Rroxscaffold_1G00053020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0021493
Physical Location & Seq
Forward (+)
73839136 .. 73846392
7257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053020.1

Sequence Viewer

Length: 819 bp
ATGATTGATTTCTACATAAGGTTCTTGAATTCGAGCTCCAACTCTTCGGACTTGAGTTGCGGAAGTGGGTTTTCTTCATCGGAGTCGGACTTCATGTACGGGTTCGAGATCGAGGTCGTCGTCTTCGTGCTACGACATACGAGGCCCAAACCCATCGGACCGGTGTCTTATCGACTTGACCGAAACCCATCGGAAGCCGATGCAAGAAAACGAGTTCATGAAGACGAAACCCAAGGCGTTGAAGATTTACGGCGACTTGAAGAAGGTGAAGCAACCAATCTCGCCGGTGGACGGGAGGACAAGTACGAAAAAGTCCTGGTCCTGCCACCGTCAGCACTGAGGTACTGCCAGTGCGGATCACTGTTTGGCACATATTTGTTGCGTGATCGAGACGACGACGTTTTGGAGCGTATGGGCACTGTTGGGATTCCCGAAGCGTGTCCTACGCGCCTACGGGTTTTAGGGTACAGAGCTAGGTGTGGGGTACTTGTGCAGTGGTACTTTGGCCTGGTGGCCTCAGGCTTGGAGGTTGGGAGGAGTGAATGGGGAATCAATGGCGGTAGGGATGTGCTGGATTTGAAGAGTCCTGGACTATTATATGAAATAAGCTTGGGGATAATAGTCCCACGTAACAAACACAGCCTTACTATCTTCACTATAGTTGCCACCACCATGATATTGAGCATACGATATGTACACCGAGTTGTGGGTGATGGGTTGGTGGCGAAGATAATGTGGGTTAGTACCGAGAGAACTAGCGACTTCCGGAAAATTTATGATATTCATAAGAGGGAGATACGAATAATTATTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.76

Weight (kDa)

6.55

Isoelectric Point (pI)

