Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

42990713 .. 42993576

Gene Structure 2864 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013851

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATGACATAAACACTTGTCACATTTGTTTCAAGAGGTACGACCTGAATGTGGACCTTTTGGATGTTCATGCAGACAAAAGCACATTTCATCATTATGATAAGTTCAATCTGAAGTACAACCACTGTGGTCAAAGTAGGCTCAGGGAGATTTTCCTTAAGCAGGATAATCTTATCCAAGGCCGTTTCCTTGCTGAGCTGACAAAGCAAGTGTTTTCTGATCTTTCTGCCAGTAAATATCAAATGGCTGAGCACAGAATATCAAAATATGGCAGGAAGCAAAGTGAGTGGGACCAAATGGCTAGTTGGATAGTGAACAATGAATTATACAATGAGAATGTTCTGCCACGACTGTACAATATATACCAGGAAATGGGGATAGTCACATCATTTCAGAACATTCTTGACAATATCTTTATACCGCTGTTTGAGGTTACCATAAATCCAGATTCCCACCCGCAGTTGCAGGTTTTTCTAAAACAGATGATGAAGATGGAGGTCGACTACAAAGTGGTATTAATCGGATTTTCTGCAGACATTGGATACTTATTAGGAGATCCACACGAGCATTGCAGGTCTGTCGAACAAGGAAATGCAGAACCTTCAAAGGTTAAAAAGCTGCATCAGGAAAAGAAGCTTGAAATGCTAGTGGACAAGGATATTAATACTAACTGTGATCGCATTGAGCTTGAAGAAATGATTCAAGTTGCACTCGTGTACTCAATACCTTCCTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001101 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0010033 GO:0010154 GO:0016020 GO:0016021 GO:0019867 GO:0019899 GO:0019900 GO:0019901 GO:0022414 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043424 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050896 GO:0061458 GO:0097305 GO:0098573 GO:0098588 GO:0098805 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00230 ko01100 ko01110 ko01130 map00230 map01100 map01110 map01130

Pfam Domains

Protein Families

A_deaminase

Protein Analysis

247

Amino Acids

28.94

Weight (kDa)

