Kinetochore protein NDC80 homolog
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000007377 RLG00000024706 |
| rosa_multiflora | Rmu_sc0000498.1_g000015 Rmu_ssc0000152.1_g000004 |
| rosa_roxburghii | Rroxscaffold_5G00337790 |
| rosa_samantha | Rh2AG294900 Rh2DG319000 Rh4CG046500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 98 |
| AciI | CCGC | 3 cut(s) | 98, 101, 113 |
| AcsI | RAATTY | 1 cut(s) | 18 |
| AflII | CTTAAG | 1 cut(s) | 146 |
| AgsI | TTSAA | 3 cut(s) | 79, 328, 341 |
| AluBI | AGCT | 1 cut(s) | 106 |
| AluI | AGCT | 1 cut(s) | 106 |
| AoxI | GGCC | 1 cut(s) | 279 |
| ApeKI | GCWGC | 2 cut(s) | 88, 91 |
| ApoI | RAATTY | 1 cut(s) | 18 |
| BbvI | GCAGC | 2 cut(s) | 100, 103 |
| BceAI | ACGGC | 1 cut(s) | 124 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 114, 148 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BfmI | CTRYAG | 1 cut(s) | 86 |
| BfrI | CTTAAG | 1 cut(s) | 146 |
| BisI | GCNGC | 3 cut(s) | 89, 92, 99 |
| BlsI | GCNGC | 3 cut(s) | 90, 93, 100 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BpmI | CTGGAG | 1 cut(s) | 128 |
| BsaJI | CCNNGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 1 cut(s) | 47 |
| BseGI | GGATG | 3 cut(s) | 187, 193, 370 |
| BseRI | GAGGAG | 2 cut(s) | 83, 335 |
| BseXI | GCAGC | 2 cut(s) | 100, 103 |
| Bsh1236I | CGCG | 1 cut(s) | 98 |
| BshFI | GGCC | 1 cut(s) | 281 |
| BslFI | GGGAC | 1 cut(s) | 71 |
| BsmFI | GGGAC | 1 cut(s) | 71 |
| BsnI | GGCC | 1 cut(s) | 281 |
| Bsp143I | GATC | 2 cut(s) | 3, 12 |
| BspACI | CCGC | 3 cut(s) | 98, 101, 113 |
| BspANI | GGCC | 1 cut(s) | 281 |
| BspFNI | CGCG | 1 cut(s) | 98 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspMAI | CTGCAG | 1 cut(s) | 90 |
| BspTI | CTTAAG | 1 cut(s) | 146 |
| BssECI | CCNNGG | 1 cut(s) | 47 |
| BssMI | GATC | 2 cut(s) | 3, 12 |
| Bst6I | CTCTTC | 5 cut(s) | 164, 285, 293, 326, 374 |
| BstAFI | CTTAAG | 1 cut(s) | 146 |
| BstC8I | GCNNGC | 1 cut(s) | 96 |
| BstDSI | CCRYGG | 1 cut(s) | 47 |
| BstF5I | GGATG | 3 cut(s) | 187, 193, 370 |
| BstFNI | CGCG | 1 cut(s) | 98 |
| BstKTI | GATC | 2 cut(s) | 6, 15 |
| BstMBI | GATC | 2 cut(s) | 3, 12 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 278 |
| BstSFI | CTRYAG | 1 cut(s) | 86 |
| BstUI | CGCG | 1 cut(s) | 98 |
| BstV1I | GCAGC | 2 cut(s) | 100, 103 |
| BsuRI | GGCC | 1 cut(s) | 281 |
| BtgI | CCRYGG | 1 cut(s) | 47 |
| BtsCI | GGATG | 3 cut(s) | 187, 193, 370 |
| Cac8I | GCNNGC | 1 cut(s) | 96 |
| CviJI | RGCY | 5 cut(s) | 106, 139, 251, 272, 281 |
| CviKI_1 | RGCY | 5 cut(s) | 106, 139, 251, 272, 281 |
