Rh2AG294900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0019463
Physical Location & Seq
Reverse (-)
36375174 .. 36375768
595 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG294900.1

Sequence Viewer

Length: 300 bp
ATGATCATCAGGAAAGATTGTTGGGGTTTTAGAAAGCACGTGAATAAGGTTGATGCTGCAGAGATGATGGAGATGTGCGCGCATCTGGTTAGTATTACCCTGAAAGGGATGGGGGACGAACCAGAGGAGCAATTGAAGGTCTGCAGTAGCATGCAACCGAGCTGGAGGCGGAAGTGGAGGCCTTCAGGTCGAAGCCGTCACCTTAGGAGGCATTGGATAGGGAGGAGTATGCTAGAAGAGGATGTGAGCAAGTTTCATGAGATGATTGAGAATCTCGACAAGAATGTGAAGAAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.81

Weight (kDa)

9.55

Isoelectric Point (pI)

60.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019463)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007377 RLG00000024706
rosa_multiflora Rmu_sc0000498.1_g000015 Rmu_ssc0000152.1_g000004
rosa_roxburghii Rroxscaffold_5G00337790
rosa_samantha Rh2AG294900 Rh2DG319000 Rh4CG046500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 80
AciI CCGC 1 cut(s) 169
AcuI CTGAAG 1 cut(s) 168
AcvI CACGTG 1 cut(s) 40
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 1 cut(s) 136
AluBI AGCT 1 cut(s) 162
AluI AGCT 1 cut(s) 162
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 56
AspLEI GCGC 2 cut(s) 80, 82
AsuHPI GGTGA 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 40
BbvI GCAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 61, 103
BceAI ACGGC 1 cut(s) 180
BclI TGATCA 1 cut(s) 3
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 2 cut(s) 57, 142
BisI GCNGC 1 cut(s) 57
BlsI GCNGC 1 cut(s) 58
BmsI GCATC 2 cut(s) 43, 91
BpmI CTGGAG 1 cut(s) 184
BsaAI YACGTR 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 105
Bse21I CCTNAGG 1 cut(s) 203
BseGI GGATG 2 cut(s) 114, 247
BseLI CCNNNNNNNGG 1 cut(s) 105
BsePI GCGCGC 1 cut(s) 78
BseRI GAGGAG 2 cut(s) 140, 238
BseXI GCAGC 1 cut(s) 43
Bsh1236I CGCG 1 cut(s) 80
BshFI GGCC 1 cut(s) 181
BslFI GGGAC 1 cut(s) 128
BslI CCNNNNNNNGG 1 cut(s) 105
BsmFI GGGAC 1 cut(s) 128
BsnI GGCC 1 cut(s) 181
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 1 cut(s) 169
BspANI GGCC 1 cut(s) 181
BspFNI CGCG 1 cut(s) 80
BspHI TCATGA 1 cut(s) 256
BspMAI CTGCAG 2 cut(s) 61, 146
BssHII GCGCGC 1 cut(s) 78
BssMI GATC 1 cut(s) 3
Bst6I CTCTTC 1 cut(s) 231
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 2 cut(s) 80, 152
BstDEI CTNAG 1 cut(s) 203
BstF5I GGATG 2 cut(s) 114, 247
BstFNI CGCG 1 cut(s) 80
BstHHI GCGC 2 cut(s) 80, 82
BstKTI GATC 1 cut(s) 6
BstMBI GATC 1 cut(s) 3
BstNSI RCATGY 1 cut(s) 154
BstSFI CTRYAG 2 cut(s) 57, 142
BstUI CGCG 1 cut(s) 80
BstV1I GCAGC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 203
BsuRI GGCC 1 cut(s) 181
BtsCI GGATG 2 cut(s) 114, 247
Cac8I GCNNGC 2 cut(s) 80, 152
CciI TCATGA 1 cut(s) 256
CfoI GCGC 2 cut(s) 80, 82
CviAII CATG 2 cut(s) 151, 257
CviJI RGCY 3 cut(s) 162, 181, 195
CviKI_1 RGCY 3 cut(s) 162, 181, 195
DdeI CTNAG 1 cut(s) 203
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 231
EarI CTCTTC 1 cut(s) 231
EciI GGCGGA 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 168
Eco72I CACGTG 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 203
FaeI CATG 2 cut(s) 154, 260
FaiI YATR 3 cut(s) 152, 230, 258
FaqI GGGAC 1 cut(s) 128
FatI CATG 2 cut(s) 150, 256
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 57
FokI GGATG 2 cut(s) 121, 254
Fsp4HI GCNGC 1 cut(s) 57
FspBI CTAG 1 cut(s) 233
GlaI GCGC 2 cut(s) 79, 81
GluI GCNGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 184
HaeIII GGCC 1 cut(s) 181
HhaI GCGC 2 cut(s) 80, 82
Hin1II CATG 2 cut(s) 154, 260
Hin6I GCGC 2 cut(s) 78, 80
HinP1I GCGC 2 cut(s) 78, 80
HinfI GANTC 1 cut(s) 271
HphI GGTGA 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 10, 257, 275
HpyAV CCTTC 2 cut(s) 130, 192
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 3 cut(s) 59, 144, 154
HpyF3I CTNAG 1 cut(s) 203
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 2 cut(s) 154, 260
HspAI GCGC 2 cut(s) 78, 80
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LmnI GCTCC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 71, 113, 135, 148, 171
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 2 cut(s) 43, 91
MaeI CTAG 1 cut(s) 233
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 197
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 248
MfeI CAATTG 1 cut(s) 131
MluCI AATT 1 cut(s) 131
MnlI CCTC 6 cut(s) 118, 159, 171, 201, 216, 232
MunI CAATTG 1 cut(s) 131
MvnI CGCG 1 cut(s) 80
NdeII GATC 1 cut(s) 3
NlaIII CATG 2 cut(s) 154, 260
NmuCI GTSAC 1 cut(s) 197
NspI RCATGY 1 cut(s) 154
PaeI GCATGC 1 cut(s) 154
PagI TCATGA 1 cut(s) 256
PauI GCGCGC 1 cut(s) 78
PceI AGGCCT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 271
PkrI GCNGC 1 cut(s) 58
PmaCI CACGTG 1 cut(s) 40
PmlI CACGTG 1 cut(s) 40
Ppu21I YACGTR 1 cut(s) 40
PspCI CACGTG 1 cut(s) 40
PstI CTGCAG 2 cut(s) 61, 146
PteI GCGCGC 1 cut(s) 78
SatI GCNGC 1 cut(s) 57
Sau3AI GATC 1 cut(s) 3
SetI ASST 6 cut(s) 42, 51, 141, 164, 190, 204
SfaNI GCATC 2 cut(s) 43, 91
SfcI CTRYAG 2 cut(s) 57, 142
SphI GCATGC 1 cut(s) 154
Sse9I AATT 1 cut(s) 131
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 1 cut(s) 169
SspMI CTAG 1 cut(s) 233
StuI AGGCCT 1 cut(s) 181
TaiI ACGT 1 cut(s) 42
TaqI TCGA 2 cut(s) 190, 276
TasI AATT 1 cut(s) 131
TfiI GAWTC 1 cut(s) 271
TseFI GTSAC 1 cut(s) 197
TseI GCWGC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 197
TspDTI ATGAA 1 cut(s) 245
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.