Rh2DG319000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0019463
Physical Location & Seq
Reverse (-)
39635219 .. 39668631
33413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG319000.1

Sequence Viewer

Length: 468 bp
ATGATATTCATAAGAGCTGTCTGCTCAGAGAGAAACATTCACTGTGGAAGCTGCGATGTTGTTGTTGCTTTGAATAGGCTTACTCTAAAGATGATGGCCAAAGGCCTGGAGCACCTGGTCAGGGACTTCGACCTGCTGGAACTGATCGCTATTGATCTGATTGATGGCGAGTATAGGAGGAAAGATTGTTGGGGTTTTAGAAAGCACGTGAATAAGGTTGATGCTGCAGAGATGATGGAGATGTGCGCGCATCTGGTTAGTATTACCCTGAAAGGGATGGGGGACGAACCAGAGGAGCAATTGAAGGTCTGCAGTAGCATGCAACCGAGCTGGAGGCGGAAGTGGAGGCCTTCAGGTCGAAGCCGTCACCTTAGGAGGCATTGGATAGGGAGGAGTATGCTAGAAGAGGATGTGAGCAAGTTTCATGAGATGATTGAGAATCTCGACAAGAATGTGAAGAAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

18.17

Weight (kDa)

8.78

Isoelectric Point (pI)

