Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0007505

Physical Location & Seq

Genomic Coordinates Forward (+)

24097956 .. 24100028

Gene Structure 2073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG233700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGCTGATGAGGGATCATGACCTAAATGATTCCAACAAAAACAATGTGAATCCCTCTGATGATGAAACATTGTTATCATTAATGAACAGGGATGTGAGGGCATCAAATGTACTTGATGACTACTGTGAAGCCGTAGTCGGAGATTTTGATTTGGCAAAGCTTTTGGATCAGCAAGATTCACATGTCACCACTGCAGTGAGGGCCATACTTGATTGGGTTAAAAAGCTGCATCAGGAAAAGAAGCTTGAAATGCTAGTGGACAAGGATATTAATACTAATTGTGATCGCATTGAGCTCGAAGAAATGATTCAAGTTGCACTCGTGTACTCAATACCTTCCTGGTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002252 GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008104 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009615 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031974 GO:0031981 GO:0033036 GO:0033365 GO:0034504 GO:0034613 GO:0036211 GO:0038023 GO:0040008 GO:0040014 GO:0040015 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045926 GO:0046777 GO:0048519 GO:0048638 GO:0048640 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051607 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0070727 GO:0071704 GO:0071944 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

115

Amino Acids

13.23

Weight (kDa)

4.46

Isoelectric Point (pI)

