Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0020613

Physical Location & Seq

Genomic Coordinates Reverse (-)

82476237 .. 82476836

Gene Structure 600 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036609

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCGTCGGAAGAGCAGTGCTCCCAGAACCCCAAGTGCTGGTGGTGCTACGGCAAGTCCCTGGACGACATGTGCTTCCCCAATATGCATTGTTGTTTGTTCATTGAGGAGGGAAATGAGGAGGAGGAGCTGAATCTGGGGCTGTCTTTGGGAGGAAGATTCGGAGTGGACAAGAGCGAGAAAAGTAAGCTAGTCCGATCTTCCTCGATTACGTTGACTATGCCGTTTTGTAGGGAAGAGAACGACGACTCGGCGGCTTCGGCGGTGGAGAAGGCGGCGTCATACTCAGGGCTGATGAGGGCGTCCTCGCTTCTGACAGAGACGGAGGAGGAGTGGAGGAAGAGGAAGGAGTTGCAGAAGCTGCAGCGGTTGGCGAAGAAGCAGAGGAGGTCGGAGAAGCAGAGGAACAGCAACAGCACCAAGGAGGAAGAGCTGGCATTAACTAGTTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

152

Amino Acids

17.21

Weight (kDa)

5.42

Isoelectric Point (pI)

81.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EAR	PF07897	38 - 70	2.8e-13	Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP	PF16136	98 - 134	2.3e-14	Putative nuclear localisation signal in Ninja/AFP proteins

