FvH4_4g35700

AMP deaminase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0007505
Physical Location & Seq
Reverse (-)
32913946 .. 32916362
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g35700.t1

Sequence Viewer

Length: 597 bp
ATGAGAATCAACTTGGATTGCCCGGTAGTCATATTCAGAGATGGAAAACATCTTACACTTAAGGAAGTTTTTAAGAGTTTGGACTTGACAGGGTATGATCTGAATGTTGACTTATTGGATGTTCATGCGGATAAGACTACTTTTCATCGATTTGACAAGTTCAACCTGAAGTATAATCCATGTGGCCGGAGCAGTCTCAGAGAGATATTCTGGAAGCGAGACAATCTAATCCAAGTAACAAAGGAAGTTTTGAAAGATCTCGAAGCCATGAAATACCAGATGGCAGAGTACAGGATTTCAGTTTATGGGAGAAAACAAAGTGAGTGGGATCAACTGGCTAGTTGGTTTGTTAACAATGACATTTACAGCGAGAATGTAGTATGGTTAATACAGATCTATTATTATTACCCTTTCTCTGCTGTTACCGACAATGCAAAGAACTACAATGATCTTTGGTGGAATATTACAACGCCTATAGGTTTGAAACTAAATAATTTGATAAATGAGATACGACGCCAAAGATGTTCCTACCTTCGGGATGCTTTTCTTCTCTTATATCGTAGAAGACAAGAGCTTGAATGGCCTCTCATATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130
Pfam Domains
Protein Families
A_deaminase

Protein Analysis

199

Amino Acids

23.97

Weight (kDa)

8.57

Isoelectric Point (pI)

