Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

22357469 .. 22359319

Gene Structure 1851 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTTTGACTATCATCGGCAACATGGGATAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAGATGGCTGAGCACAGAATATCAAAATATGGCAAGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTGTACAGTGAGAATGTTGTATGGTTGATACAGGTTCTTTGCATTATAATCTCTGTGTTCGATCTGTGGCATTTGTCTTCCTCTTACCATAAGCTCTATCTACTGTGTTTTGATTCCAGGTTCAAGATGCATCCAGTGGCCATGAAATTAGAAGGGAGTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

112

Amino Acids

13.28

Weight (kDa)

7.82

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 90	1.3e-26	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	312
AfaI	GTAC	1 cut(s)	179
AgsI	TTSAA	1 cut(s)	298
AjnI	CCWGG	1 cut(s)	290
AluBI	AGCT	2 cut(s)	49, 268
AluI	AGCT	2 cut(s)	49, 268
Alw21I	GWGCWC	1 cut(s)	105
AoxI	GGCC	2 cut(s)	31, 312
AspS9I	GGNCC	1 cut(s)	142
AvaII	GGWCC	1 cut(s)	142
BalI	TGGCCA	1 cut(s)	314
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	105
BccI	CCATC	1 cut(s)	88
BceAI	ACGGC	1 cut(s)	18
BciT130I	CCWGG	1 cut(s)	292
BfaI	CTAG	1 cut(s)	153
BlpI	GCTNAGC	2 cut(s)	45, 99
Bme1390I	CCNGG	1 cut(s)	292
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	1 cut(s)	142
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	291, 313
BpiI	GAAGAC	1 cut(s)	243
Bpu1102I	GCTNAGC	2 cut(s)	45, 99
Bse1I	ACTGG	2 cut(s)	81, 308
BseBI	CCWGG	1 cut(s)	292
BseGI	GGATG	1 cut(s)	304
BseMII	CTCAG	2 cut(s)	36, 90
BseNI	ACTGG	2 cut(s)	81, 308
BshFI	GGCC	2 cut(s)	33, 314
BsiHKAI	GWGCWC	1 cut(s)	105
BslFI	GGGAC	1 cut(s)	155
BsmFI	GGGAC	1 cut(s)	155
BsnI	GGCC	2 cut(s)	33, 314
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp1407I	TGTACA	1 cut(s)	177
Bsp143I	GATC	2 cut(s)	70, 235
Bsp1720I	GCTNAGC	2 cut(s)	45, 99
BspANI	GGCC	2 cut(s)	33, 314
BspCNI	CTCAG	2 cut(s)	37, 91
BspLI	GGNNCC	1 cut(s)	143
BsrGI	TGTACA	1 cut(s)	177
BsrI	ACTGG	2 cut(s)	81, 308
BssMI	GATC	2 cut(s)	70, 235
Bst2UI	CCWGG	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	182, 279
BstAUI	TGTACA	1 cut(s)	177
BstDEI	CTNAG	2 cut(s)	45, 99
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	2 cut(s)	73, 238
BstMBI	GATC	2 cut(s)	70, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	290
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	33, 314
BtsCI	GGATG	1 cut(s)	304
BtsIMutI	CAGTG	2 cut(s)	187, 315
Cfr13I	GGNCC	1 cut(s)	142
Csp6I	GTAC	1 cut(s)	178
CspCI	CAANNNNNGTGG	2 cut(s)	119, 154
CviAII	CATG	2 cut(s)	23, 316
CviJI	RGCY	6 cut(s)	33, 49, 98, 152, 268, 314
CviKI_1	RGCY	6 cut(s)	33, 49, 98, 152, 268, 314
CviQI	GTAC	1 cut(s)	178
DdeI	CTNAG	2 cut(s)	45, 99
DpnI	GATC	2 cut(s)	72, 237
DpnII	GATC	2 cut(s)	70, 235
EaeI	YGGCCR	1 cut(s)	312
Eco47I	GGWCC	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	290
EcoT22I	ATGCAT	1 cut(s)	306
FaeI	CATG	2 cut(s)	26, 319
FaiI	YATR	7 cut(s)	24, 120, 196, 221, 264, 317, 337
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	22, 315
FokI	GGATG	1 cut(s)	291
FspBI	CTAG	1 cut(s)	153
HaeIII	GGCC	2 cut(s)	33, 314
Hin1II	CATG	2 cut(s)	26, 319
HinfI	GANTC	2 cut(s)	287, 331
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	70, 93
Hpy188III	TCNNGA	1 cut(s)	298
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	182, 279
HpyCH4V	TGCA	2 cut(s)	216, 304
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
HpyF3I	CTNAG	2 cut(s)	45, 99
Hsp92II	CATG	2 cut(s)	26, 319
Kzo9I	GATC	2 cut(s)	70, 235
LpnPI	CCDG	5 cut(s)	94, 191, 277, 304, 321
LweI	GCATC	2 cut(s)	291, 313
MaeI	CTAG	1 cut(s)	153
MalI	GATC	2 cut(s)	72, 237
MboI	GATC	2 cut(s)	70, 235
MboII	GAAGA	1 cut(s)	243
MhlI	GDGCHC	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	2 cut(s)	173, 320
MluNI	TGGCCA	1 cut(s)	314
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	1 cut(s)	265
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	306
MscI	TGGCCA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	292
MvaI	CCWGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	55
NdeII	GATC	2 cut(s)	70, 235
NlaIII	CATG	2 cut(s)	26, 319
NlaIV	GGNNCC	1 cut(s)	143
NsiI	ATGCAT	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	287
PsiI	TTATAA	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	290
PspGI	CCWGG	1 cut(s)	290
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	142
RsaI	GTAC	1 cut(s)	179
RsaNI	GTAC	1 cut(s)	178
Sau3AI	GATC	2 cut(s)	70, 235
Sau96I	GGNCC	1 cut(s)	142
ScrFI	CCNGG	1 cut(s)	292
SduI	GDGCHC	1 cut(s)	105
SetI	ASST	4 cut(s)	51, 210, 270, 296
SfaNI	GCATC	2 cut(s)	291, 313
SinI	GGWCC	1 cut(s)	142
Sse9I	AATT	2 cut(s)	173, 320
SspMI	CTAG	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	290
TaaI	ACNGT	2 cut(s)	182, 279
TaqI	TCGA	1 cut(s)	234
TasI	AATT	2 cut(s)	173, 320
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	287
TscAI	CASTG	2 cut(s)	187, 315
TspDTI	ATGAA	2 cut(s)	186, 332
TspRI	CASTG	2 cut(s)	187, 315
VpaK11BI	GGWCC	1 cut(s)	142
XspI	CTAG	1 cut(s)	153
Zsp2I	ATGCAT	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.