Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011118.1

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

4077 .. 7640

Gene Structure 3564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011118.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

atggatgacataaacacttgtcacatttgtttcaagaggtacgacctgaatgtggaccttttggatgttcatgcagacaaaagcacatttcatcgttttgataagttcaatctgaagtacaaccactgtggtcaaagtaggctcagggagattttccttaagcaggataatcttatccaaggccgtttccttgctgagctgacaaagcaagtgttttctgatctttctgccagtaaatatcagtgtgacctgaaagttatccacaaggatgtgaaggcatcaaatgtacttgatgactactgtgaagccgttgtcggagattttgatttggcaaagcttttggatcaccaagattcacatatcaccactgcagtggttaaaaagctgcatcaggaaaagaagcttgaaatgctagtggacaaggatattaatactaactgtgatcgcattgagcttgaagaaatgattcaagttgcactcgtgtactcaataccttcctggtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

168

Amino Acids

19.57

Weight (kDa)

5.71

Isoelectric Point (pI)

31.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	41, 119, 288, 485
AfiI	CCNNNNNNNGG	2 cut(s)	52, 163
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	5 cut(s)	34, 109, 407, 458, 470
AjnI	CCWGG	1 cut(s)	497
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	5 cut(s)	199, 337, 385, 403, 454
AluI	AGCT	5 cut(s)	199, 337, 385, 403, 454
AlwI	GGATC	1 cut(s)	351
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	385
AseI	ATTAAT	1 cut(s)	429
Asp700I	GAANNNNTTC	1 cut(s)	465
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	338, 355
AvaII	GGWCC	1 cut(s)	55
BauI	CACGAG	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	372
BceAI	ACGGC	2 cut(s)	168, 293
BciT130I	CCWGG	1 cut(s)	499
BfaI	CTAG	1 cut(s)	413
BfmI	CTRYAG	1 cut(s)	369
BfrI	CTTAAG	1 cut(s)	158
BisI	GCNGC	1 cut(s)	386
BlpI	GCTNAGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	1 cut(s)	499
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmrFI	CCNGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	287, 397
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	2 cut(s)	52, 163
Bse1I	ACTGG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	499
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	3 cut(s)	10, 70, 274
BseLI	CCNNNNNNNGG	2 cut(s)	52, 163
BseMII	CTCAG	2 cut(s)	157, 186
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	372
BshFI	GGCC	1 cut(s)	183
BslI	CCNNNNNNNGG	2 cut(s)	52, 163
BsnI	GGCC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	220, 343, 442
Bsp1720I	GCTNAGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	156, 187
BspMAI	CTGCAG	1 cut(s)	373
BspPI	GGATC	1 cut(s)	351
BspTI	CTTAAG	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	220, 343, 442
BssSI	CACGAG	1 cut(s)	479
BssT1I	CCWWGG	1 cut(s)	178
Bst2BI	CACGAG	1 cut(s)	479
Bst2UI	CCWGG	1 cut(s)	499
Bst4CI	ACNGT	3 cut(s)	128, 302, 440
BstAFI	CTTAAG	1 cut(s)	158
BstDEI	CTNAG	2 cut(s)	143, 195
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	3 cut(s)	10, 70, 274
BstKTI	GATC	3 cut(s)	223, 346, 445
BstMBI	GATC	3 cut(s)	220, 343, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 409
BstNI	CCWGG	1 cut(s)	499
BstSCI	CCNGG	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	1 cut(s)	372
BstXI	CCANNNNNNTGG	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	3 cut(s)	10, 70, 274
BtsI	GCAGTG	2 cut(s)	366, 378
BtsIMutI	CAGTG	4 cut(s)	124, 248, 366, 378
