Rroxscaffold_7G00176230

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0021493
Physical Location & Seq
Forward (+)
15707423 .. 15720058
12636 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00176230.1

Sequence Viewer

Length: 582 bp
ATGGGGGTTGTTTGGATCGATTCACGTGAAACTCCGATCAACTCGGTGGTAACATCACACAAATTTGCACATATTCTTCATACCCGTGATGCCACCAACAAGTTTTTGGCGCCGTTGCGGGGGATTGAGCTTATTCCTACGGGAAGAACTAAGTTGCTTGAATTTCTTACCTTGAAATTAAAGCATGATGTTGTTCTTGAATTCGAGCTCCGACTCTTCGGACTTGAGTTGCGGAAGTGGGTTTTCTTCATCGGAGTCGGACTTCATGTACGGGTTCGAGATCGAGGTCGTCGTCTTCGTGCTACGACATACCGAGGCCCAAACCCATCGGACCGGTGTCTTATCGACTTGACCCGAAACCCATCGGAAGCCGATGCAAGAAAACGAGTTCATGAAGACGAAACCCAAGGCGTTGAAGATTTACGGCGACTTGAAGAAGGTGAAGCAACCAATCTCGCTGGGTGGAAAACTCGCAGCTTCTCAATTCCATTTTCAATGGCCGAAATAGAAAGAACGGAAACCCGGCCTTGTAAACGGACCGGGATTGACTCTATGAGACCGGGTCAAAAAGCGAAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

22.24

Weight (kDa)

10.05

Isoelectric Point (pI)

42.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021493)

Species Orthologous Gene IDs
rosa_laevigata RLG00000004441
rosa_multiflora Rmu_sc0002161.1_g000030
rosa_roxburghii Rroxscaffold_157G00438460 Rroxscaffold_1G00053020 Rroxscaffold_7G00176230

