Rroxscaffold_157G00438460

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000157
OG0021493
Physical Location & Seq
Forward (+)
124881 .. 128155
3275 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_157G00438460.1

Sequence Viewer

Length: 405 bp
ATGATTGATTTCTACATAAGGTTCTTGAATTCGAGCTCCAACTCTTCGGACTTGAGTTGCGGAAGTGGGTTTTCTTCATCGGAGTCGGACTTCATGTACGGGTTCGAGATCGAGGTCGTCGTCTTCGTGCTACGCATACCGAGGCCCAAACCCATCGGACCGGTGTCTTATCGACTTGACCGAAACCCATCGGAAGCCGATGCAAGAAAACGAGTTCATGAAGACGAAACCCAAGGCGTTGAAGATTTACAGCGACTTGAAGAAGCCTATAATTACAAGGAAGATAAACCTAGGAACGGTAGGAAACCAGAAGACGGAAGTGGGCAGACTTGCGTAAACTACGACACGTCGTTCAACCAATTGGTCCTAGTCATTCAGTCTCCGAGACCGAGACTTGGGGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

15.2

Weight (kDa)

5.06

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0021493)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004441
rosa_multiflora Rmu_sc0002161.1_g000030
rosa_roxburghii Rroxscaffold_157G00438460 Rroxscaffold_1G00053020 Rroxscaffold_7G00176230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 60
AcsI RAATTY 1 cut(s) 28
AfaI GTAC 1 cut(s) 98
AfiI CCNNNNNNNGG 3 cut(s) 296, 314, 395
AflIII ACRYGT 1 cut(s) 345
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 4 cut(s) 28, 242, 260, 355
AjiI CACGTC 1 cut(s) 348
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 3 cut(s) 379, 384, 385
AoxI GGCC 1 cut(s) 143
ApoI RAATTY 1 cut(s) 28
AsiGI ACCGGT 1 cut(s) 160
AspA2I CCTAGG 1 cut(s) 290
AspS9I GGNCC 3 cut(s) 144, 158, 364
AvaII GGWCC 2 cut(s) 158, 364
AvrII CCTAGG 1 cut(s) 290
BanII GRGCYC 1 cut(s) 38
BbsI GAAGAC 3 cut(s) 115, 228, 318
Bbv12I GWGCWC 1 cut(s) 38
BccI CCATC 2 cut(s) 161, 196
BcoDI GTCTC 3 cut(s) 379, 384, 385
BfaI CTAG 2 cut(s) 291, 368
BlnI CCTAGG 1 cut(s) 290
Bme18I GGWCC 2 cut(s) 158, 364
BmgBI CACGTC 1 cut(s) 348
BmgT120I GGNCC 3 cut(s) 144, 158, 364
BmsI GCATC 1 cut(s) 190
BoxI GACNNNNGTC 1 cut(s) 163
BpiI GAAGAC 3 cut(s) 115, 228, 318
BpuEI CTTGAG 1 cut(s) 73
BsaI GGTCTC 1 cut(s) 379
BsaJI CCNNGG 3 cut(s) 140, 232, 290
BsaWI WCCGGW 1 cut(s) 160
Bsc4I CCNNNNNNNGG 3 cut(s) 296, 314, 395
Bse118I RCCGGY 1 cut(s) 160
BseDI CCNNGG 3 cut(s) 140, 232, 290
BseLI CCNNNNNNNGG 3 cut(s) 296, 314, 395
BshFI GGCC 1 cut(s) 145
BshTI ACCGGT 1 cut(s) 160
BsiHKAI GWGCWC 1 cut(s) 38
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 296, 314, 395
BsmAI GTCTC 3 cut(s) 379, 384, 385
BsnI GGCC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 379
Bsp1286I GDGCHC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 108
BspACI CCGC 1 cut(s) 60
BspANI GGCC 1 cut(s) 145
BspHI TCATGA 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 160
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 3 cut(s) 140, 232, 290
BssMI GATC 1 cut(s) 108
BssT1I CCWWGG 2 cut(s) 232, 290
Bst4CI ACNGT 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 49
BstKTI GATC 1 cut(s) 111
BstMAI GTCTC 3 cut(s) 379, 384, 385
BstMBI GATC 1 cut(s) 108
BstPAI GACNNNNGTC 1 cut(s) 163
BstV2I GAAGAC 3 cut(s) 115, 228, 318
BsuRI GGCC 1 cut(s) 145
BtrI CACGTC 1 cut(s) 348
