Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002677.1

Orthogroup ID

OG0020613

Physical Location & Seq

Genomic Coordinates Forward (+)

108007 .. 110122

Gene Structure 2116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002677.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgcgttgttgtttgttcattgaggagggaaatgaaaaggaggagttggagctgaatctggggctgtctttgggaggaagatttggagtggacaagagcgagaaaagcaagctattccgatcttccttgattgcgttgactatgccgttttgtagggaagagaacgacgactcggcggcgaaggaggcgtcgtactcggggctgatgagggcgtcctcgcttctgacggagacggaggaggagtggaggaagagaaaggagttgcagacgctgcgacggttggcggcgaagcggaggaacaacagcagcaacaacaaggaggaagagatggcattaattaggtcagtttgggaacttcaatttcgtgcgggccctacttttggtgagttggaaatgccatgtcagcaattaatgtttgaaattgaggggcgtcttccggtgccattcgtatctagtgtgagatgcgggcatgtgcagcggaggggagtattctcggatttgggattggtgacgaatgatatctctggtcgaaaagttggtgtgaggcagcggcggatctattttctgtttgtccgcggtgcacccttattggcgtctcttcgaaggaggtccctcgaggcggtgggaagccgagaatggttgaagatcgaggtcatccatcagaatggcagtggcggtttgcttgcttggtgtggtagcagtgccacaagaaagctccctagggttccggtgattgatggtctgggttgcagattgagggcagcaggtgtgggctgggtttctggcttcaattcattctccctcatctctcttgcttgggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0023052 GO:0032870 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0097305 GO:0097306 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

274

Amino Acids

30.79

Weight (kDa)

9.53

Isoelectric Point (pI)

