Kinetochore protein NDC80 homolog
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000007377 RLG00000024706 |
| rosa_multiflora | Rmu_sc0000498.1_g000015 Rmu_ssc0000152.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00337790 |
| rosa_samantha | Rh2AG294900 Rh2DG319000 Rh4CG046500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 242 |
| AclWI | GGATC | 1 cut(s) | 17 |
| AgsI | TTSAA | 2 cut(s) | 73, 208 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| Alw26I | GTCTC | 1 cut(s) | 133 |
| AlwI | GGATC | 1 cut(s) | 17 |
| AoxI | GGCC | 2 cut(s) | 105, 252 |
| ApeKI | GCWGC | 3 cut(s) | 122, 217, 220 |
| BbvI | GCAGC | 3 cut(s) | 134, 229, 232 |
| BccI | CCATC | 3 cut(s) | 167, 182, 186 |
| BceAI | ACGGC | 1 cut(s) | 253 |
| BcoDI | GTCTC | 1 cut(s) | 133 |
| BfaI | CTAG | 1 cut(s) | 308 |
| BfmI | CTRYAG | 1 cut(s) | 215 |
| BglII | AGATCT | 2 cut(s) | 19, 167 |
| BisI | GCNGC | 3 cut(s) | 123, 218, 221 |
| BlsI | GCNGC | 3 cut(s) | 124, 219, 222 |
| BmsI | GCATC | 1 cut(s) | 109 |
| BpuEI | CTTGAG | 2 cut(s) | 77, 277 |
| BseGI | GGATG | 3 cut(s) | 124, 197, 322 |
| BseMII | CTCAG | 1 cut(s) | 222 |
| BseXI | GCAGC | 3 cut(s) | 134, 229, 232 |
| BsgI | GTGCAG | 1 cut(s) | 392 |
| BshFI | GGCC | 2 cut(s) | 107, 254 |
| BsmAI | GTCTC | 1 cut(s) | 133 |
| BsnI | GGCC | 2 cut(s) | 107, 254 |
| Bsp143I | GATC | 3 cut(s) | 9, 19, 167 |
| BspACI | CCGC | 1 cut(s) | 242 |
| BspANI | GGCC | 2 cut(s) | 107, 254 |
| BspCNI | CTCAG | 1 cut(s) | 223 |
| BspMAI | CTGCAG | 1 cut(s) | 219 |
| BspPI | GGATC | 1 cut(s) | 17 |
| BssMI | GATC | 3 cut(s) | 9, 19, 167 |
| Bst4CI | ACNGT | 1 cut(s) | 16 |
| Bst6I | CTCTTC | 4 cut(s) | 293, 306, 413, 421 |
| BstC8I | GCNNGC | 1 cut(s) | 225 |
| BstDEI | CTNAG | 1 cut(s) | 231 |
| BstF5I | GGATG | 3 cut(s) | 124, 197, 322 |
| BstKTI | GATC | 3 cut(s) | 12, 22, 170 |
| BstMAI | GTCTC | 1 cut(s) | 133 |
| BstMBI | GATC | 3 cut(s) | 9, 19, 167 |
| BstNSI | RCATGY | 1 cut(s) | 227 |
| BstSFI | CTRYAG | 1 cut(s) | 215 |
| BstV1I | GCAGC | 3 cut(s) | 134, 229, 232 |
| BstX2I | RGATCY | 2 cut(s) | 19, 167 |
| BstYI | RGATCY | 2 cut(s) | 19, 167 |
| BsuRI | GGCC | 2 cut(s) | 107, 254 |
| BtsCI | GGATG | 3 cut(s) | 124, 197, 322 |
| Cac8I | GCNNGC | 1 cut(s) | 225 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 216, 251 |
| CviAII | CATG | 3 cut(s) | 136, 224, 332 |
| CviJI | RGCY | 5 cut(s) | 91, 107, 177, 254, 268 |
| CviKI_1 | RGCY | 5 cut(s) | 91, 107, 177, 254, 268 |
| DdeI | CTNAG | 1 cut(s) | 231 |
| DpnI | GATC | 3 cut(s) | 11, 21, 169 |
| DpnII | GATC | 3 cut(s) | 9, 19, 167 |
| Eam1104I | CTCTTC | 4 cut(s) | 293, 306, 413, 421 |
