Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002161.1

Orthogroup ID

OG0021493

Physical Location & Seq

Genomic Coordinates Forward (+)

135547 .. 138460

Gene Structure 2914 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002161.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

atgggttccgattctcattaccagattccggccattgatttctcaatcaattctacggaactggatcgcggaactgataagtggtacaatttgtgcaagagggttagagaggcttgtgaaaattatggttgctttgaaatagttatcccactactcgatcccttctatgagagctttggtattgaagattcctccaactatgagtcctttaaaagcttcactgagttgatgtggccagatggtcatgagcagttttgtgttaaacagcgacaaaaggttcttgaattcgagctccagctcttcggacttgtgttgcagaaatgggttttcttcatcggagtcagacttcatgtacgggttcgagatcgaggtcgtcgtcttcgtgctacagcataccgaggcccaaacccatcggaccagtgtcttatcgacttgacccgaaacccatcagaagccgatgcaagaaaacaggttcatgaagacgaaacccaaggagttgaagatttacagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0001101 GO:0003006 GO:0003674 GO:0003824 GO:0006082 GO:0006629 GO:0006720 GO:0006721 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009755 GO:0009791 GO:0009826 GO:0009908 GO:0009987 GO:0010033 GO:0010476 GO:0010817 GO:0016043 GO:0016049 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016491 GO:0016705 GO:0016706 GO:0019752 GO:0022414 GO:0023052 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0042445 GO:0042446 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0045544 GO:0046394 GO:0048367 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051213 GO:0051716 GO:0055114 GO:0060560 GO:0061458 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071396 GO:0071495 GO:0071704 GO:0071840 GO:0090567 GO:1901576 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

170

Amino Acids

19.92

Weight (kDa)