61.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020613)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000003618 RLG00000019629 RLG00000036609
rosa_multiflora	Rmu_sc0002677.1_g000021
rosa_rugosa	Rorug05G0349200 Rorug06G0268500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	755
AbsI	CCTCGAGG	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	755
AccB1I	GGYRCC	1 cut(s)	439
AccII	CGCG	1 cut(s)	576
AclWI	GGATC	1 cut(s)	563
AcyI	GRCGYC	4 cut(s)	188, 212, 430, 593
AfaI	GTAC	1 cut(s)	194
AfiI	CCNNNNNNNGG	2 cut(s)	380, 619
AgsI	TTSAA	4 cut(s)	359, 419, 643, 790
AluBI	AGCT	3 cut(s)	52, 112, 715
AluI	AGCT	3 cut(s)	52, 112, 715
Alw21I	GWGCWC	1 cut(s)	583
Alw26I	GTCTC	2 cut(s)	224, 600
Alw44I	GTGCAC	1 cut(s)	579
AlwI	GGATC	1 cut(s)	563
AlwNI	CAGNNNCTG	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	196, 614
AoxI	GGCC	2 cut(s)	370, 819
ApaI	GGGCCC	1 cut(s)	374
ApaLI	GTGCAC	1 cut(s)	579
ApeKI	GCWGC	5 cut(s)	271, 306, 475, 547, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	173, 205
AseI	ATTAAT	2 cut(s)	335, 410
AspA2I	CCTAGG	1 cut(s)	719
AspS9I	GGNCC	4 cut(s)	370, 371, 609, 819
AsuHPI	GGTGA	3 cut(s)	395, 520, 742
AsuII	TTCGAA	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	196, 614
AvaII	GGWCC	1 cut(s)	609
AvrII	CCTAGG	1 cut(s)	719
BaeGI	GKGCMC	2 cut(s)	374, 583
BanI	GGYRCC	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	374
BbsI	GAAGAC	1 cut(s)	425
Bbv12I	GWGCWC	1 cut(s)	583
BbvI	GCAGC	5 cut(s)	258, 318, 487, 559, 773
BccI	CCATC	3 cut(s)	322, 666, 731
BceAI	ACGGC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	224, 600
BfaI	CTAG	2 cut(s)	453, 720
BfuAI	ACCTGC	1 cut(s)	755
BisI	GCNGC	8 cut(s)	177, 272, 285, 307, 476, 548, 551, 762
BlnI	CCTAGG	1 cut(s)	719
BlsI	GCNGC	8 cut(s)	178, 273, 286, 308, 477, 549, 552, 763
Bme18I	GGWCC	1 cut(s)	609
BmeT110I	CYCGRG	2 cut(s)	196, 614
BmgT120I	GGNCC	4 cut(s)	370, 371, 609, 819
BmiI	GGNNCC	4 cut(s)	372, 441, 611, 726
BmsI	GCATC	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	425
Bpu14I	TTCGAA	1 cut(s)	601
BsaHI	GRCGYC	4 cut(s)	188, 212, 430, 593
BsaJI	CCNNGG	2 cut(s)	574, 719
BsaWI	WCCGGW	2 cut(s)	436, 727
BsaXI	ACNNNNNCTCC	4 cut(s)	176, 206, 227, 257
Bsc4I	CCNNNNNNNGG	2 cut(s)	380, 619
BseDI	CCNNGG	2 cut(s)	574, 719
BseGI	GGATG	1 cut(s)	654
BseLI	CCNNNNNNNGG	2 cut(s)	380, 619
BseRI	GAGGAG	4 cut(s)	38, 56, 251, 254
BseSI	GKGCMC	2 cut(s)	374, 583
BseXI	GCAGC	5 cut(s)	258, 318, 487, 559, 773
BseYI	CCCAGC	1 cut(s)	774
BsgI	GTGCAG	1 cut(s)	494
Bsh1236I	CGCG	1 cut(s)	576
BshFI	GGCC	2 cut(s)	372, 821
BshNI	GGYRCC	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	583
BsiHKCI	CYCGRG	2 cut(s)	196, 614
BsiSI	CCGG	2 cut(s)	437, 728
BslFI	GGGAC	1 cut(s)	595
BslI	CCNNNNNNNGG	2 cut(s)	380, 619
BsmAI	GTCTC	2 cut(s)	224, 600
BsmBI	CGTCTC	2 cut(s)	224, 600
BsmFI	GGGAC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	372, 821
BsoBI	CYCGRG	2 cut(s)	196, 614
Bsp119I	TTCGAA	1 cut(s)	601
Bsp120I	GGGCCC	1 cut(s)	370
Bsp1286I	GDGCHC	2 cut(s)	374, 583
Bsp143I	GATC	3 cut(s)	119, 555, 645