54.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019463)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007377 RLG00000024706
rosa_multiflora Rmu_sc0000498.1_g000015 Rmu_ssc0000152.1_g000004
rosa_roxburghii Rroxscaffold_5G00337790
rosa_samantha Rh2AG294900 Rh2DG319000 Rh4CG046500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 141
AccII CGCG 1 cut(s) 248
AciI CCGC 1 cut(s) 337
AcoI YGGCCR 1 cut(s) 96
AcuI CTGAAG 1 cut(s) 336
AcvI CACGTG 1 cut(s) 208
AfiI CCNNNNNNNGG 2 cut(s) 121, 273
AgsI TTSAA 2 cut(s) 73, 304
AjnI CCWGG 2 cut(s) 105, 114
AluBI AGCT 3 cut(s) 17, 51, 330
AluI AGCT 3 cut(s) 17, 51, 330
Alw21I GWGCWC 1 cut(s) 114
AoxI GGCC 3 cut(s) 96, 103, 347
ApeKI GCWGC 2 cut(s) 51, 224
AspLEI GCGC 2 cut(s) 248, 250
AsuHPI GGTGA 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 371
BalI TGGCCA 1 cut(s) 98
BbrPI CACGTG 1 cut(s) 208
Bbv12I GWGCWC 1 cut(s) 114
BbvI GCAGC 2 cut(s) 38, 211
BccI CCATC 4 cut(s) 88, 158, 229, 271
BceAI ACGGC 1 cut(s) 348
BciT130I CCWGG 2 cut(s) 107, 116
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 2 cut(s) 225, 310
BfuAI ACCTGC 1 cut(s) 141
BisI GCNGC 2 cut(s) 52, 225
BlsI GCNGC 2 cut(s) 53, 226
Bme1390I CCNGG 2 cut(s) 107, 116
BmrFI CCNGG 2 cut(s) 107, 116
BmsI GCATC 2 cut(s) 211, 259
BpmI CTGGAG 2 cut(s) 128, 352
BsaAI YACGTR 1 cut(s) 208
Bsc4I CCNNNNNNNGG 2 cut(s) 121, 273
Bse21I CCTNAGG 1 cut(s) 371
BseBI CCWGG 2 cut(s) 107, 116
BseGI GGATG 2 cut(s) 282, 415
BseLI CCNNNNNNNGG 2 cut(s) 121, 273
BseMII CTCAG 1 cut(s) 39
BsePI GCGCGC 1 cut(s) 246
BseRI GAGGAG 2 cut(s) 308, 406
BseXI GCAGC 2 cut(s) 38, 211
Bsh1236I CGCG 1 cut(s) 248
BshFI GGCC 3 cut(s) 98, 105, 349
BsiHKAI GWGCWC 1 cut(s) 114
BslFI GGGAC 2 cut(s) 137, 296
BslI CCNNNNNNNGG 2 cut(s) 121, 273
BsmFI GGGAC 2 cut(s) 137, 296
BsnI GGCC 3 cut(s) 98, 105, 349
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 2 cut(s) 144, 154
BspACI CCGC 1 cut(s) 337
BspANI GGCC 3 cut(s) 98, 105, 349
BspCNI CTCAG 1 cut(s) 38
BspFNI CGCG 1 cut(s) 248
BspHI TCATGA 1 cut(s) 424
BspMAI CTGCAG 2 cut(s) 229, 314
BspMI ACCTGC 1 cut(s) 141
BssHII GCGCGC 1 cut(s) 246
BssMI GATC 2 cut(s) 144, 154
Bst2UI CCWGG 2 cut(s) 107, 116
Bst4CI ACNGT 1 cut(s) 44
Bst6I CTCTTC 1 cut(s) 399
BstBAI YACGTR 1 cut(s) 208
BstC8I GCNNGC 2 cut(s) 248, 320
BstDEI CTNAG 2 cut(s) 25, 371
BstF5I GGATG 2 cut(s) 282, 415
BstFNI CGCG 1 cut(s) 248
BstHHI GCGC 2 cut(s) 248, 250
BstKTI GATC 2 cut(s) 147, 157
BstMBI GATC 2 cut(s) 144, 154
BstNI CCWGG 2 cut(s) 107, 116
BstNSI RCATGY 1 cut(s) 322
BstSCI CCNGG 2 cut(s) 105, 114
BstSFI CTRYAG 2 cut(s) 225, 310
BstUI CGCG 1 cut(s) 248
BstV1I GCAGC 2 cut(s) 38, 211
BstXI CCANNNNNNTGG 1 cut(s) 106
Bsu36I CCTNAGG 1 cut(s) 371
BsuRI GGCC 3 cut(s) 98, 105, 349
BtgZI GCGATG 1 cut(s) 69
BtsCI GGATG 2 cut(s) 282, 415
BtsIMutI CAGTG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 141
Cac8I GCNNGC 2 cut(s) 248, 320
CciI TCATGA 1 cut(s) 424
CfoI GCGC 2 cut(s) 248, 250
CsiI ACCWGGT 1 cut(s) 114
CviAII CATG 2 cut(s) 319, 425
CviJI RGCY 8 cut(s) 17, 51, 79, 98, 105, 330, 349, 363
CviKI_1 RGCY 8 cut(s) 17, 51, 79, 98, 105, 330, 349, 363