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020613)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003618 RLG00000019629 RLG00000036609
rosa_multiflora	Rmu_sc0002677.1_g000021
rosa_rugosa	Rorug05G0349200 Rorug06G0268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	39
AciI	CCGC	4 cut(s)	254, 263, 275, 367
AcyI	GRCGYC	2 cut(s)	278, 302
AfiI	CCNNNNNNNGG	1 cut(s)	39
AflIII	ACRYGT	1 cut(s)	69
AhlI	ACTAGT	1 cut(s)	443
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	130, 190, 361, 433
AluI	AGCT	4 cut(s)	130, 190, 361, 433
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	314
AlwNI	CAGNNNCTG	1 cut(s)	361
ApeKI	GCWGC	2 cut(s)	361, 364
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	348, 376
BceAI	ACGGC	2 cut(s)	67, 208
BciT130I	CCWGG	1 cut(s)	62
BcoDI	GTCTC	1 cut(s)	314
BcuI	ACTAGT	1 cut(s)	443
BfaI	CTAG	2 cut(s)	191, 444
BfmI	CTRYAG	1 cut(s)	362
BisI	GCNGC	4 cut(s)	255, 276, 362, 365
BlsI	GCNGC	4 cut(s)	256, 277, 363, 366
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BplI	GAGNNNNNCTC	1 cut(s)	37
BsaHI	GRCGYC	2 cut(s)	278, 302
BsaJI	CCNNGG	2 cut(s)	60, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	317, 347
Bsc4I	CCNNNNNNNGG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	2 cut(s)	60, 420
BseLI	CCNNNNNNNGG	1 cut(s)	39
BseMII	CTCAG	1 cut(s)	300
BseRI	GAGGAG	7 cut(s)	122, 134, 137, 140, 341, 344, 400
BseXI	GCAGC	2 cut(s)	348, 376
BsiHKAI	GWGCWC	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	1 cut(s)	39
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	4 cut(s)	254, 263, 275, 367
BspCNI	CTCAG	1 cut(s)	299
BspHI	TCATGA	1 cut(s)	452
BspMAI	CTGCAG	1 cut(s)	366
BspQI	GCTCTTC	2 cut(s)	6, 423
BssECI	CCNNGG	2 cut(s)	60, 420
BssMI	GATC	1 cut(s)	197
BssNI	GRCGYC	2 cut(s)	278, 302
BssT1I	CCWWGG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	4 cut(s)	6, 231, 335, 423
BstACI	GRCGYC	2 cut(s)	278, 302
BstAPI	GCANNNNNTGC	1 cut(s)	361
BstC8I	GCNNGC	1 cut(s)	435
BstDEI	CTNAG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 260, 361
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	60
BstSFI	CTRYAG	1 cut(s)	362
BstV1I	GCAGC	2 cut(s)	348, 376
BtsI	GCAGTG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	1 cut(s)	435
CaiI	CAGNNNCTG	1 cut(s)	361
CciI	TCATGA	1 cut(s)	452
CseI	GACGC	2 cut(s)	267, 291
CviAII	CATG	2 cut(s)	70, 453
CviJI	RGCY	7 cut(s)	130, 142, 190, 257, 292, 361, 433
CviKI_1	RGCY	7 cut(s)	130, 142, 190, 257, 292, 361, 433
DdeI	CTNAG	1 cut(s)	286
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
Eam1104I	CTCTTC	4 cut(s)	6, 231, 335, 423
EarI	CTCTTC	4 cut(s)	6, 231, 335, 423
Eco130I	CCWWGG	1 cut(s)	420
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	420
EcoT22I	ATGCAT	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	420
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	2 cut(s)	73, 456
FaiI	YATR	5 cut(s)	71, 86, 221, 283, 454
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	2 cut(s)	69, 452
Fnu4HI	GCNGC	4 cut(s)	255, 276, 362, 365
Fsp4HI	GCNGC	4 cut(s)	255, 276, 362, 365
FspBI	CTAG	2 cut(s)	191, 444
GluI	GCNGC	4 cut(s)	255, 276, 362, 365
HgaI	GACGC	2 cut(s)	267, 291
Hin1I	GRCGYC	2 cut(s)	278, 302
Hin1II	CATG	2 cut(s)	73, 456
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HinfI	GANTC	3 cut(s)	133, 159, 248
Hpy166II	GTNNAC	2 cut(s)	169, 216
Hpy188I	TCNGA	5 cut(s)	10, 164, 197, 315, 394
Hpy188III	TCNNGA	1 cut(s)	453
Hpy8I	GTNNAC	2 cut(s)	169, 216
Hpy99I	CGWCG	2 cut(s)	10, 248
HpyAV	CCTTC	2 cut(s)	265, 340
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	3 cut(s)	88, 355, 364
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 260, 361
HpyF3I	CTNAG	1 cut(s)	286
HpySE526I	ACGT	1 cut(s)	212
Hsp92I	GRCGYC	2 cut(s)	278, 302
Hsp92II	CATG	2 cut(s)	73, 456
Kzo9I	GATC	1 cut(s)	197
LguI	GCTCTTC	2 cut(s)	6, 423
LmnI	GCTCC	2 cut(s)	26, 127
LpnPI	CCDG	7 cut(s)	25, 38, 47, 74, 122, 273, 419
Lsp1109I	GCAGC	2 cut(s)	348, 376
MaeI	CTAG	2 cut(s)	191, 444
MaeII	ACGT	1 cut(s)	212
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	8 cut(s)	23, 168, 192, 248, 352, 388, 440, 441
MhlI	GDGCHC	1 cut(s)	23
MlyI	GAGTC	1 cut(s)	242
MmeI	TCCRAC	1 cut(s)	372
Mph1103I	ATGCAT	1 cut(s)	90
MseI	TTAA	1 cut(s)	440
MspA1I	CMGCKG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	3 cut(s)	45, 260, 361
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	2 cut(s)	73, 456
NmeAIII	GCCGAG	1 cut(s)	230
NsiI	ATGCAT	1 cut(s)	90
NspI	RCATGY	1 cut(s)	73
PagI	TCATGA	1 cut(s)	452
PciI	ACATGT	1 cut(s)	69
PciSI	GCTCTTC	2 cut(s)	6, 423
PfeI	GAWTC	2 cut(s)	133, 159
PflMI	CCANNNNNTGG	1 cut(s)	39
PkrI	GCNGC	4 cut(s)	256, 277, 363, 366
PleI	GAGTC	1 cut(s)	242
PpsI	GAGTC	1 cut(s)	242
PscI	ACATGT	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PstI	CTGCAG	1 cut(s)	366
PstNI	CAGNNNCTG	1 cut(s)	361
SapI	GCTCTTC	2 cut(s)	6, 423
SaqAI	TTAA	1 cut(s)	440
SatI	GCNGC	4 cut(s)	255, 276, 362, 365
Sau3AI	GATC	1 cut(s)	197
SchI	GAGTC	1 cut(s)	242
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	1 cut(s)	23
SetI	ASST	6 cut(s)	132, 192, 215, 363, 392, 435
SfcI	CTRYAG	1 cut(s)	362
SpeI	ACTAGT	1 cut(s)	443
SsiI	CCGC	4 cut(s)	254, 263, 275, 367
SspMI	CTAG	2 cut(s)	191, 444
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	420
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	1 cut(s)	206
TauI	GCSGC	2 cut(s)	257, 278
TfiI	GAWTC	2 cut(s)	133, 159
Tru1I	TTAA	1 cut(s)	440
Tru9I	TTAA	1 cut(s)	440
TscAI	CASTG	1 cut(s)	23
TseI	GCWGC	2 cut(s)	361, 364
TspDTI	ATGAA	2 cut(s)	91, 441
TspGWI	ACGGA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	39
XceI	RCATGY	1 cut(s)	73
XspI	CTAG	2 cut(s)	191, 444
Zsp2I	ATGCAT	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.