40.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021493)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004441
rosa_multiflora Rmu_sc0002161.1_g000030
rosa_roxburghii Rroxscaffold_157G00438460 Rroxscaffold_1G00053020 Rroxscaffold_7G00176230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 448
AccIII TCCGGA 1 cut(s) 765
AciI CCGC 3 cut(s) 60, 354, 558
AclWI GGATC 1 cut(s) 364
AcsI RAATTY 2 cut(s) 28, 771
AfaI GTAC 8 cut(s) 98, 305, 344, 467, 486, 500, 696, 745
AfiI CCNNNNNNNGG 2 cut(s) 291, 706
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 28, 242, 260, 580, 812
AjnI CCWGG 3 cut(s) 315, 507, 586
AluBI AGCT 3 cut(s) 36, 473, 609
AluI AGCT 3 cut(s) 36, 473, 609
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 364
Aor13HI TCCGGA 1 cut(s) 765
AoxI GGCC 3 cut(s) 143, 505, 513
ApoI RAATTY 2 cut(s) 28, 771
AsiGI ACCGGT 1 cut(s) 160
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 3 cut(s) 144, 158, 319
AsuHPI GGTGA 2 cut(s) 278, 722
AvaII GGWCC 2 cut(s) 158, 319
AxyI CCTNAGG 1 cut(s) 517
BaeGI GKGCMC 1 cut(s) 419
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 2 cut(s) 115, 228
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 3 cut(s) 161, 196, 707
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 3 cut(s) 317, 509, 588
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 2 cut(s) 474, 756
BfmI CTRYAG 1 cut(s) 657
Bme1390I CCNGG 3 cut(s) 317, 509, 588
Bme18I GGWCC 2 cut(s) 158, 319
BmgT120I GGNCC 3 cut(s) 144, 158, 319
BmrFI CCNGG 3 cut(s) 317, 509, 588
BmsI GCATC 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 163
BpiI GAAGAC 2 cut(s) 115, 228
BpuEI CTTGAG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 629
BsaJI CCNNGG 1 cut(s) 232
BsaWI WCCGGW 2 cut(s) 160, 765
BsaXI ACNNNNNCTCC 2 cut(s) 287, 317
Bsc4I CCNNNNNNNGG 2 cut(s) 291, 706
Bse118I RCCGGY 2 cut(s) 160, 284
Bse1I ACTGG 1 cut(s) 349
Bse21I CCTNAGG 1 cut(s) 517
BseAI TCCGGA 1 cut(s) 765
BseBI CCWGG 3 cut(s) 317, 509, 588
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 571
BseLI CCNNNNNNNGG 2 cut(s) 291, 706
BseMII CTCAG 2 cut(s) 329, 531
BseNI ACTGG 1 cut(s) 349
BseRI GAGGAG 1 cut(s) 550
BseSI GKGCMC 1 cut(s) 419
BsgI GTGCAG 1 cut(s) 512
Bsh1236I CGCG 1 cut(s) 448
BshFI GGCC 3 cut(s) 145, 507, 515
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 3 cut(s) 161, 285, 766
BslFI GGGAC 1 cut(s) 608
BslI CCNNNNNNNGG 2 cut(s) 291, 706
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsmFI GGGAC 1 cut(s) 608
BsnI GGCC 3 cut(s) 145, 507, 515
Bsp1286I GDGCHC 2 cut(s) 38, 419
Bsp13I TCCGGA 1 cut(s) 765
Bsp1407I TGTACA 1 cut(s) 694
Bsp143I GATC 3 cut(s) 108, 356, 385
BspACI CCGC 3 cut(s) 60, 354, 558
BspANI GGCC 3 cut(s) 145, 507, 515
BspCNI CTCAG 2 cut(s) 330, 530
BspEI TCCGGA 1 cut(s) 765
BspFNI CGCG 1 cut(s) 448
BspHI TCATGA 1 cut(s) 217
BspPI GGATC 1 cut(s) 364
BsrFI RCCGGY 2 cut(s) 160, 284
BsrGI TGTACA 1 cut(s) 694
BsrI ACTGG 1 cut(s) 349
BssAI RCCGGY 2 cut(s) 160, 284
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 108, 356, 385
BssT1I CCWWGG 1 cut(s) 232
Bst2UI CCWGG 3 cut(s) 317, 509, 588
Bst4CI ACNGT 3 cut(s) 330, 363, 421
Bst6I CTCTTC 2 cut(s) 49, 575
BstAUI TGTACA 1 cut(s) 694
BstBAI YACGTR 1 cut(s) 629
BstDEI CTNAG 2 cut(s) 338, 517
BstF5I GGATG 1 cut(s) 571
BstFNI CGCG 1 cut(s) 448
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 3 cut(s) 111, 359, 388
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 3 cut(s) 108, 356, 385
BstNI CCWGG 3 cut(s) 317, 509, 588
BstPAI GACNNNNGTC 1 cut(s) 163
BstSCI CCNGG 3 cut(s) 315, 507, 586
BstSFI CTRYAG 1 cut(s) 657
BstSLI GKGCMC 1 cut(s) 419
BstUI CGCG 1 cut(s) 448
BstV2I GAAGAC 2 cut(s) 115, 228
Bsu36I CCTNAGG 1 cut(s) 517
BsuRI GGCC 3 cut(s) 145, 507, 515
BtsCI GGATG 1 cut(s) 571
BtsI GCAGTG 1 cut(s) 500
BtsIMutI CAGTG 5 cut(s) 335, 356, 359, 417, 500
CciI TCATGA 1 cut(s) 217
CfoI GCGC 1 cut(s) 450
Cfr10I RCCGGY 2 cut(s) 160, 284
Cfr13I GGNCC 3 cut(s) 144, 158, 319
CpoI CGGWCCG 1 cut(s) 158
Csp6I GTAC 8 cut(s) 97, 304, 343, 466, 485, 499, 695, 744
CspAI ACCGGT 1 cut(s) 160
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 3 cut(s) 94, 218, 673
CviJI RGCY 9 cut(s) 36, 145, 197, 473, 507, 515, 522, 609, 642
