Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

27326016 .. 27326863

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0260000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTTCTCTCTATTTCAATTTGTAGATCTGAGAATGAACACGCACGAAGTGTTAAAGAGACGAGCCCATCACATGCAGTTGTAGTAGTAGTCATCGTAATCGACAGTGGTGGAGGAGTCAGAGTCATCAGGACGCAGAGCAAGGTCCAGAGGCAAAAAGCGAGGAGACCCAATTCCAGGTTTATACAGCTTTCAGGCTTAGATGGATGCTATTACGGGCGTCTCATGATCAGACAATCATGTATATGTAGTATAGATATGTTCATGATTTTCTTAAATTTGGAGCTAAATAATAAACCTTCAATGGCTTCTAACAATTCACAATACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

110

Amino Acids

12.38

Weight (kDa)

9.76

Isoelectric Point (pI)

55.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	277
AcyI	GRCGYC	1 cut(s)	220
AdeI	CACNNNGTG	1 cut(s)	50
AfiI	CCNNNNNNNGG	1 cut(s)	177
AgsI	TTSAA	2 cut(s)	18, 303
AjnI	CCWGG	1 cut(s)	176
AluBI	AGCT	2 cut(s)	190, 286
AluI	AGCT	2 cut(s)	190, 286
Alw26I	GTCTC	3 cut(s)	53, 160, 227
ApoI	RAATTY	1 cut(s)	277
AspS9I	GGNCC	1 cut(s)	145
AvaII	GGWCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	68
BccI	CCATC	2 cut(s)	76, 197
BciT130I	CCWGG	1 cut(s)	178
BclI	TGATCA	1 cut(s)	228
BcoDI	GTCTC	3 cut(s)	53, 160, 227
BglII	AGATCT	1 cut(s)	26
Bme1390I	CCNGG	1 cut(s)	178
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	178
BmsI	GCATC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	220
BsaI	GGTCTC	1 cut(s)	160
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	178
BseGI	GGATG	1 cut(s)	212
BseLI	CCNNNNNNNGG	1 cut(s)	177
BseMII	CTCAG	1 cut(s)	21
BseRI	GAGGAG	2 cut(s)	129, 178
BslI	CCNNNNNNNGG	1 cut(s)	177
BsmAI	GTCTC	3 cut(s)	53, 160, 227
BsmBI	CGTCTC	2 cut(s)	53, 227
Bso31I	GGTCTC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	68
Bsp143I	GATC	2 cut(s)	26, 228
BspCNI	CTCAG	1 cut(s)	22
BspHI	TCATGA	2 cut(s)	225, 264
BspTNI	GGTCTC	1 cut(s)	160
BssMI	GATC	2 cut(s)	26, 228
BssNI	GRCGYC	1 cut(s)	220
Bst2UI	CCWGG	1 cut(s)	178
Bst4CI	ACNGT	1 cut(s)	107
BstACI	GRCGYC	1 cut(s)	220
BstDEI	CTNAG	2 cut(s)	30, 199
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	29, 231
BstMAI	GTCTC	3 cut(s)	53, 160, 227
BstMBI	GATC	2 cut(s)	26, 228
BstNI	CCWGG	1 cut(s)	178
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	176
BstX2I	RGATCY	1 cut(s)	26
BstYI	RGATCY	1 cut(s)	26
BtsCI	GGATG	1 cut(s)	212
BtsIMutI	CAGTG	1 cut(s)	112
CciI	TCATGA	2 cut(s)	225, 264
Cfr13I	GGNCC	1 cut(s)	145
CseI	GACGC	2 cut(s)	142, 209
CviAII	CATG	4 cut(s)	74, 226, 240, 265
CviJI	RGCY	5 cut(s)	66, 190, 198, 286, 308
CviKI_1	RGCY	5 cut(s)	66, 190, 198, 286, 308
DdeI	CTNAG	2 cut(s)	30, 199
DpnI	GATC	2 cut(s)	28, 230
DpnII	GATC	2 cut(s)	26, 228
DraIII	CACNNNGTG	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	68
Eco31I	GGTCTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	145
EcoRII	CCWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	68
Esp3I	CGTCTC	2 cut(s)	53, 227
FaeI	CATG	4 cut(s)	77, 229, 243, 268
FaiI	YATR	9 cut(s)	75, 185, 227, 241, 245, 247, 254, 260, 266
FatI	CATG	4 cut(s)	73, 225, 239, 264
FbaI	TGATCA	1 cut(s)	228
FokI	GGATG	1 cut(s)	219
FriOI	GRGCYC	1 cut(s)	68
HgaI	GACGC	2 cut(s)	142, 209
Hin1I	GRCGYC	1 cut(s)	220
Hin1II	CATG	4 cut(s)	77, 229, 243, 268
HinfI	GANTC	2 cut(s)	117, 123
Hpy188I	TCNGA	3 cut(s)	31, 122, 233
Hpy188III	TCNNGA	4 cut(s)	130, 148, 226, 265
HpyAV	CCTTC	1 cut(s)	309
HpyCH4III	ACNGT	1 cut(s)	107
HpyCH4V	TGCA	1 cut(s)	77
HpyF3I	CTNAG	2 cut(s)	30, 199
Hsp92I	GRCGYC	1 cut(s)	220
Hsp92II	CATG	4 cut(s)	77, 229, 243, 268
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	26, 228
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	5 cut(s)	115, 161, 163, 180, 190
LweI	GCATC	1 cut(s)	197
MalI	GATC	2 cut(s)	28, 230
MboI	GATC	2 cut(s)	26, 228
MflI	RGATCY	1 cut(s)	26
MhlI	GDGCHC	1 cut(s)	68
MluCI	AATT	4 cut(s)	18, 172, 277, 316
MlyI	GAGTC	2 cut(s)	126, 132
MnlI	CCTC	3 cut(s)	107, 144, 156
MseI	TTAA	2 cut(s)	54, 275
MslI	CAYNNNNRTG	1 cut(s)	244
MspR9I	CCNGG	1 cut(s)	178
MvaI	CCWGG	1 cut(s)	178
NdeII	GATC	2 cut(s)	26, 228
NlaIII	CATG	4 cut(s)	77, 229, 243, 268
NspI	RCATGY	1 cut(s)	77
PagI	TCATGA	2 cut(s)	225, 264
PleI	GAGTC	2 cut(s)	125, 131
PpsI	GAGTC	2 cut(s)	125, 131
Psp6I	CCWGG	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	176
PspPI	GGNCC	1 cut(s)	145
PsuI	RGATCY	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	244
SaqAI	TTAA	2 cut(s)	54, 275
Sau3AI	GATC	2 cut(s)	26, 228
Sau96I	GGNCC	1 cut(s)	145
SchI	GAGTC	2 cut(s)	126, 132
ScrFI	CCNGG	1 cut(s)	178
SduI	GDGCHC	1 cut(s)	68
SetI	ASST	5 cut(s)	147, 182, 192, 288, 301
SfaNI	GCATC	1 cut(s)	197
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	1 cut(s)	244
Sse9I	AATT	4 cut(s)	18, 172, 277, 316
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	107
TaqI	TCGA	1 cut(s)	102
TasI	AATT	4 cut(s)	18, 172, 277, 316
Tru1I	TTAA	2 cut(s)	54, 275
Tru9I	TTAA	2 cut(s)	54, 275
TscAI	CASTG	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	51, 253
TspRI	CASTG	1 cut(s)	112
VpaK11BI	GGWCC	1 cut(s)	145
XapI	RAATTY	1 cut(s)	277
XceI	RCATGY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.