 cut(s)	186
Bst1107I	GTATAC	1 cut(s)	186
Bst4CI	ACNGT	3 cut(s)	118, 231, 308
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	21
BstNSI	RCATGY	1 cut(s)	368
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	399
BstV1I	GCAGC	3 cut(s)	145, 205, 296
BstZ17I	GTATAC	1 cut(s)	186
Bsu15I	ATCGAT	1 cut(s)	150
BsuTUI	ATCGAT	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	3 cut(s)	254, 372, 384
BtsIMutI	CAGTG	5 cut(s)	103, 123, 254, 372, 384
BveI	ACCTGC	1 cut(s)	37
CciI	TCATGA	1 cut(s)	241
ClaI	ATCGAT	1 cut(s)	150
Csp6I	GTAC	2 cut(s)	293, 387
CviAII	CATG	2 cut(s)	242, 365
CviJI	RGCY	8 cut(s)	28, 85, 158, 181, 218, 314, 343, 404
CviKI_1	RGCY	8 cut(s)	28, 85, 158, 181, 218, 314, 343, 404
CviQI	GTAC	2 cut(s)	293, 387
DpnI	GATC	1 cut(s)	23
DpnII	GATC	1 cut(s)	21
Ecl136II	GAGCTC	1 cut(s)	28
Eco24I	GRGCYC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	28
Eco57I	CTGAAG	1 cut(s)	62
EcoICRI	GAGCTC	1 cut(s)	28
EcoT38I	GRGCYC	1 cut(s)	30
FaeI	CATG	2 cut(s)	245, 368
FaiI	YATR	8 cut(s)	20, 125, 186, 235, 243, 366, 392, 401
FatI	CATG	2 cut(s)	241, 364
FblI	GTMKAC	1 cut(s)	185
Fnu4HI	GCNGC	4 cut(s)	83, 159, 219, 285
FokI	GGATG	1 cut(s)	287
FriOI	GRGCYC	1 cut(s)	30
Fsp4HI	GCNGC	4 cut(s)	83, 159, 219, 285
GluI	GCNGC	4 cut(s)	83, 159, 219, 285
GsuI	CTGGAG	1 cut(s)	390
Hin1II	CATG	2 cut(s)	245, 368
HindIII	AAGCTT	1 cut(s)	341
HinfI	GANTC	4 cut(s)	7, 72, 349, 359
HphI	GGTGA	2 cut(s)	22, 344
Hpy166II	GTNNAC	1 cut(s)	186
Hpy188I	TCNGA	3 cut(s)	71, 323, 416
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	186
HpyAV	CCTTC	2 cut(s)	248, 274
HpyCH4III	ACNGT	3 cut(s)	118, 231, 308
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	3 cut(s)	161, 221, 377
HpySE526I	ACGT	1 cut(s)	91
Hsp92II	CATG	2 cut(s)	245, 368
KpnI	GGTACC	1 cut(s)	390
Kzo9I	GATC	1 cut(s)	21
LmnI	GCTCC	2 cut(s)	215, 409
LpnPI	CCDG	3 cut(s)	32, 109, 256
Lsp1109I	GCAGC	3 cut(s)	145, 205, 296
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	251, 367
MalI	GATC	1 cut(s)	23
MboI	GATC	1 cut(s)	21
MhlI	GDGCHC	2 cut(s)	30, 399
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	1 cut(s)	81
MmeI	TCCRAC	1 cut(s)	301
MnlI	CCTC	3 cut(s)	147, 218, 375
MslI	CAYNNNNRTG	2 cut(s)	273, 377
NdeII	GATC	1 cut(s)	21
NlaIII	CATG	2 cut(s)	245, 368
NlaIV	GGNNCC	2 cut(s)	135, 388
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	368
OliI	CACNNNNGTG	1 cut(s)	377
PagI	TCATGA	1 cut(s)	241
PciI	ACATGT	1 cut(s)	364
PfeI	GAWTC	3 cut(s)	7, 349, 359
PkrI	GCNGC	4 cut(s)	84, 160, 220, 286
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PscI	ACATGT	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	30
Psp1406I	AACGTT	1 cut(s)	91
PspN4I	GGNNCC	2 cut(s)	135, 388
PstI	CTGCAG	1 cut(s)	379
RsaI	GTAC	2 cut(s)	294, 388
RsaNI	GTAC	2 cut(s)	293, 387
RseI	CAYNNNNRTG	2 cut(s)	273, 377
SacI	GAGCTC	1 cut(s)	30
SatI	GCNGC	4 cut(s)	83, 159, 219, 285
Sau3AI	GATC	1 cut(s)	21
SchI	GAGTC	1 cut(s)	81
SduI	GDGCHC	2 cut(s)	30, 399
SetI	ASST	9 cut(s)	30, 51, 94, 139, 183, 220, 240, 345, 406
SfcI	CTRYAG	1 cut(s)	375
SmiMI	CAYNNNNRTG	2 cut(s)	273, 377
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	1 cut(s)	82
SstI	GAGCTC	1 cut(s)	30
TaaI	ACNGT	3 cut(s)	118, 231, 308
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	2 cut(s)	24, 150
TasI	AATT	1 cut(s)	166
TatI	WGTACW	1 cut(s)	292
TauI	GCSGC	1 cut(s)	85
TfiI	GAWTC	3 cut(s)	7, 349, 359
TscAI	CASTG	5 cut(s)	103, 123, 254, 379, 384
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	3 cut(s)	158, 218, 284
Tsp45I	GTSAC	1 cut(s)	251
TspDTI	ATGAA	1 cut(s)	230
TspRI	CASTG	5 cut(s)	103, 123, 254, 379, 384
XceI	RCATGY	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.