CviKI_1 RGCY 9 cut(s) 36, 145, 197, 473, 507, 515, 522, 609, 642
CviQI GTAC 8 cut(s) 97, 304, 343, 466, 485, 499, 695, 744
DdeI CTNAG 2 cut(s) 338, 517
DpnI GATC 3 cut(s) 110, 358, 387
DpnII GATC 3 cut(s) 108, 356, 385
Eam1104I CTCTTC 2 cut(s) 49, 575
EarI CTCTTC 2 cut(s) 49, 575
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 232
Eco24I GRGCYC 1 cut(s) 38
Eco47I GGWCC 2 cut(s) 158, 319
Eco53kI GAGCTC 1 cut(s) 36
Eco81I CCTNAGG 1 cut(s) 517
EcoICRI GAGCTC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 28
EcoRII CCWGG 3 cut(s) 315, 507, 586
EcoT14I CCWWGG 1 cut(s) 232
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 232
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 3 cut(s) 97, 221, 676
FaqI GGGAC 1 cut(s) 608
FatI CATG 3 cut(s) 93, 217, 672
FokI GGATG 1 cut(s) 578
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 2 cut(s) 474, 756
GlaI GCGC 1 cut(s) 449
HaeIII GGCC 3 cut(s) 145, 507, 515
HapII CCGG 3 cut(s) 161, 285, 766
HhaI GCGC 1 cut(s) 450
Hin1II CATG 3 cut(s) 97, 221, 676
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HindIII AAGCTT 1 cut(s) 607
HinfI GANTC 4 cut(s) 83, 427, 549, 583
HpaII CCGG 3 cut(s) 161, 285, 766
HphI GGTGA 2 cut(s) 278, 722
Hpy166II GTNNAC 2 cut(s) 290, 697
Hpy188I TCNGA 5 cut(s) 49, 82, 88, 158, 193
Hpy188III TCNNGA 6 cut(s) 25, 106, 218, 389, 431, 766
Hpy8I GTNNAC 2 cut(s) 290, 697
Hpy99I CGWCG 3 cut(s) 122, 398, 401
HpyAV CCTTC 1 cut(s) 257
HpyCH4III ACNGT 3 cut(s) 330, 363, 421
HpyCH4IV ACGT 2 cut(s) 399, 628
HpyCH4V TGCA 2 cut(s) 203, 493
HpyF3I CTNAG 2 cut(s) 338, 517
HpySE526I ACGT 2 cut(s) 399, 628
Hsp92II CATG 3 cut(s) 97, 221, 676
HspAI GCGC 1 cut(s) 448
Kpn2I TCCGGA 1 cut(s) 765
Kzo9I GATC 3 cut(s) 108, 356, 385
LmnI GCTCC 2 cut(s) 41, 406
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 474, 756
MaeII ACGT 2 cut(s) 399, 628
MaeIII GTNAC 1 cut(s) 629
MalI GATC 3 cut(s) 110, 358, 387
MboI GATC 3 cut(s) 108, 356, 385
MboII GAAGA 9 cut(s) 36, 66, 115, 233, 254, 272, 592, 643, 739
MhlI GDGCHC 2 cut(s) 38, 419
MluCI AATT 4 cut(s) 28, 771, 804, 814
MlyI GAGTC 2 cut(s) 92, 592
MmeI TCCRAC 2 cut(s) 63, 66
MnlI CCTC 8 cut(s) 106, 135, 289, 333, 520, 526, 528, 783
MroI TCCGGA 1 cut(s) 765
MseI TTAA 1 cut(s) 817
MslI CAYNNNNRTG 1 cut(s) 671
MspI CCGG 3 cut(s) 161, 285, 766
MspR9I CCNGG 3 cut(s) 317, 509, 588
MvaI CCWGG 3 cut(s) 317, 509, 588
MvnI CGCG 1 cut(s) 448
NdeII GATC 3 cut(s) 108, 356, 385
NlaIII CATG 3 cut(s) 97, 221, 676
PagI TCATGA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 123, 178
PfeI GAWTC 2 cut(s) 427, 549
PfoI TCCNGGA 1 cut(s) 586
PinAI ACCGGT 1 cut(s) 160
PleI GAGTC 2 cut(s) 91, 591
PpsI GAGTC 2 cut(s) 91, 591
Ppu21I YACGTR 1 cut(s) 629
PshAI GACNNNNGTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 3 cut(s) 315, 507, 586
PspGI CCWGG 3 cut(s) 315, 507, 586
PspPI GGNCC 3 cut(s) 144, 158, 319
RsaI GTAC 8 cut(s) 98, 305, 344, 467, 486, 500, 696, 745
RsaNI GTAC 8 cut(s) 97, 304, 343, 466, 485, 499, 695, 744
RseI CAYNNNNRTG 1 cut(s) 671
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 1 cut(s) 817
Sau3AI GATC 3 cut(s) 108, 356, 385
Sau96I GGNCC 3 cut(s) 144, 158, 319
SchI GAGTC 2 cut(s) 92, 592
ScrFI CCNGG 3 cut(s) 317, 509, 588
SduI GDGCHC 2 cut(s) 38, 419
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 1 cut(s) 657
SgrAI CRCCGGYG 1 cut(s) 284
SinI GGWCC 2 cut(s) 158, 319
SmiMI CAYNNNNRTG 1 cut(s) 671
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 4 cut(s) 28, 771, 804, 814
SsiI CCGC 3 cut(s) 60, 354, 558
SspMI CTAG 2 cut(s) 474, 756
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 3 cut(s) 315, 507, 586
StyI CCWWGG 1 cut(s) 232
TaaI ACNGT 3 cut(s) 330, 363, 421
TaiI ACGT 2 cut(s) 402, 631
TaqI TCGA 5 cut(s) 32, 105, 111, 172, 388
TaqII GACCGA 1 cut(s) 195
TasI AATT 4 cut(s) 28, 771, 804, 814
TatI WGTACW 1 cut(s) 694
TfiI GAWTC 2 cut(s) 427, 549
Tru1I TTAA 1 cut(s) 817
Tru9I TTAA 1 cut(s) 817
TscAI CASTG 5 cut(s) 342, 356, 366, 424, 500
TspDTI ATGAA 6 cut(s) 66, 82, 206, 234, 615, 773
TspRI CASTG 5 cut(s) 342, 356, 366, 424, 500
VpaK11BI GGWCC 2 cut(s) 158, 319
XapI RAATTY 2 cut(s) 28, 771
XspI CTAG 2 cut(s) 474, 756
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.