5.68

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP_deaminase	PF19326	11 - 164	6.3e-74	AMP deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	457, 564
AccB7I	CCANNNNNTGG	1 cut(s)	373
AccI	GTMKAC	1 cut(s)	501
AciI	CCGC	2 cut(s)	422, 458
AclWI	GGATC	1 cut(s)	551
AcuI	CTGAAG	1 cut(s)	134
AfaI	GTAC	4 cut(s)	41, 119, 356, 719
AfiI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
AflII	CTTAAG	1 cut(s)	158
AgsI	TTSAA	6 cut(s)	34, 109, 606, 641, 692, 704
AjnI	CCWGG	2 cut(s)	366, 731
AluBI	AGCT	4 cut(s)	199, 619, 637, 688
AluI	AGCT	4 cut(s)	199, 619, 637, 688
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	551
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	619
AseI	ATTAAT	2 cut(s)	518, 663
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	2 cut(s)	55, 292
AvaII	GGWCC	2 cut(s)	55, 292
BauI	CACGAG	2 cut(s)	563, 713
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	1 cut(s)	606
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	168
BcgI	CGANNNNNNTGC	2 cut(s)	562, 596
BciT130I	CCWGG	2 cut(s)	368, 733
BciVI	GTATCC	1 cut(s)	536
BfaI	CTAG	2 cut(s)	303, 647
BfmI	CTRYAG	1 cut(s)	531
BfrI	CTTAAG	1 cut(s)	158
BfuAI	ACCTGC	2 cut(s)	457, 564
BfuI	GTATCC	1 cut(s)	536
BisI	GCNGC	1 cut(s)	620
BlpI	GCTNAGC	2 cut(s)	195, 249
BlsI	GCNGC	1 cut(s)	621
Bme1390I	CCNGG	2 cut(s)	368, 733
Bme18I	GGWCC	2 cut(s)	55, 292
BmgT120I	GGNCC	2 cut(s)	55, 292
BmiI	GGNNCC	1 cut(s)	293
BmrFI	CCNGG	2 cut(s)	368, 733
BmsI	GCATC	1 cut(s)	631
Bpu10I	CCTNAGC	1 cut(s)	143
Bpu1102I	GCTNAGC	2 cut(s)	195, 249
BsaJI	CCNNGG	1 cut(s)	178
Bsc4I	CCNNNNNNNGG	3 cut(s)	52, 163, 373
Bse1I	ACTGG	1 cut(s)	231
Bse3DI	GCAATG	1 cut(s)	568
BseBI	CCWGG	2 cut(s)	368, 733
BseDI	CCNNGG	1 cut(s)	178
BseGI	GGATG	2 cut(s)	10, 70
BseLI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BseMI	GCAATG	1 cut(s)	568
BseMII	CTCAG	3 cut(s)	157, 186, 240
BseNI	ACTGG	1 cut(s)	231
BseXI	GCAGC	1 cut(s)	606
BshFI	GGCC	1 cut(s)	183
BsiHKAI	GWGCWC	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	52, 163, 373
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	3 cut(s)	220, 556, 676
Bsp1720I	GCTNAGC	2 cut(s)	195, 249
BspACI	CCGC	2 cut(s)	422, 458
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	3 cut(s)	156, 187, 241
BspLI	GGNNCC	1 cut(s)	293
BspMAI	CTGCAG	1 cut(s)	535
BspMI	ACCTGC	2 cut(s)	457, 564
BspPI	GGATC	1 cut(s)	551
BspTI	CTTAAG	1 cut(s)	158
BsrDI	GCAATG	1 cut(s)	568
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	178
BssMI	GATC	3 cut(s)	220, 556, 676
BssSI	CACGAG	2 cut(s)	563, 713
BssT1I	CCWWGG	1 cut(s)	178
Bst2BI	CACGAG	2 cut(s)	563, 713
Bst2UI	CCWGG	2 cut(s)	368, 733
Bst4CI	ACNGT	3 cut(s)	128, 354, 674
BstAFI	CTTAAG	1 cut(s)	158
BstAUI	TGTACA	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	143, 195, 249
BstEII	GGTNACC	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	161
BstF5I	GGATG	2 cut(s)	10, 70
BstKTI	GATC	3 cut(s)	223, 559, 679
BstMBI	GATC	3 cut(s)	220, 556, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	205, 643
BstNI	CCWGG	2 cut(s)	368, 733
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	2 cut(s)	366, 731
BstSFI	CTRYAG	1 cut(s)	531
BstV1I	GCAGC	1 cut(s)	606
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BsuI	GTATCC	1 cut(s)	536
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	2 cut(s)	10, 70
BtsIMutI	CAGTG	1 cut(s)	124
BveI	ACCTGC	2 cut(s)	457, 564
Cfr13I	GGNCC	2 cut(s)	55, 292
Csp6I	GTAC	4 cut(s)	40, 118, 355, 718
CspCI	CAANNNNNGTGG	4 cut(s)	109, 144, 269, 304
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	8 cut(s)	142, 183, 199, 248, 302, 619, 637, 688
CviKI_1	RGCY	8 cut(s)	142, 183, 199, 248, 302, 619, 637, 688
CviQI	GTAC	4 cut(s)	40, 118, 355, 718
DdeI	CTNAG	3 cut(s)	143, 195, 249