DdeI CTNAG 2 cut(s) 25, 371
DpnI GATC 2 cut(s) 146, 156
DpnII GATC 2 cut(s) 144, 154
EaeI YGGCCR 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
EciI GGCGGA 1 cut(s) 352
Eco147I AGGCCT 2 cut(s) 105, 349
Eco57I CTGAAG 1 cut(s) 336
Eco72I CACGTG 1 cut(s) 208
Eco81I CCTNAGG 1 cut(s) 371
EcoRII CCWGG 2 cut(s) 105, 114
FaeI CATG 2 cut(s) 322, 428
FaiI YATR 5 cut(s) 11, 174, 320, 398, 426
FaqI GGGAC 2 cut(s) 137, 296
FatI CATG 2 cut(s) 318, 424
Fnu4HI GCNGC 2 cut(s) 52, 225
FokI GGATG 2 cut(s) 289, 422
Fsp4HI GCNGC 2 cut(s) 52, 225
FspBI CTAG 1 cut(s) 401
GlaI GCGC 2 cut(s) 247, 249
GluI GCNGC 2 cut(s) 52, 225
GsuI CTGGAG 2 cut(s) 128, 352
HaeIII GGCC 3 cut(s) 98, 105, 349
HhaI GCGC 2 cut(s) 248, 250
Hin1II CATG 2 cut(s) 322, 428
Hin6I GCGC 2 cut(s) 246, 248
HinP1I GCGC 2 cut(s) 246, 248
HinfI GANTC 1 cut(s) 439
HphI GGTGA 1 cut(s) 359
Hpy188I TCNGA 2 cut(s) 28, 159
Hpy188III TCNNGA 2 cut(s) 425, 443
HpyAV CCTTC 2 cut(s) 298, 360
HpyCH4III ACNGT 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 3 cut(s) 227, 312, 322
HpyF3I CTNAG 2 cut(s) 25, 371
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 322, 428
HspAI GCGC 2 cut(s) 246, 248
Kzo9I GATC 2 cut(s) 144, 154
LmnI GCTCC 2 cut(s) 109, 295
Lsp1109I GCAGC 2 cut(s) 38, 211
LweI GCATC 2 cut(s) 211, 259
MabI ACCWGGT 1 cut(s) 114
MaeI CTAG 1 cut(s) 401
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 365
MalI GATC 2 cut(s) 146, 156
MboI GATC 2 cut(s) 144, 154
MboII GAAGA 1 cut(s) 416
MfeI CAATTG 1 cut(s) 299
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 1 cut(s) 98
MluCI AATT 1 cut(s) 299
MluNI TGGCCA 1 cut(s) 98
MnlI CCTC 7 cut(s) 171, 286, 327, 339, 369, 384, 400
Mox20I TGGCCA 1 cut(s) 98
MscI TGGCCA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 98
MspR9I CCNGG 2 cut(s) 107, 116
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 2 cut(s) 107, 116
MvnI CGCG 1 cut(s) 248
NdeII GATC 2 cut(s) 144, 154
NlaIII CATG 2 cut(s) 322, 428
NmuCI GTSAC 1 cut(s) 365
NspI RCATGY 1 cut(s) 322
PaeI GCATGC 1 cut(s) 322
PagI TCATGA 1 cut(s) 424
PauI GCGCGC 1 cut(s) 246
PceI AGGCCT 2 cut(s) 105, 349
PfeI GAWTC 1 cut(s) 439
PkrI GCNGC 2 cut(s) 53, 226
PmaCI CACGTG 1 cut(s) 208
PmlI CACGTG 1 cut(s) 208
Ppu21I YACGTR 1 cut(s) 208
Psp6I CCWGG 2 cut(s) 105, 114
PspCI CACGTG 1 cut(s) 208
PspGI CCWGG 2 cut(s) 105, 114
PstI CTGCAG 2 cut(s) 229, 314
PteI GCGCGC 1 cut(s) 246
SatI GCNGC 2 cut(s) 52, 225
Sau3AI GATC 2 cut(s) 144, 154
ScrFI CCNGG 2 cut(s) 107, 116
SduI GDGCHC 1 cut(s) 114
SexAI ACCWGGT 1 cut(s) 114
SfaNI GCATC 2 cut(s) 211, 259
SfcI CTRYAG 2 cut(s) 225, 310
SphI GCATGC 1 cut(s) 322
Sse9I AATT 1 cut(s) 299
SseBI AGGCCT 2 cut(s) 105, 349
SsiI CCGC 1 cut(s) 337
SspMI CTAG 1 cut(s) 401
StuI AGGCCT 2 cut(s) 105, 349
StyD4I CCNGG 2 cut(s) 105, 114
TaaI ACNGT 1 cut(s) 44
TaiI ACGT 1 cut(s) 210
TaqI TCGA 3 cut(s) 129, 358, 444
TasI AATT 1 cut(s) 299
TfiI GAWTC 1 cut(s) 439
TscAI CASTG 1 cut(s) 47
TseFI GTSAC 1 cut(s) 365
TseI GCWGC 2 cut(s) 51, 224
Tsp45I GTSAC 1 cut(s) 365
TspDTI ATGAA 1 cut(s) 413
TspRI CASTG 1 cut(s) 47
XceI RCATGY 1 cut(s) 322
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.