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 109
AciI CCGC 2 cut(s) 118, 232
AclWI GGATC 1 cut(s) 23
AcoI YGGCCR 1 cut(s) 498
AcsI RAATTY 3 cut(s) 62, 161, 200
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 1 cut(s) 110
AfaI GTAC 1 cut(s) 270
AfiI CCNNNNNNNGG 1 cut(s) 119
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 6 cut(s) 161, 175, 200, 416, 434, 495
AluBI AGCT 3 cut(s) 130, 208, 477
AluI AGCT 3 cut(s) 130, 208, 477
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 550
AlwI GGATC 1 cut(s) 23
AoxI GGCC 3 cut(s) 316, 498, 524
ApeKI GCWGC 1 cut(s) 474
ApoI RAATTY 3 cut(s) 62, 161, 200
AsiGI ACCGGT 1 cut(s) 333
AspLEI GCGC 1 cut(s) 112
AspS9I GGNCC 3 cut(s) 317, 331, 537
AsuC2I CCSGG 3 cut(s) 523, 541, 561
AsuHPI GGTGA 1 cut(s) 452
AvaII GGWCC 2 cut(s) 331, 537
BanI GGYRCC 1 cut(s) 109
BanII GRGCYC 1 cut(s) 210
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 287, 402
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 1 cut(s) 486
BccI CCATC 2 cut(s) 334, 370
BceAI ACGGC 2 cut(s) 97, 440
BcnI CCSGG 3 cut(s) 523, 541, 561
BcoDI GTCTC 1 cut(s) 550
BfoI RGCGCY 1 cut(s) 113
BisI GCNGC 1 cut(s) 475
BlsI GCNGC 1 cut(s) 476
Bme1390I CCNGG 3 cut(s) 523, 541, 561
Bme18I GGWCC 2 cut(s) 331, 537
BmgT120I GGNCC 3 cut(s) 317, 331, 537
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 3 cut(s) 523, 541, 561
BmsI GCATC 2 cut(s) 79, 364
BoxI GACNNNNGTC 1 cut(s) 336
BpiI GAAGAC 2 cut(s) 287, 402
BpuEI CTTGAG 1 cut(s) 245
BpuMI CCSGG 3 cut(s) 523, 541, 561
Bsa29I ATCGAT 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 1 cut(s) 110
BsaI GGTCTC 1 cut(s) 550
BsaJI CCNNGG 2 cut(s) 313, 406
BsaWI WCCGGW 1 cut(s) 333
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 333
BseCI ATCGAT 1 cut(s) 18
BseDI CCNNGG 2 cut(s) 313, 406
BseLI CCNNNNNNNGG 1 cut(s) 119
BseXI GCAGC 1 cut(s) 486
BseYI CCCAGC 1 cut(s) 458
BshFI GGCC 3 cut(s) 318, 500, 526
BshNI GGYRCC 1 cut(s) 109
BshTI ACCGGT 1 cut(s) 333
BshVI ATCGAT 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 210
BsiSI CCGG 4 cut(s) 334, 523, 540, 560
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 1 cut(s) 550
BsnI GGCC 3 cut(s) 318, 500, 526
Bso31I GGTCTC 1 cut(s) 550
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 3 cut(s) 15, 36, 280
BspACI CCGC 2 cut(s) 118, 232
BspANI GGCC 3 cut(s) 318, 500, 526
BspDI ATCGAT 1 cut(s) 18
BspHI TCATGA 1 cut(s) 391
BspLI GGNNCC 1 cut(s) 111
BspPI GGATC 1 cut(s) 23
BspT107I GGYRCC 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 550
BsrFI RCCGGY 1 cut(s) 333
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 313, 406
BssMI GATC 3 cut(s) 15, 36, 280
BssNI GRCGYC 1 cut(s) 110
BssT1I CCWWGG 1 cut(s) 406
Bst6I CTCTTC 1 cut(s) 221
BstACI GRCGYC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 150
BstH2I RGCGCY 1 cut(s) 113
BstHHI GCGC 1 cut(s) 112
BstKTI GATC 3 cut(s) 18, 39, 283
BstMAI GTCTC 1 cut(s) 550
BstMBI GATC 3 cut(s) 15, 36, 280
BstPAI GACNNNNGTC 1 cut(s) 336
BstSCI CCNGG 3 cut(s) 521, 539, 559
BstV1I GCAGC 1 cut(s) 486
BstV2I GAAGAC 2 cut(s) 287, 402
Bsu15I ATCGAT 1 cut(s) 18
BsuRI GGCC 3 cut(s) 318, 500, 526
BsuTUI ATCGAT 1 cut(s) 18
CciI TCATGA 1 cut(s) 391
CfoI GCGC 1 cut(s) 112
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 317, 331, 537
ClaI ATCGAT 1 cut(s) 18
CpoI CGGWCCG 2 cut(s) 331, 537
Csp6I GTAC 1 cut(s) 269
CspAI ACCGGT 1 cut(s) 333
CspI CGGWCCG 2 cut(s) 331, 537
CviAII CATG 3 cut(s) 185, 266, 392
CviJI RGCY 7 cut(s) 130, 208, 318, 371, 477, 500, 526
CviKI_1 RGCY 7 cut(s) 130, 208, 318, 371, 477, 500, 526
CviQI GTAC 1 cut(s) 269
DdeI CTNAG 1 cut(s) 150
DinI GGCGCC 1 cut(s) 111
DpnI GATC 3 cut(s) 17, 38, 282
DpnII GATC 3 cut(s) 15, 36, 280
EaeI YGGCCR 1 cut(s) 498
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 406
Eco24I GRGCYC 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 550
Eco47I GGWCC 2 cut(s) 331, 537
Eco53kI GAGCTC 1 cut(s) 208