| EarI | CTCTTC | 4 cut(s) | 293, 306, 413, 421 |
| EciI | GGCGGA | 1 cut(s) | 257 |
| Eco147I | AGGCCT | 1 cut(s) | 254 |
| FaeI | CATG | 3 cut(s) | 139, 227, 335 |
| FaiI | YATR | 6 cut(s) | 51, 137, 225, 279, 305, 333 |
| FatI | CATG | 3 cut(s) | 135, 223, 331 |
| Fnu4HI | GCNGC | 3 cut(s) | 123, 218, 221 |
| FokI | GGATG | 3 cut(s) | 131, 204, 329 |
| Fsp4HI | GCNGC | 3 cut(s) | 123, 218, 221 |
| FspBI | CTAG | 1 cut(s) | 308 |
| GluI | GCNGC | 3 cut(s) | 123, 218, 221 |
| HaeIII | GGCC | 2 cut(s) | 107, 254 |
| Hin1II | CATG | 3 cut(s) | 139, 227, 335 |
| HinfI | GANTC | 1 cut(s) | 346 |
| Hpy188I | TCNGA | 2 cut(s) | 172, 187 |
| Hpy188III | TCNNGA | 3 cut(s) | 94, 350, 411 |
| Hpy99I | CGWCG | 2 cut(s) | 150, 274 |
| HpyAV | CCTTC | 2 cut(s) | 118, 390 |
| HpyCH4III | ACNGT | 1 cut(s) | 16 |
| HpyCH4V | TGCA | 4 cut(s) | 122, 217, 227, 373 |
| HpyF3I | CTNAG | 1 cut(s) | 231 |
| Hsp92II | CATG | 3 cut(s) | 139, 227, 335 |
| Kzo9I | GATC | 3 cut(s) | 9, 19, 167 |
| LpnPI | CCDG | 2 cut(s) | 8, 424 |
| Lsp1109I | GCAGC | 3 cut(s) | 134, 229, 232 |
| LweI | GCATC | 1 cut(s) | 109 |
| MaeI | CTAG | 1 cut(s) | 308 |
| MalI | GATC | 3 cut(s) | 11, 21, 169 |
| MboI | GATC | 3 cut(s) | 9, 19, 167 |
| MboII | GAAGA | 8 cut(s) | 168, 177, 310, 323, 376, 430, 435, 438 |
| MfeI | CAATTG | 1 cut(s) | 203 |
| MflI | RGATCY | 2 cut(s) | 19, 167 |
| MluCI | AATT | 3 cut(s) | 35, 82, 203 |
| MseI | TTAA | 1 cut(s) | 38 |
| MunI | CAATTG | 1 cut(s) | 203 |
| NdeII | GATC | 3 cut(s) | 9, 19, 167 |
| NlaIII | CATG | 3 cut(s) | 139, 227, 335 |
| NspI | RCATGY | 1 cut(s) | 227 |
| PaeI | GCATGC | 1 cut(s) | 227 |
| PceI | AGGCCT | 1 cut(s) | 254 |
| PfeI | GAWTC | 1 cut(s) | 346 |
| PkrI | GCNGC | 3 cut(s) | 124, 219, 222 |
| PstI | CTGCAG | 1 cut(s) | 219 |
| PsuI | RGATCY | 2 cut(s) | 19, 167 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| SatI | GCNGC | 3 cut(s) | 123, 218, 221 |
| Sau3AI | GATC | 3 cut(s) | 9, 19, 167 |
| SetI | ASST | 3 cut(s) | 237, 263, 410 |
| SfaNI | GCATC | 1 cut(s) | 109 |
| SfcI | CTRYAG | 1 cut(s) | 215 |
| SmlI | CTYRAG | 2 cut(s) | 92, 256 |
| SmoI | CTYRAG | 2 cut(s) | 92, 256 |
| SphI | GCATGC | 1 cut(s) | 227 |
| Sse9I | AATT | 3 cut(s) | 35, 82, 203 |
| SseBI | AGGCCT | 1 cut(s) | 254 |
| SsiI | CCGC | 1 cut(s) | 242 |
| SspMI | CTAG | 1 cut(s) | 308 |
| StuI | AGGCCT | 1 cut(s) | 254 |
| TaaI | ACNGT | 1 cut(s) | 16 |
| TaqI | TCGA | 2 cut(s) | 263, 351 |
| TasI | AATT | 3 cut(s) | 35, 82, 203 |
| TfiI | GAWTC | 1 cut(s) | 346 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TseI | GCWGC | 3 cut(s) | 122, 217, 220 |
| XceI | RCATGY | 1 cut(s) | 227 |
| XspI | CTAG | 1 cut(s) | 308 |