21.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007505)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g35700
rosa_chinensis	RchiOBHm_Chr1g0355991 RchiOBHm_Chr3g0484201 RchiOBHm_Chr4g0386571 RchiOBHm_Chr5g0062611 RchiOBHm_Chr5g0078661
rosa_laevigata	RLG00000012406 RLG00000013851 RLG00000029253 RLG00000036777
rosa_multiflora	Rmu_sc0002320.1_g000011 Rmu_sc0011118.1_g000001
rosa_roxburghii	Rroxscaffold_1G00018160
rosa_rugosa	Rorug01G0411000 Rorug02G0260000 Rorug02G0422300 Rorug05G0349200 Rorug07G0311000
rosa_samantha	Rh3AG181800 Rh3AG233700 Rh4AG009000 Rh5AG132200 Rh5AG411000 Rh7CG017900
rosa_wichuraiana	Rw0G000820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	21, 174
AfaI	GTAC	2 cut(s)	111, 326
AflIII	ACRYGT	1 cut(s)	181
AgsI	TTSAA	2 cut(s)	248, 311
AjnI	CCWGG	1 cut(s)	338
AleI	CACNNNNGTG	1 cut(s)	194
AluBI	AGCT	4 cut(s)	160, 226, 244, 295
AluI	AGCT	4 cut(s)	160, 226, 244, 295
Alw21I	GWGCWC	1 cut(s)	297
AlwI	GGATC	2 cut(s)	21, 174
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	226
AseI	ATTAAT	2 cut(s)	80, 270
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	1 cut(s)	178
BanII	GRGCYC	1 cut(s)	297
BauI	CACGAG	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	116
BcgI	CGANNNNNNTGC	2 cut(s)	277, 311
BciT130I	CCWGG	1 cut(s)	340
BfaI	CTAG	1 cut(s)	254
BfmI	CTRYAG	1 cut(s)	192
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme1390I	CCNGG	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	340
BmsI	GCATC	2 cut(s)	110, 238
BseBI	CCWGG	1 cut(s)	340
BseGI	GGATG	1 cut(s)	97
BseXI	GCAGC	1 cut(s)	213
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	297
Bsp143I	GATC	3 cut(s)	13, 166, 283
BspANI	GGCC	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	16
BspMAI	CTGCAG	1 cut(s)	196
BspPI	GGATC	2 cut(s)	21, 174
BssMI	GATC	3 cut(s)	13, 166, 283
BssSI	CACGAG	1 cut(s)	320
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	97
BstKTI	GATC	3 cut(s)	16, 169, 286
BstMBI	GATC	3 cut(s)	13, 166, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 250
BstNI	CCWGG	1 cut(s)	340
BstNSI	RCATGY	1 cut(s)	185
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	1 cut(s)	192
BstV1I	GCAGC	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	97
BtsI	GCAGTG	2 cut(s)	189, 201
BtsIMutI	CAGTG	2 cut(s)	189, 201
CciI	TCATGA	1 cut(s)	16
Cfr13I	GGNCC	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	110, 325
CviAII	CATG	2 cut(s)	17, 182
CviJI	RGCY	6 cut(s)	131, 160, 203, 226, 244, 295
CviKI_1	RGCY	6 cut(s)	131, 160, 203, 226, 244, 295
CviQI	GTAC	2 cut(s)	110, 325
DpnI	GATC	3 cut(s)	15, 168, 285
DpnII	GATC	3 cut(s)	13, 166, 283
Ecl136II	GAGCTC	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	297
Eco53kI	GAGCTC	1 cut(s)	295
EcoICRI	GAGCTC	1 cut(s)	295
EcoRII	CCWGG	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	297
FaeI	CATG	2 cut(s)	20, 185
FaiI	YATR	4 cut(s)	18, 183, 206, 346
FatI	CATG	2 cut(s)	16, 181
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	297
Fsp4HI	GCNGC	1 cut(s)	227
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	1 cut(s)	227
HaeIII	GGCC	1 cut(s)	203
Hin1II	CATG	2 cut(s)	20, 185
HindIII	AAGCTT	2 cut(s)	158, 242
HinfI	GANTC	4 cut(s)	29, 49, 176, 307
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	2 cut(s)	259, 325
Hpy188I	TCNGA	2 cut(s)	58, 140
Hpy188III	TCNNGA	2 cut(s)	17, 233
Hpy8I	GTNNAC	2 cut(s)	259, 325
HpyAV	CCTTC	1 cut(s)	345
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	194, 229, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 250
Hsp92II	CATG	2 cut(s)	20, 185
Kzo9I	GATC	3 cut(s)	13, 166, 283
LpnPI	CCDG	3 cut(s)	73, 218, 325
Lsp1109I	GCAGC	1 cut(s)	213
LweI	GCATC	2 cut(s)	110, 238
MaeI	CTAG	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	184
MalI	GATC	3 cut(s)	15, 168, 285
MboI	GATC	3 cut(s)	13, 166, 283
MboII	GAAGA	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	297
MluCI	AATT	1 cut(s)	277
MmeI	TCCRAC	2 cut(s)	57, 118
MnlI	CCTC	4 cut(s)	3, 64, 90, 192
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	3 cut(s)	80, 219, 270
MslI	CAYNNNNRTG	1 cut(s)	194
MspR9I	CCNGG	1 cut(s)	340
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	2 cut(s)	200, 250
NdeII	GATC	3 cut(s)	13, 166, 283
NlaIII	CATG	2 cut(s)	20, 185
NmuCI	GTSAC	1 cut(s)	184
NspI	RCATGY	1 cut(s)	185
OliI	CACNNNNGTG	1 cut(s)	194
PagI	TCATGA	1 cut(s)	16
PciI	ACATGT	1 cut(s)	181
PdmI	GAANNNNTTC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	29, 49, 176, 307
PkrI	GCNGC	1 cut(s)	228
PscI	ACATGT	1 cut(s)	181
PshBI	ATTAAT	2 cut(s)	80, 270
Psp124BI	GAGCTC	1 cut(s)	297
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspPI	GGNCC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	196
RsaI	GTAC	2 cut(s)	111, 326
RsaNI	GTAC	2 cut(s)	110, 325
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	80, 219, 270
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	13, 166, 283
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	1 cut(s)	340
SduI	GDGCHC	1 cut(s)	297
SetI	ASST	6 cut(s)	24, 162, 228, 246, 297, 337
SfaNI	GCATC	2 cut(s)	110, 238
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	277
SspMI	CTAG	1 cut(s)	254
SstI	GAGCTC	1 cut(s)	297
StyD4I	CCNGG	1 cut(s)	338
TaaI	ACNGT	1 cut(s)	125
TaqI	TCGA	1 cut(s)	297
TasI	AATT	1 cut(s)	277
TatI	WGTACW	2 cut(s)	109, 324
TfiI	GAWTC	4 cut(s)	29, 49, 176, 307
Tru1I	TTAA	3 cut(s)	80, 219, 270
Tru9I	TTAA	3 cut(s)	80, 219, 270
TscAI	CASTG	2 cut(s)	196, 201
TseFI	GTSAC	1 cut(s)	184
TseI	GCWGC	1 cut(s)	226
Tsp45I	GTSAC	1 cut(s)	184
TspDTI	ATGAA	2 cut(s)	78, 98
TspRI	CASTG	2 cut(s)	196, 201
VspI	ATTAAT	2 cut(s)	80, 270
XceI	RCATGY	1 cut(s)	185
XmnI	GAANNNNTTC	1 cut(s)	306
XspI	CTAG	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.