RLG00000004441

Nuclear pore complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0021493
Physical Location & Seq
Forward (+)
59392620 .. 59394943
2324 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004441

Sequence Viewer

Length: 468 bp
ATGGTGGCATCGTCATTCAATGATCTTGGTGCAGACCAAGATGATGATTGTGATCCACCTTGTAATGATGCAGGTCCACCATTATCAAATCCAGATGGAGGGTCAGATCTTCCTGCAGCATTAGGATCAGGGGCCGTAATCGATGATGTGTTGGTTCAACTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACTGAATTGCAACCGAGACTTTGCGAATGGCTCAGTCACGGGAAGACTCTACTCTAATAAGGAAGATAAACCTAGGAACGGTAGGAAACCAGAAGACGGAAGTGGGCAGACTTGCGTAAACTACGACACGTCGTTCCAACCAATTGGTCTGTATCTGACTAGCTTTGGGGGGTGGATTCAGTCCCCGAGACTGAGATGGGAAGATTACCAATTGGGGGATAAAGGTGGAGCGGTACCTCGTGGTGGGAGTGGCTTCAGCCAGTTTACCACAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000972 GO:0000973 GO:0003674 GO:0003676 GO:0003682 GO:0003712 GO:0003713 GO:0003723 GO:0003729 GO:0005048 GO:0005198 GO:0005215 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005654 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006260 GO:0006403 GO:0006405 GO:0006406 GO:0006606 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0006997 GO:0006999 GO:0008104 GO:0008139 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016020 GO:0016032 GO:0016043 GO:0016234 GO:0016604 GO:0017038 GO:0017056 GO:0019219 GO:0019222 GO:0022607 GO:0031080 GO:0031090 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031503 GO:0031965 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032991 GO:0033036 GO:0033120 GO:0033218 GO:0033365 GO:0034397 GO:0034398 GO:0034399 GO:0034504 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0042277 GO:0042405 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043484 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044614 GO:0044615 GO:0045184 GO:0045935 GO:0046483 GO:0046907 GO:0046931 GO:0048024 GO:0048026 GO:0048518 GO:0048522 GO:0048583 GO:0050000 GO:0050657 GO:0050658 GO:0050684 GO:0050685 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051170 GO:0051171 GO:0051173 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051254 GO:0051276 GO:0051292 GO:0051640 GO:0051641 GO:0051649 GO:0051704 GO:0060255 GO:0065003 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0072594 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901360 GO:1901363 GO:1901576 GO:1902446 GO:1902680 GO:1903311 GO:1903313 GO:1903506 GO:1903508 GO:1990841 GO:1990904 GO:2000030 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03013 ko05164 map03013 map05164
Pfam Domains
Protein Families
Nucleoporin2

Protein Analysis

156

Amino Acids

16.49

Weight (kDa)