5.14

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021493)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000004441
rosa_multiflora	Rmu_sc0002161.1_g000030
rosa_roxburghii	Rroxscaffold_157G00438460 Rroxscaffold_1G00053020 Rroxscaffold_7G00176230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	2 cut(s)	72, 152
AcoI	YGGCCR	2 cut(s)	30, 233
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	2 cut(s)	86, 354
AfiI	CCNNNNNNNGG	1 cut(s)	28
AgsI	TTSAA	4 cut(s)	137, 185, 284, 500
AluBI	AGCT	4 cut(s)	174, 216, 292, 298
AluI	AGCT	4 cut(s)	174, 216, 292, 298
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	2 cut(s)	72, 152
AoxI	GGCC	3 cut(s)	30, 233, 400
ApoI	RAATTY	1 cut(s)	284
AspS9I	GGNCC	2 cut(s)	401, 415
AvaII	GGWCC	1 cut(s)	415
BalI	TGGCCA	1 cut(s)	235
BanII	GRGCYC	1 cut(s)	294
BbsI	GAAGAC	2 cut(s)	371, 486
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	233, 418, 454
BfmI	CTRYAG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	415
BmgT120I	GGNCC	2 cut(s)	401, 415
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	1 cut(s)	448
BoxI	GACNNNNGTC	1 cut(s)	420
BpiI	GAAGAC	2 cut(s)	371, 486
BpmI	CTGGAG	1 cut(s)	278
BsaJI	CCNNGG	2 cut(s)	397, 490
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	2 cut(s)	66, 418
BseDI	CCNNGG	2 cut(s)	397, 490
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	2 cut(s)	66, 418
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	3 cut(s)	32, 235, 402
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	1 cut(s)	28
BsnI	GGCC	3 cut(s)	32, 235, 402
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	3 cut(s)	64, 157, 364
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	3 cut(s)	32, 235, 402
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	69
BspHI	TCATGA	2 cut(s)	244, 475
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	2 cut(s)	72, 152
BspQI	GCTCTTC	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	66, 418
BssECI	CCNNGG	2 cut(s)	397, 490
BssMI	GATC	3 cut(s)	64, 157, 364
BssT1I	CCWWGG	1 cut(s)	490
Bst4CI	ACNGT	1 cut(s)	510
Bst6I	CTCTTC	1 cut(s)	305
BstDEI	CTNAG	1 cut(s)	222
BstFNI	CGCG	1 cut(s)	69
BstKTI	GATC	3 cut(s)	67, 160, 367
BstMBI	GATC	3 cut(s)	64, 157, 364
BstPAI	GACNNNNGTC	1 cut(s)	420
BstSFI	CTRYAG	1 cut(s)	387
BstUI	CGCG	1 cut(s)	69
BstV2I	GAAGAC	2 cut(s)	371, 486
BsuRI	GGCC	3 cut(s)	32, 235, 402
BtsIMutI	CAGTG	2 cut(s)	219, 425
CciI	TCATGA	2 cut(s)	244, 475
Cfr13I	GGNCC	2 cut(s)	401, 415
Csp6I	GTAC	2 cut(s)	85, 353
CviAII	CATG	3 cut(s)	245, 350, 476
CviJI	RGCY	9 cut(s)	32, 113, 174, 216, 235, 292, 298, 402, 455
CviKI_1	RGCY	9 cut(s)	32, 113, 174, 216, 235, 292, 298, 402, 455
CviQI	GTAC	2 cut(s)	85, 353
DdeI	CTNAG	1 cut(s)	222
DpnI	GATC	3 cut(s)	66, 159, 366
DpnII	GATC	3 cut(s)	64, 157, 364
DraI	TTTAAA	1 cut(s)	211
EaeI	YGGCCR	2 cut(s)	30, 233
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	292
Eco130I	CCWWGG	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	294
Eco47I	GGWCC	1 cut(s)	415
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoRI	GAATTC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	490
EcoT38I	GRGCYC	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	490
FaeI	CATG	3 cut(s)	248, 353, 479
FaiI	YATR	7 cut(s)	126, 168, 201, 246, 351, 394, 477
FatI	CATG	3 cut(s)	244, 349, 475
FriOI	GRGCYC	1 cut(s)	294
GsuI	CTGGAG	1 cut(s)	278
HaeIII	GGCC	3 cut(s)	32, 235, 402
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	3 cut(s)	248, 353, 479
HindIII	AAGCTT	1 cut(s)	214
HinfI	GANTC	5 cut(s)	11, 25, 188, 203, 339
HpaII	CCGG	1 cut(s)	29
Hpy188I	TCNGA	6 cut(s)	10, 305, 338, 344, 415, 451
Hpy188III	TCNNGA	4 cut(s)	245, 281, 362, 476
Hpy99I	CGWCG	1 cut(s)	378
HpyAV	CCTTC	1 cut(s)	172
HpyCH4III	ACNGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	96, 316, 461
HpyF3I	CTNAG	1 cut(s)	222
Hsp92II	CATG	3 cut(s)	248, 353, 479
Kzo9I	GATC	3 cut(s)	64, 157, 364
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	1 cut(s)	297
LpnPI	CCDG	7 cut(s)	35, 42, 47, 249, 308, 431, 455
LweI	GCATC	1 cut(s)	448
MalI	GATC	3 cut(s)	66, 159, 366
MboI	GATC	3 cut(s)	64, 157, 364
MboII	GAAGA	6 cut(s)	197, 292, 322, 371, 491, 512
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	235
MluCI	AATT	4 cut(s)	49, 88, 121, 284
MluNI	TGGCCA	1 cut(s)	235
MlyI	GAGTC	2 cut(s)	212, 348
MmeI	TCCRAC	1 cut(s)	219
MnlI	CCTC	5 cut(s)	93, 103, 202, 362, 392
Mox20I	TGGCCA	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	235
MseI	TTAA	2 cut(s)	210, 261
Msp20I	TGGCCA	1 cut(s)	235
MspI	CCGG	1 cut(s)	29
MvnI	CGCG	1 cut(s)	69
NdeII	GATC	3 cut(s)	64, 157, 364
NlaIII	CATG	3 cut(s)	248, 353, 479
NlaIV	GGNNCC	1 cut(s)	7
PagI	TCATGA	2 cut(s)	244, 475
PciSI	GCTCTTC	1 cut(s)	305
PcsI	WCGNNNNNNNCGW	2 cut(s)	373, 379
PfeI	GAWTC	3 cut(s)	11, 25, 188
PleI	GAGTC	2 cut(s)	211, 347
PpsI	GAGTC	2 cut(s)	211, 347
PshAI	GACNNNNGTC	1 cut(s)	420
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	401, 415
RsaI	GTAC	2 cut(s)	86, 354
RsaNI	GTAC	2 cut(s)	85, 353
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	305
SaqAI	TTAA	2 cut(s)	210, 261
Sau3AI	GATC	3 cut(s)	64, 157, 364
Sau96I	GGNCC	2 cut(s)	401, 415
SchI	GAGTC	2 cut(s)	212, 348
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	7 cut(s)	176, 218, 279, 294, 300, 373, 474
SfaNI	GCATC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	387
SinI	GGWCC	1 cut(s)	415
Sse9I	AATT	4 cut(s)	49, 88, 121, 284
SsiI	CCGC	1 cut(s)	69
SstI	GAGCTC	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	510
TaqI	TCGA	5 cut(s)	156, 288, 361, 367, 429
TasI	AATT	4 cut(s)	49, 88, 121, 284
TfiI	GAWTC	3 cut(s)	11, 25, 188
Tru1I	TTAA	2 cut(s)	210, 261
Tru9I	TTAA	2 cut(s)	210, 261
TscAI	CASTG	2 cut(s)	226, 425
TspDTI	ATGAA	4 cut(s)	322, 338, 464, 492
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	2 cut(s)	226, 425
VpaK11BI	GGWCC	1 cut(s)	415
XapI	RAATTY	1 cut(s)	284

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.