BspANI	GGCC	2 cut(s)	372, 821
BspFNI	CGCG	1 cut(s)	576
BspLI	GGNNCC	4 cut(s)	372, 441, 611, 726
BspMI	ACCTGC	1 cut(s)	755
BspPI	GGATC	1 cut(s)	563
BspT104I	TTCGAA	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	574, 719
BssMI	GATC	3 cut(s)	119, 555, 645
BssNI	GRCGYC	4 cut(s)	188, 212, 430, 593
BssT1I	CCWWGG	1 cut(s)	719
Bst4CI	ACNGT	1 cut(s)	279
Bst6I	CTCTTC	4 cut(s)	153, 245, 318, 603
BstACI	GRCGYC	4 cut(s)	188, 212, 430, 593
BstAPI	GCANNNNNTGC	1 cut(s)	271
BstBI	TTCGAA	1 cut(s)	601
BstC8I	GCNNGC	4 cut(s)	110, 370, 467, 684
BstDSI	CCRYGG	1 cut(s)	574
BstF5I	GGATG	1 cut(s)	654
BstFNI	CGCG	1 cut(s)	576
BstKTI	GATC	3 cut(s)	122, 558, 648
BstMAI	GTCTC	2 cut(s)	224, 600
BstMBI	GATC	3 cut(s)	119, 555, 645
BstMWI	GCNNNNNNNGC	5 cut(s)	105, 185, 271, 403, 475
BstNSI	RCATGY	1 cut(s)	473
BstSLI	GKGCMC	2 cut(s)	374, 583
BstUI	CGCG	1 cut(s)	576
BstV1I	GCAGC	5 cut(s)	258, 318, 487, 559, 773
BstV2I	GAAGAC	1 cut(s)	425
BstX2I	RGATCY	1 cut(s)	555
BstXI	CCANNNNNNTGG	1 cut(s)	665
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	2 cut(s)	372, 821
BtgI	CCRYGG	1 cut(s)	574
BtsCI	GGATG	1 cut(s)	654
BtsI	GCAGTG	2 cut(s)	676, 706
BtsIMutI	CAGTG	2 cut(s)	676, 706
BveI	ACCTGC	1 cut(s)	755
Cac8I	GCNNGC	4 cut(s)	110, 370, 467, 684
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	4 cut(s)	370, 371, 609, 819
Cfr42I	CCGCGG	1 cut(s)	577
CseI	GACGC	5 cut(s)	177, 201, 277, 419, 582
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	399, 470
CviQI	GTAC	1 cut(s)	193
DpnI	GATC	3 cut(s)	121, 557, 647
DpnII	GATC	3 cut(s)	119, 555, 645
Eam1104I	CTCTTC	4 cut(s)	153, 245, 318, 603
EarI	CTCTTC	4 cut(s)	153, 245, 318, 603
EciI	GGCGGA	1 cut(s)	568
Eco130I	CCWWGG	1 cut(s)	719
Eco24I	GRGCYC	1 cut(s)	374
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	609
Eco88I	CYCGRG	2 cut(s)	196, 614
EcoO109I	RGGNCCY	2 cut(s)	371, 609
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	1 cut(s)	719
EcoT38I	GRGCYC	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	719
Esp3I	CGTCTC	2 cut(s)	224, 600
FaeI	CATG	2 cut(s)	402, 473
FaiI	YATR	3 cut(s)	143, 400, 471
FaqI	GGGAC	1 cut(s)	595
FatI	CATG	2 cut(s)	398, 469
FauI	CCCGC	2 cut(s)	361, 458
Fnu4HI	GCNGC	8 cut(s)	177, 272, 285, 307, 476, 548, 551, 762
FokI	GGATG	1 cut(s)	641
FriOI	GRGCYC	1 cut(s)	374
Fsp4HI	GCNGC	8 cut(s)	177, 272, 285, 307, 476, 548, 551, 762
FspBI	CTAG	2 cut(s)	453, 720
GluI	GCNGC	8 cut(s)	177, 272, 285, 307, 476, 548, 551, 762
GsaI	CCCAGC	1 cut(s)	778
HaeIII	GGCC	2 cut(s)	372, 821
HapII	CCGG	2 cut(s)	437, 728
HgaI	GACGC	5 cut(s)	177, 201, 277, 419, 582
Hin1I	GRCGYC	4 cut(s)	188, 212, 430, 593
Hin1II	CATG	2 cut(s)	402, 473
HincII	GTYRAC	1 cut(s)	138
HindII	GTYRAC	1 cut(s)	138
HinfI	GANTC	2 cut(s)	55, 170
HpaII	CCGG	2 cut(s)	437, 728
HphI	GGTGA	3 cut(s)	395, 520, 742
Hpy166II	GTNNAC	3 cut(s)	91, 138, 581
Hpy188I	TCNGA	4 cut(s)	119, 225, 496, 663
Hpy8I	GTNNAC	3 cut(s)	91, 138, 581
Hpy99I	CGWCG	3 cut(s)	170, 193, 279
HpyAV	CCTTC	2 cut(s)	175, 597
HpyCH4III	ACNGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	265, 475, 581, 750