4.25

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021493)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004441
rosa_multiflora Rmu_sc0002161.1_g000030
rosa_roxburghii Rroxscaffold_157G00438460 Rroxscaffold_1G00053020 Rroxscaffold_7G00176230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 62, 174
Acc65I GGTACC 1 cut(s) 424
AccB1I GGYRCC 1 cut(s) 424
AccBSI CCGCTC 1 cut(s) 422
AciI CCGC 1 cut(s) 422
AclWI GGATC 2 cut(s) 47, 133
AcsI RAATTY 1 cut(s) 163
AcuI CTGAAG 1 cut(s) 430
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 5 cut(s) 98, 269, 287, 406, 434
AflIII ACRYGT 1 cut(s) 318
AgsI TTSAA 2 cut(s) 19, 158
AjiI CACGTC 1 cut(s) 321
AluBI AGCT 1 cut(s) 354
AluI AGCT 1 cut(s) 354
Alw26I GTCTC 2 cut(s) 201, 373
AlwI GGATC 2 cut(s) 47, 133
Ama87I CYCGRG 1 cut(s) 376
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 2 cut(s) 116, 180
ApoI RAATTY 1 cut(s) 163
Asp718I GGTACC 1 cut(s) 424
AspA2I CCTAGG 1 cut(s) 263
AspS9I GGNCC 2 cut(s) 74, 132
AvaI CYCGRG 1 cut(s) 376
AvaII GGWCC 1 cut(s) 74
AvrII CCTAGG 1 cut(s) 263
BanI GGYRCC 1 cut(s) 424
BauI CACGAG 1 cut(s) 429
BbsI GAAGAC 2 cut(s) 241, 291
BbvI GCAGC 2 cut(s) 128, 192
BccI CCATC 2 cut(s) 89, 381
BceAI ACGGC 1 cut(s) 119
BcoDI GTCTC 2 cut(s) 201, 373
BfaI CTAG 2 cut(s) 264, 351
BfmI CTRYAG 1 cut(s) 114
BfuAI ACCTGC 2 cut(s) 62, 174
BglII AGATCT 1 cut(s) 106
BisI GCNGC 2 cut(s) 117, 181
BlnI CCTAGG 1 cut(s) 263
BlsI GCNGC 2 cut(s) 118, 182
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 376
BmgBI CACGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 74, 132
BmiI GGNNCC 2 cut(s) 133, 426
BmsI GCATC 2 cut(s) 17, 58
BpiI GAAGAC 2 cut(s) 241, 291
Bsa29I ATCGAT 1 cut(s) 141
BsaBI GATNNNNATC 1 cut(s) 51
BsaJI CCNNGG 1 cut(s) 263
Bsc4I CCNNNNNNNGG 5 cut(s) 98, 269, 287, 406, 434
Bse1I ACTGG 1 cut(s) 451
Bse8I GATNNNNATC 1 cut(s) 51
BseCI ATCGAT 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 263
BseJI GATNNNNATC 1 cut(s) 51
BseLI CCNNNNNNNGG 5 cut(s) 98, 269, 287, 406, 434
BseMII CTCAG 2 cut(s) 237, 374
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 2 cut(s) 128, 192
BsgI GTGCAG 1 cut(s) 51
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 1 cut(s) 424
BshVI ATCGAT 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 358
BslI CCNNNNNNNGG 5 cut(s) 98, 269, 287, 406, 434
BsmAI GTCTC 2 cut(s) 201, 373
BsmFI GGGAC 1 cut(s) 358
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 1 cut(s) 376
Bsp143I GATC 4 cut(s) 22, 52, 106, 125
BspACI CCGC 1 cut(s) 422
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 236, 375
BspDI ATCGAT 1 cut(s) 141
BspLI GGNNCC 2 cut(s) 133, 426
BspMAI CTGCAG 1 cut(s) 118
BspMI ACCTGC 2 cut(s) 62, 174
BspPI GGATC 2 cut(s) 47, 133
BspT107I GGYRCC 1 cut(s) 424
BsrBI CCGCTC 1 cut(s) 422
BsrI ACTGG 1 cut(s) 451
BssECI CCNNGG 1 cut(s) 263
BssMI GATC 4 cut(s) 22, 52, 106, 125
BssSI CACGAG 1 cut(s) 429
BssT1I CCWWGG 1 cut(s) 263
Bst2BI CACGAG 1 cut(s) 429
Bst4CI ACNGT 1 cut(s) 272
BstDEI CTNAG 2 cut(s) 223, 383
BstKTI GATC 4 cut(s) 25, 55, 109, 128
BstMAI GTCTC 2 cut(s) 201, 373
BstMBI GATC 4 cut(s) 22, 52, 106, 125
BstSFI CTRYAG 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 128, 192