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	40, 118, 287, 484
CspCI	CAANNNNNGTGG	2 cut(s)	109, 144
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	8 cut(s)	142, 183, 199, 308, 337, 385, 403, 454
CviKI_1	RGCY	8 cut(s)	142, 183, 199, 308, 337, 385, 403, 454
CviQI	GTAC	4 cut(s)	40, 118, 287, 484
DdeI	CTNAG	2 cut(s)	143, 195
DpnI	GATC	3 cut(s)	222, 345, 444
DpnII	GATC	3 cut(s)	220, 343, 442
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	134
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	497
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	74
FaiI	YATR	4 cut(s)	11, 72, 360, 505
FatI	CATG	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	3 cut(s)	17, 77, 281
Fsp4HI	GCNGC	1 cut(s)	386
FspBI	CTAG	1 cut(s)	413
GluI	GCNGC	1 cut(s)	386
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	74
HindIII	AAGCTT	2 cut(s)	335, 401
HinfI	GANTC	2 cut(s)	353, 466
HphI	GGTGA	2 cut(s)	338, 355
Hpy166II	GTNNAC	3 cut(s)	55, 418, 484
Hpy188I	TCNGA	3 cut(s)	114, 220, 317
Hpy188III	TCNNGA	2 cut(s)	34, 392
Hpy8I	GTNNAC	3 cut(s)	55, 418, 484
HpyAV	CCTTC	2 cut(s)	268, 504
HpyCH4III	ACNGT	3 cut(s)	128, 302, 440
HpyCH4V	TGCA	4 cut(s)	74, 371, 388, 476
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 409
HpyF3I	CTNAG	2 cut(s)	143, 195
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	220, 343, 442
LpnPI	CCDG	7 cut(s)	59, 130, 149, 244, 263, 377, 484
Lsp1109I	GCAGC	1 cut(s)	372
LweI	GCATC	2 cut(s)	287, 397
MaeI	CTAG	1 cut(s)	413
MaeIII	GTNAC	2 cut(s)	20, 245
MalI	GATC	3 cut(s)	222, 345, 444
MboI	GATC	3 cut(s)	220, 343, 442
MboII	GAAGA	1 cut(s)	470
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	1 cut(s)	30
MroXI	GAANNNNTTC	1 cut(s)	465
MseI	TTAA	3 cut(s)	159, 378, 429
MslI	CAYNNNNRTG	2 cut(s)	267, 371
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	499
MvaI	CCWGG	1 cut(s)	499
MwoI	GCNNNNNNNGC	2 cut(s)	205, 409
NdeII	GATC	3 cut(s)	220, 343, 442
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	2 cut(s)	20, 245
OliI	CACNNNNGTG	1 cut(s)	371
PdmI	GAANNNNTTC	1 cut(s)	465
PfeI	GAWTC	2 cut(s)	353, 466
PkrI	GCNGC	1 cut(s)	387
PshBI	ATTAAT	1 cut(s)	429
Psp6I	CCWGG	1 cut(s)	497
PspGI	CCWGG	1 cut(s)	497
PspPI	GGNCC	1 cut(s)	55
PstI	CTGCAG	1 cut(s)	373
RsaI	GTAC	4 cut(s)	41, 119, 288, 485
RsaNI	GTAC	4 cut(s)	40, 118, 287, 484
RseI	CAYNNNNRTG	2 cut(s)	267, 371
SaqAI	TTAA	3 cut(s)	159, 378, 429
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	3 cut(s)	220, 343, 442
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	287, 397
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	267, 371
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
SspMI	CTAG	1 cut(s)	413
StyD4I	CCNGG	1 cut(s)	497
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	128, 302, 440
TatI	WGTACW	3 cut(s)	117, 286, 483
TfiI	GAWTC	2 cut(s)	353, 466
Tru1I	TTAA	3 cut(s)	159, 378, 429
Tru9I	TTAA	3 cut(s)	159, 378, 429
TscAI	CASTG	4 cut(s)	131, 248, 373, 378
TseFI	GTSAC	2 cut(s)	20, 245
TseI	GCWGC	1 cut(s)	385
Tsp45I	GTSAC	2 cut(s)	20, 245
TspDTI	ATGAA	2 cut(s)	59, 80
TspRI	CASTG	4 cut(s)	131, 248, 373, 378
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	1 cut(s)	55
VspI	ATTAAT	1 cut(s)	429
XagI	CCTNNNNNAGG	1 cut(s)	161
XmnI	GAANNNNTTC	1 cut(s)	465
XspI	CTAG	1 cut(s)	413

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.