DpnI	GATC	3 cut(s)	222, 558, 678
DpnII	GATC	3 cut(s)	220, 556, 676
Eco130I	CCWWGG	1 cut(s)	178
Eco47I	GGWCC	2 cut(s)	55, 292
Eco57I	CTGAAG	1 cut(s)	134
Eco91I	GGTNACC	1 cut(s)	433
EcoNI	CCTNNNNNAGG	1 cut(s)	161
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	366, 731
EcoT14I	CCWWGG	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	178
FaeI	CATG	1 cut(s)	74
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	1 cut(s)	70
FauI	CCCGC	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	501
Fnu4HI	GCNGC	1 cut(s)	620
FokI	GGATG	2 cut(s)	17, 77
Fsp4HI	GCNGC	1 cut(s)	620
FspBI	CTAG	2 cut(s)	303, 647
GluI	GCNGC	1 cut(s)	620
HaeIII	GGCC	1 cut(s)	183
Hin1II	CATG	1 cut(s)	74
HincII	GTYRAC	1 cut(s)	502
HindII	GTYRAC	1 cut(s)	502
HindIII	AAGCTT	1 cut(s)	635
HinfI	GANTC	2 cut(s)	449, 700
Hpy166II	GTNNAC	5 cut(s)	55, 316, 502, 652, 718
Hpy188I	TCNGA	4 cut(s)	114, 220, 396, 524
Hpy188III	TCNNGA	4 cut(s)	34, 404, 446, 626
Hpy8I	GTNNAC	5 cut(s)	55, 316, 502, 652, 718
HpyAV	CCTTC	2 cut(s)	612, 738
HpyCH4III	ACNGT	3 cut(s)	128, 354, 674
HpyCH4V	TGCA	7 cut(s)	74, 466, 533, 573, 596, 622, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	205, 643
HpyF3I	CTNAG	3 cut(s)	143, 195, 249
Hsp92II	CATG	1 cut(s)	74
Kzo9I	GATC	3 cut(s)	220, 556, 676
Lsp1109I	GCAGC	1 cut(s)	606
LweI	GCATC	1 cut(s)	631
MaeI	CTAG	2 cut(s)	303, 647
MaeIII	GTNAC	3 cut(s)	20, 382, 433
MalI	GATC	3 cut(s)	222, 558, 678
MboI	GATC	3 cut(s)	220, 556, 676
MboII	GAAGA	2 cut(s)	502, 704
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	287
MnlI	CCTC	3 cut(s)	30, 424, 490
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	4 cut(s)	159, 518, 612, 663
MslI	CAYNNNNRTG	1 cut(s)	96
MspA1I	CMGCKG	1 cut(s)	424
MspCI	CTTAAG	1 cut(s)	158
MspR9I	CCNGG	2 cut(s)	368, 733
MvaI	CCWGG	2 cut(s)	368, 733
MwoI	GCNNNNNNNGC	2 cut(s)	205, 643
NdeII	GATC	3 cut(s)	220, 556, 676
NlaIII	CATG	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	293
NmuCI	GTSAC	2 cut(s)	20, 382
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	2 cut(s)	449, 700
PflMI	CCANNNNNTGG	1 cut(s)	373
PkrI	GCNGC	1 cut(s)	621
PshBI	ATTAAT	2 cut(s)	518, 663
Psp6I	CCWGG	2 cut(s)	366, 731
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	366, 731
PspN4I	GGNNCC	1 cut(s)	293
PspPI	GGNCC	2 cut(s)	55, 292
PstI	CTGCAG	1 cut(s)	535
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	4 cut(s)	41, 119, 356, 719
RsaNI	GTAC	4 cut(s)	40, 118, 355, 718
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	500
SaqAI	TTAA	4 cut(s)	159, 518, 612, 663
SatI	GCNGC	1 cut(s)	620
Sau3AI	GATC	3 cut(s)	220, 556, 676
Sau96I	GGNCC	2 cut(s)	55, 292
ScrFI	CCNGG	2 cut(s)	368, 733
SduI	GDGCHC	1 cut(s)	255
SfaNI	GCATC	1 cut(s)	631
SfcI	CTRYAG	1 cut(s)	531
SinI	GGWCC	2 cut(s)	55, 292
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	158
SmoI	CTYRAG	1 cut(s)	158
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	2 cut(s)	422, 458
SspMI	CTAG	2 cut(s)	303, 647
StyD4I	CCNGG	2 cut(s)	366, 731
StyI	CCWWGG	1 cut(s)	178
TaaI	ACNGT	3 cut(s)	128, 354, 674
TaqI	TCGA	2 cut(s)	501, 582
TasI	AATT	1 cut(s)	323
TatI	WGTACW	3 cut(s)	117, 354, 717
TfiI	GAWTC	2 cut(s)	449, 700
Tru1I	TTAA	4 cut(s)	159, 518, 612, 663
Tru9I	TTAA	4 cut(s)	159, 518, 612, 663
TscAI	CASTG	1 cut(s)	131
TseFI	GTSAC	2 cut(s)	20, 382
TseI	GCWGC	1 cut(s)	619
Tsp45I	GTSAC	2 cut(s)	20, 382
TspDTI	ATGAA	4 cut(s)	59, 80, 336, 503
TspRI	CASTG	1 cut(s)	131
Van91I	CCANNNNNTGG	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	158
VpaK11BI	GGWCC	2 cut(s)	55, 292
VspI	ATTAAT	2 cut(s)	518, 663
XagI	CCTNNNNNAGG	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	501
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	303, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.