Eco72I CACGTG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 200
EcoT14I CCWWGG 1 cut(s) 406
EcoT38I GRGCYC 1 cut(s) 210
EgeI GGCGCC 1 cut(s) 111
EheI GGCGCC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 3 cut(s) 188, 269, 395
FaiI YATR 7 cut(s) 72, 81, 186, 267, 310, 393, 554
FatI CATG 3 cut(s) 184, 265, 391
FauI CCCGC 1 cut(s) 111
Fnu4HI GCNGC 1 cut(s) 475
FriOI GRGCYC 1 cut(s) 210
Fsp4HI GCNGC 1 cut(s) 475
GlaI GCGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 475
GsaI CCCAGC 1 cut(s) 462
HaeII RGCGCY 1 cut(s) 113
HaeIII GGCC 3 cut(s) 318, 500, 526
HapII CCGG 4 cut(s) 334, 523, 540, 560
HhaI GCGC 1 cut(s) 112
Hin1I GRCGYC 1 cut(s) 110
Hin1II CATG 3 cut(s) 188, 269, 395
Hin6I GCGC 1 cut(s) 110
HinP1I GCGC 1 cut(s) 110
HinfI GANTC 4 cut(s) 20, 213, 255, 548
HpaII CCGG 4 cut(s) 334, 523, 540, 560
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 7 cut(s) 36, 212, 221, 254, 260, 331, 367
Hpy188III TCNNGA 3 cut(s) 197, 278, 392
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 431
HpyCH4IV ACGT 1 cut(s) 25
HpyCH4V TGCA 2 cut(s) 68, 377
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 25
Hsp92I GRCGYC 1 cut(s) 110
Hsp92II CATG 3 cut(s) 188, 269, 395
HspAI GCGC 1 cut(s) 110
KasI GGCGCC 1 cut(s) 109
Kzo9I GATC 3 cut(s) 15, 36, 280
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 5 cut(s) 347, 444, 536, 553, 573
Lsp1109I GCAGC 1 cut(s) 486
LweI GCATC 2 cut(s) 79, 364
MaeII ACGT 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 49
MalI GATC 3 cut(s) 17, 38, 282
MboI GATC 3 cut(s) 15, 36, 280
MboII GAAGA 8 cut(s) 68, 156, 208, 238, 287, 407, 428, 446
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 5 cut(s) 62, 161, 176, 200, 483
Mly113I GGCGCC 1 cut(s) 110
MlyI GAGTC 3 cut(s) 207, 264, 542
MmeI TCCRAC 2 cut(s) 235, 238
MnlI CCTC 2 cut(s) 278, 308
MseI TTAA 1 cut(s) 179
MslI CAYNNNNRTG 1 cut(s) 84
MspI CCGG 4 cut(s) 334, 523, 540, 560
MspR9I CCNGG 3 cut(s) 523, 541, 561
NarI GGCGCC 1 cut(s) 110
NciI CCSGG 3 cut(s) 523, 541, 561
NdeII GATC 3 cut(s) 15, 36, 280
NlaIII CATG 3 cut(s) 188, 269, 395
NlaIV GGNNCC 1 cut(s) 111
PagI TCATGA 1 cut(s) 391
PcsI WCGNNNNNNNCGW 2 cut(s) 289, 295
PfeI GAWTC 1 cut(s) 20
PflFI GACNNNGTC 1 cut(s) 561
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 1 cut(s) 476
PleI GAGTC 3 cut(s) 207, 263, 542
PluTI GGCGCC 1 cut(s) 113
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 3 cut(s) 207, 263, 542
Ppu21I YACGTR 1 cut(s) 26
PshAI GACNNNNGTC 1 cut(s) 336
Psp124BI GAGCTC 1 cut(s) 210
PspCI CACGTG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 458
PspN4I GGNNCC 1 cut(s) 111
PspPI GGNCC 3 cut(s) 317, 331, 537
PsyI GACNNNGTC 1 cut(s) 561
RsaI GTAC 1 cut(s) 270
RsaNI GTAC 1 cut(s) 269
RseI CAYNNNNRTG 1 cut(s) 84
Rsr2I CGGWCCG 2 cut(s) 331, 537
RsrII CGGWCCG 2 cut(s) 331, 537
SacI GAGCTC 1 cut(s) 210
SaqAI TTAA 1 cut(s) 179
SatI GCNGC 1 cut(s) 475
Sau3AI GATC 3 cut(s) 15, 36, 280
Sau96I GGNCC 3 cut(s) 317, 331, 537
SchI GAGTC 3 cut(s) 207, 264, 542
ScrFI CCNGG 3 cut(s) 523, 541, 561
SduI GDGCHC 1 cut(s) 210
SetI ASST 7 cut(s) 28, 132, 173, 210, 289, 442, 479
SfaNI GCATC 2 cut(s) 79, 364
SfoI GGCGCC 1 cut(s) 111
SinI GGWCC 2 cut(s) 331, 537
SmiMI CAYNNNNRTG 1 cut(s) 84
SmlI CTYRAG 1 cut(s) 224
SmoI CTYRAG 1 cut(s) 224
Sse9I AATT 5 cut(s) 62, 161, 176, 200, 483
SsiI CCGC 2 cut(s) 118, 232
SspDI GGCGCC 1 cut(s) 109
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 521, 539, 559
StyI CCWWGG 1 cut(s) 406
TaiI ACGT 1 cut(s) 28
TaqI TCGA 5 cut(s) 18, 204, 277, 283, 345
TasI AATT 5 cut(s) 62, 161, 176, 200, 483
TfiI GAWTC 1 cut(s) 20
Tru1I TTAA 1 cut(s) 179
Tru9I TTAA 1 cut(s) 179
TseI GCWGC 1 cut(s) 474
TspDTI ATGAA 5 cut(s) 68, 238, 254, 380, 408
TspGWI ACGGA 2 cut(s) 530, 550
Tth111I GACNNNGTC 1 cut(s) 561
VpaK11BI GGWCC 2 cut(s) 331, 537
XapI RAATTY 3 cut(s) 62, 161, 200
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.