BstV2I GAAGAC 2 cut(s) 241, 291
BstX2I RGATCY 1 cut(s) 106
BstXI CCANNNNNNTGG 1 cut(s) 335
BstYI RGATCY 1 cut(s) 106
Bsu15I ATCGAT 1 cut(s) 141
BsuRI GGCC 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 141
BtrI CACGTC 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 191
BveI ACCTGC 2 cut(s) 62, 174
Cfr13I GGNCC 2 cut(s) 74, 132
ClaI ATCGAT 1 cut(s) 141
Csp6I GTAC 1 cut(s) 425
CviJI RGCY 5 cut(s) 134, 222, 354, 444, 450
CviKI_1 RGCY 5 cut(s) 134, 222, 354, 444, 450
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 2 cut(s) 223, 383
DpnI GATC 4 cut(s) 24, 54, 108, 127
DpnII GATC 4 cut(s) 22, 52, 106, 125
Eco130I CCWWGG 1 cut(s) 263
Eco47I GGWCC 1 cut(s) 74
Eco57I CTGAAG 1 cut(s) 430
Eco88I CYCGRG 1 cut(s) 376
EcoT14I CCWWGG 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 263
FaqI GGGAC 1 cut(s) 358
Fnu4HI GCNGC 2 cut(s) 117, 181
Fsp4HI GCNGC 2 cut(s) 117, 181
FspBI CTAG 2 cut(s) 264, 351
GluI GCNGC 2 cut(s) 117, 181
HaeIII GGCC 1 cut(s) 134
HinfI GANTC 2 cut(s) 237, 367
Hpy166II GTNNAC 3 cut(s) 77, 310, 456
Hpy188I TCNGA 2 cut(s) 106, 348
Hpy188III TCNNGA 1 cut(s) 92
Hpy8I GTNNAC 3 cut(s) 77, 310, 456
Hpy99I CGWCG 1 cut(s) 325
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4IV ACGT 1 cut(s) 320
HpyCH4V TGCA 4 cut(s) 32, 71, 116, 201
HpyF3I CTNAG 2 cut(s) 223, 383
HpySE526I ACGT 1 cut(s) 320
KpnI GGTACC 1 cut(s) 428
Kzo9I GATC 4 cut(s) 22, 52, 106, 125
LmnI GCTCC 1 cut(s) 419
LpnPI CCDG 7 cut(s) 57, 105, 114, 126, 169, 294, 464
Lsp1109I GCAGC 2 cut(s) 128, 192
LweI GCATC 2 cut(s) 17, 58
MaeI CTAG 2 cut(s) 264, 351
MaeII ACGT 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 226
MalI GATC 4 cut(s) 24, 54, 108, 127
MbiI CCGCTC 1 cut(s) 422
MboI GATC 4 cut(s) 22, 52, 106, 125
MboII GAAGA 6 cut(s) 101, 182, 246, 266, 296, 404
MfeI CAATTG 2 cut(s) 333, 401
MflI RGATCY 1 cut(s) 106
MluCI AATT 5 cut(s) 163, 174, 196, 333, 401
MlyI GAGTC 1 cut(s) 231
MmeI TCCRAC 1 cut(s) 352
MnlI CCTC 2 cut(s) 92, 438
MunI CAATTG 2 cut(s) 333, 401
NdeII GATC 4 cut(s) 22, 52, 106, 125
NlaIV GGNNCC 2 cut(s) 133, 426
NmuCI GTSAC 1 cut(s) 226
PfeI GAWTC 1 cut(s) 367
PkrI GCNGC 2 cut(s) 118, 182
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
PspN4I GGNNCC 2 cut(s) 133, 426
PspPI GGNCC 2 cut(s) 74, 132
PstI CTGCAG 1 cut(s) 118
PsuI RGATCY 1 cut(s) 106
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SatI GCNGC 2 cut(s) 117, 181
Sau3AI GATC 4 cut(s) 22, 52, 106, 125
Sau96I GGNCC 2 cut(s) 74, 132
SchI GAGTC 1 cut(s) 231
SetI ASST 8 cut(s) 61, 76, 188, 265, 323, 356, 418, 430
SfaNI GCATC 2 cut(s) 17, 58
SfcI CTRYAG 1 cut(s) 114
SinI GGWCC 1 cut(s) 74
Sse9I AATT 5 cut(s) 163, 174, 196, 333, 401
SsiI CCGC 1 cut(s) 422
SspMI CTAG 2 cut(s) 264, 351
StyI CCWWGG 1 cut(s) 263
TaaI ACNGT 1 cut(s) 272
TaiI ACGT 1 cut(s) 323
TaqI TCGA 1 cut(s) 141
TasI AATT 5 cut(s) 163, 174, 196, 333, 401
TfiI GAWTC 1 cut(s) 367
TscAI CASTG 1 cut(s) 198
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 2 cut(s) 116, 180
Tsp45I GTSAC 1 cut(s) 226
TspGWI ACGGA 1 cut(s) 303
TspRI CASTG 1 cut(s) 198
VpaK11BI GGWCC 1 cut(s) 74
XapI RAATTY 1 cut(s) 163
XmaJI CCTAGG 1 cut(s) 263
XspI CTAG 2 cut(s) 264, 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.