HpyF10VI	GCNNNNNNNGC	5 cut(s)	105, 185, 271, 403, 475
Hsp92I	GRCGYC	4 cut(s)	188, 212, 430, 593
Hsp92II	CATG	2 cut(s)	402, 473
KspI	CCGCGG	1 cut(s)	577
Kzo9I	GATC	3 cut(s)	119, 555, 645
LmnI	GCTCC	2 cut(s)	49, 720
LpnPI	CCDG	8 cut(s)	44, 450, 510, 728, 741, 750, 760, 768
Lsp1109I	GCAGC	5 cut(s)	258, 318, 487, 559, 773
LweI	GCATC	1 cut(s)	452
MaeI	CTAG	2 cut(s)	453, 720
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	3 cut(s)	121, 557, 647
MboI	GATC	3 cut(s)	119, 555, 645
MboII	GAAGA	8 cut(s)	90, 114, 170, 262, 335, 425, 590, 655
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	2 cut(s)	374, 583
MluCI	AATT	5 cut(s)	336, 359, 407, 420, 790
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	27, 369
MseI	TTAA	2 cut(s)	335, 410
MslI	CAYNNNNRTG	1 cut(s)	663
MspA1I	CMGCKG	3 cut(s)	478, 550, 576
MspI	CCGG	2 cut(s)	437, 728
MvnI	CGCG	1 cut(s)	576
MwoI	GCNNNNNNNGC	5 cut(s)	105, 185, 271, 403, 475
NdeII	GATC	3 cut(s)	119, 555, 645
NlaIII	CATG	2 cut(s)	402, 473
NlaIV	GGNNCC	4 cut(s)	372, 441, 611, 726
NmeAIII	GCCGAG	2 cut(s)	152, 656
NmuCI	GTSAC	1 cut(s)	508
NspI	RCATGY	1 cut(s)	473
NspV	TTCGAA	1 cut(s)	601
PaeR7I	CTCGAG	1 cut(s)	614
PaqCI	CACCTGC	1 cut(s)	755
PfeI	GAWTC	1 cut(s)	55
PkrI	GCNGC	8 cut(s)	178, 273, 286, 308, 477, 549, 552, 763
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	1 cut(s)	609
PshBI	ATTAAT	2 cut(s)	335, 410
Psp5II	RGGWCCY	1 cut(s)	609
PspFI	CCCAGC	1 cut(s)	774
PspN4I	GGNNCC	4 cut(s)	372, 441, 611, 726
PspOMI	GGGCCC	1 cut(s)	370
PspPI	GGNCC	4 cut(s)	370, 371, 609, 819
PspPPI	RGGWCCY	1 cut(s)	609
PspXI	VCTCGAGB	1 cut(s)	614
PstNI	CAGNNNCTG	1 cut(s)	271
PsuI	RGATCY	1 cut(s)	555
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	663
SacII	CCGCGG	1 cut(s)	577
SaqAI	TTAA	2 cut(s)	335, 410
SatI	GCNGC	8 cut(s)	177, 272, 285, 307, 476, 548, 551, 762
Sau3AI	GATC	3 cut(s)	119, 555, 645
Sau96I	GGNCC	4 cut(s)	370, 371, 609, 819
SchI	GAGTC	1 cut(s)	164
SduI	GDGCHC	2 cut(s)	374, 583
SetI	ASST	7 cut(s)	54, 114, 344, 611, 654, 717, 769
SfaNI	GCATC	1 cut(s)	452
Sfr274I	CTCGAG	1 cut(s)	614
Sfr303I	CCGCGG	1 cut(s)	577
SfuI	TTCGAA	1 cut(s)	601
SgrBI	CCGCGG	1 cut(s)	577
SinI	GGWCC	1 cut(s)	609
SlaI	CTCGAG	1 cut(s)	614
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	5 cut(s)	336, 359, 407, 420, 790
SspMI	CTAG	2 cut(s)	453, 720
StyI	CCWWGG	1 cut(s)	719
TaaI	ACNGT	1 cut(s)	279
TaqI	TCGA	4 cut(s)	529, 601, 615, 648
TasI	AATT	5 cut(s)	336, 359, 407, 420, 790
TauI	GCSGC	3 cut(s)	179, 287, 553
TfiI	GAWTC	1 cut(s)	55
Tru1I	TTAA	2 cut(s)	335, 410
Tru9I	TTAA	2 cut(s)	335, 410
TscAI	CASTG	2 cut(s)	676, 706
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	5 cut(s)	271, 306, 475, 547, 761
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	3 cut(s)	7, 48, 783
TspGWI	ACGGA	2 cut(s)	242, 248
TspRI	CASTG	2 cut(s)	676, 706
VneI	GTGCAC	1 cut(s)	579
VpaK11BI	GGWCC	1 cut(s)	609
VspI	ATTAAT	2 cut(s)	335, 410
XceI	RCATGY	1 cut(s)	473
XhoI	CTCGAG	1 cut(s)	614
XmaJI	CCTAGG	1 cut(s)	719
XspI	CTAG	2 cut(s)	453, 720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.