CciI TCATGA 1 cut(s) 217
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 144, 158, 364
CpoI CGGWCCG 1 cut(s) 158
Csp6I GTAC 1 cut(s) 97
CspAI ACCGGT 1 cut(s) 160
CspI CGGWCCG 1 cut(s) 158
CviAII CATG 2 cut(s) 94, 218
CviJI RGCY 4 cut(s) 36, 145, 197, 266
CviKI_1 RGCY 4 cut(s) 36, 145, 197, 266
CviQI GTAC 1 cut(s) 97
DpnI GATC 1 cut(s) 110
DpnII GATC 1 cut(s) 108
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Ecl136II GAGCTC 1 cut(s) 36
Eco130I CCWWGG 2 cut(s) 232, 290
Eco24I GRGCYC 1 cut(s) 38
Eco31I GGTCTC 1 cut(s) 379
Eco47I GGWCC 2 cut(s) 158, 364
Eco53kI GAGCTC 1 cut(s) 36
EcoICRI GAGCTC 1 cut(s) 36
EcoRI GAATTC 1 cut(s) 28
EcoT14I CCWWGG 2 cut(s) 232, 290
EcoT38I GRGCYC 1 cut(s) 38
ErhI CCWWGG 2 cut(s) 232, 290
FaeI CATG 2 cut(s) 97, 221
FaiI YATR 5 cut(s) 17, 95, 137, 219, 270
FatI CATG 2 cut(s) 93, 217
FriOI GRGCYC 1 cut(s) 38
FspBI CTAG 2 cut(s) 291, 368
HaeIII GGCC 1 cut(s) 145
HapII CCGG 1 cut(s) 161
Hin1II CATG 2 cut(s) 97, 221
HinfI GANTC 1 cut(s) 83
HpaII CCGG 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 6 cut(s) 49, 82, 88, 158, 193, 384
Hpy188III TCNNGA 3 cut(s) 25, 106, 218
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 2 cut(s) 122, 352
HpyCH4III ACNGT 1 cut(s) 299
HpyCH4IV ACGT 1 cut(s) 347
HpyCH4V TGCA 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 347
Hsp92II CATG 2 cut(s) 97, 221
Kzo9I GATC 1 cut(s) 108
LmnI GCTCC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 174, 321
LweI GCATC 1 cut(s) 190
MaeI CTAG 2 cut(s) 291, 368
MaeII ACGT 1 cut(s) 347
MalI GATC 1 cut(s) 110
MboI GATC 1 cut(s) 108
MboII GAAGA 8 cut(s) 36, 66, 115, 233, 254, 272, 293, 323
MfeI CAATTG 1 cut(s) 359
MhlI GDGCHC 1 cut(s) 38
MluCI AATT 3 cut(s) 28, 271, 359
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 2 cut(s) 63, 66
MnlI CCTC 2 cut(s) 106, 135
MspI CCGG 1 cut(s) 161
MunI CAATTG 1 cut(s) 359
NdeII GATC 1 cut(s) 108
NlaIII CATG 2 cut(s) 97, 221
PagI TCATGA 1 cut(s) 217
PcsI WCGNNNNNNNCGW 3 cut(s) 117, 123, 178
PinAI ACCGGT 1 cut(s) 160
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PshAI GACNNNNGTC 1 cut(s) 163
Psp124BI GAGCTC 1 cut(s) 38
PspPI GGNCC 3 cut(s) 144, 158, 364
RsaI GTAC 1 cut(s) 98
RsaNI GTAC 1 cut(s) 97
Rsr2I CGGWCCG 1 cut(s) 158
RsrII CGGWCCG 1 cut(s) 158
SacI GAGCTC 1 cut(s) 38
Sau3AI GATC 1 cut(s) 108
Sau96I GGNCC 3 cut(s) 144, 158, 364
SchI GAGTC 1 cut(s) 92
SduI GDGCHC 1 cut(s) 38
SetI ASST 5 cut(s) 23, 38, 117, 292, 350
SfaNI GCATC 1 cut(s) 190
SinI GGWCC 2 cut(s) 158, 364
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
Sse9I AATT 3 cut(s) 28, 271, 359
SsiI CCGC 1 cut(s) 60
SspMI CTAG 2 cut(s) 291, 368
SstI GAGCTC 1 cut(s) 38
StyI CCWWGG 2 cut(s) 232, 290
TaaI ACNGT 1 cut(s) 299
TaiI ACGT 1 cut(s) 350
TaqI TCGA 4 cut(s) 32, 105, 111, 172
TaqII GACCGA 2 cut(s) 195, 403
TasI AATT 3 cut(s) 28, 271, 359
TspDTI ATGAA 4 cut(s) 66, 82, 206, 234
TspGWI ACGGA 1 cut(s) 330
VpaK11BI GGWCC 2 cut(s) 158, 364
XapI RAATTY 1 cut(s) 28
XmaJI CCTAGG 1 cut(s) 290
XspI CTAG 2 cut(s) 291, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.