36.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP_deaminase PF19326 9 - 159 1.4e-62 AMP deaminase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 336
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 188
AcyI GRCGYC 1 cut(s) 514
AfaI GTAC 1 cut(s) 290
AfiI CCNNNNNNNGG 1 cut(s) 534
AflII CTTAAG 1 cut(s) 59
AgsI TTSAA 4 cut(s) 163, 253, 484, 578
AluBI AGCT 1 cut(s) 574
AluI AGCT 1 cut(s) 574
Alw26I GTCTC 2 cut(s) 200, 213
AlwI GGATC 1 cut(s) 336
AoxI GGCC 2 cut(s) 184, 581
AsuC2I CCSGG 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 571
BccI CCATC 2 cut(s) 35, 274
BcnI CCSGG 1 cut(s) 23
BcoDI GTCTC 2 cut(s) 200, 213
BfaI CTAG 1 cut(s) 339
BfmI CTRYAG 1 cut(s) 474
BfrI CTTAAG 1 cut(s) 59
BglII AGATCT 2 cut(s) 256, 393
Bme1390I CCNGG 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 529
BpiI GAAGAC 1 cut(s) 571
BpuMI CCSGG 1 cut(s) 23
Bsa29I ATCGAT 1 cut(s) 148
BsaHI GRCGYC 1 cut(s) 514
Bsc4I CCNNNNNNNGG 1 cut(s) 534
Bse1I ACTGG 1 cut(s) 339
BseCI ATCGAT 1 cut(s) 148
BseGI GGATG 2 cut(s) 124, 544
BseLI CCNNNNNNNGG 1 cut(s) 534
BseMII CTCAG 1 cut(s) 211
BseNI ACTGG 1 cut(s) 339
BshFI GGCC 2 cut(s) 186, 583
BshVI ATCGAT 1 cut(s) 148
BsiSI CCGG 2 cut(s) 23, 187
BslI CCNNNNNNNGG 1 cut(s) 534
BsmAI GTCTC 2 cut(s) 200, 213
BsnI GGCC 2 cut(s) 186, 583
Bsp143I GATC 5 cut(s) 97, 256, 328, 393, 448
BspACI CCGC 1 cut(s) 128
BspANI GGCC 2 cut(s) 186, 583
BspCNI CTCAG 1 cut(s) 210
BspDI ATCGAT 1 cut(s) 148
BspPI GGATC 1 cut(s) 336
BspTI CTTAAG 1 cut(s) 59
BsrI ACTGG 1 cut(s) 339
BssMI GATC 5 cut(s) 97, 256, 328, 393, 448
BssNI GRCGYC 1 cut(s) 514
BstACI GRCGYC 1 cut(s) 514
BstAFI CTTAAG 1 cut(s) 59
BstDEI CTNAG 1 cut(s) 197
BstF5I GGATG 2 cut(s) 124, 544
BstKTI GATC 5 cut(s) 100, 259, 331, 396, 451
BstMAI GTCTC 2 cut(s) 200, 213
BstMBI GATC 5 cut(s) 97, 256, 328, 393, 448
BstMWI GCNNNNNNNGC 1 cut(s) 580
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 474
BstV2I GAAGAC 1 cut(s) 571
BstX2I RGATCY 2 cut(s) 256, 393
BstYI RGATCY 2 cut(s) 256, 393
Bsu15I ATCGAT 1 cut(s) 148
BsuRI GGCC 2 cut(s) 186, 583
BsuTUI ATCGAT 1 cut(s) 148
BtsCI GGATG 2 cut(s) 124, 544
ClaI ATCGAT 1 cut(s) 148
CseI GACGC 1 cut(s) 522
Csp6I GTAC 1 cut(s) 289
CspCI CAANNNNNGTGG 2 cut(s) 305, 340
CviAII CATG 3 cut(s) 125, 180, 268
CviJI RGCY 5 cut(s) 186, 266, 338, 574, 583
CviKI_1 RGCY 5 cut(s) 186, 266, 338, 574, 583
CviQI GTAC 1 cut(s) 289
DdeI CTNAG 1 cut(s) 197
DpnI GATC 5 cut(s) 99, 258, 330, 395, 450
DpnII GATC 5 cut(s) 97, 256, 328, 393, 448
EaeI YGGCCR 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 188
FaeI CATG 3 cut(s) 128, 183, 271
FatI CATG 3 cut(s) 124, 179, 267
FauNDI CATATG 1 cut(s) 590
FokI GGATG 2 cut(s) 131, 551
FspBI CTAG 1 cut(s) 339
HaeIII GGCC 2 cut(s) 186, 583
HapII CCGG 2 cut(s) 23, 187
HgaI GACGC 1 cut(s) 522
Hin1I GRCGYC 1 cut(s) 514
Hin1II CATG 3 cut(s) 128, 183, 271
HincII GTYRAC 2 cut(s) 109, 352
HindII GTYRAC 2 cut(s) 109, 352
HinfI GANTC 1 cut(s) 6
HpaI GTTAAC 1 cut(s) 352
HpaII CCGG 2 cut(s) 23, 187
Hpy166II GTNNAC 2 cut(s) 109, 352
Hpy188I TCNGA 3 cut(s) 38, 102, 200
Hpy188III TCNNGA 3 cut(s) 211, 260, 536
Hpy8I GTNNAC 2 cut(s) 109, 352
Hpy99I CGWCG 1 cut(s) 516
HpyAV CCTTC 1 cut(s) 542
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 1 cut(s) 580
HpyF3I CTNAG 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 514
Hsp92II CATG 3 cut(s) 128, 183, 271
KspAI GTTAAC 1 cut(s) 352
Kzo9I GATC 5 cut(s) 97, 256, 328, 393, 448
LmnI GCTCC 1 cut(s) 189
LpnPI CCDG 8 cut(s) 36, 75, 179, 196, 200, 277, 290, 320
LweI GCATC 1 cut(s) 529
MaeI CTAG 1 cut(s) 339
MaeIII GTNAC 2 cut(s) 235, 421
MalI GATC 5 cut(s) 99, 258, 330, 395, 450
MboI GATC 5 cut(s) 97, 256, 328, 393, 448
MboII GAAGA 2 cut(s) 539, 576
MflI RGATCY 2 cut(s) 256, 393
MluCI AATT 1 cut(s) 493
MnlI CCTC 1 cut(s) 594
MseI TTAA 4 cut(s) 60, 72, 351, 386
MspCI CTTAAG 1 cut(s) 59
MspI CCGG 2 cut(s) 23, 187
MspR9I CCNGG 1 cut(s) 23
MwoI GCNNNNNNNGC 1 cut(s) 580
NciI CCSGG 1 cut(s) 23
NdeI CATATG 1 cut(s) 590
NdeII GATC 5 cut(s) 97, 256, 328, 393, 448
NlaIII CATG 3 cut(s) 128, 183, 271
PfeI GAWTC 1 cut(s) 6
PsuI RGATCY 2 cut(s) 256, 393
RsaI GTAC 1 cut(s) 290
RsaNI GTAC 1 cut(s) 289
SaqAI TTAA 4 cut(s) 60, 72, 351, 386
Sau3AI GATC 5 cut(s) 97, 256, 328, 393, 448
ScrFI CCNGG 1 cut(s) 23
SetI ASST 4 cut(s) 168, 481, 534, 576
SfaNI GCATC 1 cut(s) 529
SfcI CTRYAG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 1 cut(s) 493
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 463
SspMI CTAG 1 cut(s) 339
StyD4I CCNGG 1 cut(s) 21
TaqI TCGA 2 cut(s) 148, 261
TasI AATT 1 cut(s) 493
TatI WGTACW 1 cut(s) 288
TfiI GAWTC 1 cut(s) 6
Tru1I TTAA 4 cut(s) 60, 72, 351, 386
Tru9I TTAA 4 cut(s) 60, 72, 351, 386
TspDTI ATGAA 3 cut(s) 113, 134, 284
Vha464I CTTAAG 1 cut(s) 59
XspI CTAG 1 cut(s) 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.