| DpnI | GATC | 2 cut(s) | 5, 14 |
| DpnII | GATC | 2 cut(s) | 3, 12 |
| Eam1104I | CTCTTC | 5 cut(s) | 164, 285, 293, 326, 374 |
| EarI | CTCTTC | 5 cut(s) | 164, 285, 293, 326, 374 |
| EciI | GGCGGA | 2 cut(s) | 116, 128 |
| EcoRI | GAATTC | 1 cut(s) | 18 |
| FaiI | YATR | 1 cut(s) | 176 |
| FaqI | GGGAC | 1 cut(s) | 71 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 3 cut(s) | 89, 92, 99 |
| FokI | GGATG | 3 cut(s) | 194, 200, 377 |
| Fsp4HI | GCNGC | 3 cut(s) | 89, 92, 99 |
| GluI | GCNGC | 3 cut(s) | 89, 92, 99 |
| GsuI | CTGGAG | 1 cut(s) | 128 |
| HaeIII | GGCC | 1 cut(s) | 281 |
| HinfI | GANTC | 3 cut(s) | 62, 217, 341 |
| Hpy188I | TCNGA | 4 cut(s) | 17, 24, 67, 136 |
| Hpy188III | TCNNGA | 3 cut(s) | 34, 203, 221 |
| Hpy99I | CGWCG | 1 cut(s) | 145 |
| HpyAV | CCTTC | 2 cut(s) | 73, 241 |
| HpyCH4V | TGCA | 2 cut(s) | 88, 310 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 278 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 2 cut(s) | 3, 12 |
| LmnI | GCTCC | 3 cut(s) | 70, 103, 136 |
| LpnPI | CCDG | 4 cut(s) | 19, 92, 164, 296 |
| Lsp1109I | GCAGC | 2 cut(s) | 100, 103 |
| MalI | GATC | 2 cut(s) | 5, 14 |
| MboI | GATC | 2 cut(s) | 3, 12 |
| MboII | GAAGA | 8 cut(s) | 181, 247, 302, 307, 310, 340, 343, 391 |
| MfeI | CAATTG | 1 cut(s) | 74 |
| MluCI | AATT | 3 cut(s) | 18, 74, 386 |
| MmeI | TCCRAC | 2 cut(s) | 114, 222 |
| MseI | TTAA | 2 cut(s) | 147, 354 |
| MspCI | CTTAAG | 1 cut(s) | 146 |
| MunI | CAATTG | 1 cut(s) | 74 |
| MvnI | CGCG | 1 cut(s) | 98 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 278 |
| NdeII | GATC | 2 cut(s) | 3, 12 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| PfeI | GAWTC | 3 cut(s) | 62, 217, 341 |
| PkrI | GCNGC | 3 cut(s) | 90, 93, 100 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| PstI | CTGCAG | 1 cut(s) | 90 |
| SaqAI | TTAA | 2 cut(s) | 147, 354 |
| SatI | GCNGC | 3 cut(s) | 89, 92, 99 |
| Sau3AI | GATC | 2 cut(s) | 3, 12 |
| SetI | ASST | 4 cut(s) | 11, 84, 108, 134 |
| SfcI | CTRYAG | 1 cut(s) | 86 |
| SmlI | CTYRAG | 1 cut(s) | 146 |
| SmoI | CTYRAG | 1 cut(s) | 146 |
| Sse9I | AATT | 3 cut(s) | 18, 74, 386 |
| SsiI | CCGC | 3 cut(s) | 98, 101, 113 |
| TaqI | TCGA | 2 cut(s) | 11, 222 |
| TasI | AATT | 3 cut(s) | 18, 74, 386 |
| TauI | GCSGC | 1 cut(s) | 101 |
| TfiI | GAWTC | 3 cut(s) | 62, 217, 341 |
| Tru1I | TTAA | 2 cut(s) | 147, 354 |
| Tru9I | TTAA | 2 cut(s) | 147, 354 |
| TseI | GCWGC | 2 cut(s) | 88, 91 |
| TspDTI | ATGAA | 1 cut(s) | 392 |
| Vha464I | CTTAAG | 1 cut(s) | 146 |
| XapI | RAATTY | 1 cut(s) | 18 |