Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000498.1

Orthogroup ID

OG0019463

Physical Location & Seq

Genomic Coordinates Reverse (-)

73018 .. 74844

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000498.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggcaaaaaacttgagtagcgattggtggcctgccattggtatttgcgacggcatttttcagtcgcaaaattcttacgacgacaaatggtttgccgtcgccaataatcttgccacagcgcatttgccgttgcaaatactattgacgacgccaccaattgcgtctgaagcactgccatcgccaatgctattttgtgacggcaaaagaggcttttgccacggcatggcgccgtggctgttgcaatttttttttgtagtggagactcacgataacatcatcactcggccgctggatacgaagcaccggctcaatgacacagttttgcacaccgagtttcaggttaacgacgagaccatgagtgtgctggggtcatgggagggcatgatggagatgtgcgcgcatctgcttagtgttgccctccaagggatgggggacgaatcagaagagcaattgaaggttctgcagcagcatgcgactgagttggaggcggaagccgttgccttaggaggcattggagagggagacgattatgctggaagaggatgtgagcaagttccacgagatgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006325 GO:0006342 GO:0006355 GO:0006396 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0006996 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009620 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010495 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016043 GO:0016070 GO:0016246 GO:0016441 GO:0016458 GO:0019219 GO:0019222 GO:0030422 GO:0031047 GO:0031048 GO:0031050 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0034641 GO:0035194 GO:0040029 GO:0042221 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043331 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050832 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070013 GO:0070887 GO:0070918 GO:0070919 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0098542 GO:1901360 GO:1901698 GO:1901699 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RdRP

Protein Analysis

189

Amino Acids

20.92

Weight (kDa)

4.47

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019463)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007377 RLG00000024706
rosa_multiflora	Rmu_sc0000498.1_g000015 Rmu_ssc0000152.1_g000004
rosa_roxburghii	Rroxscaffold_5G00337790
rosa_samantha	Rh2AG294900 Rh2DG319000 Rh4CG046500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	2 cut(s)	223, 427
AccII	CGCG	1 cut(s)	398
AciI	CCGC	2 cut(s)	287, 488
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	70
AcuI	CTGAAG	1 cut(s)	186
AcyI	GRCGYC	2 cut(s)	149, 227
AfiI	CCNNNNNNNGG	4 cut(s)	38, 223, 423, 427
AgsI	TTSAA	1 cut(s)	454
Alw26I	GTCTC	3 cut(s)	254, 344, 516
AoxI	GGCC	2 cut(s)	29, 284
ApeKI	GCWGC	2 cut(s)	463, 466
ApoI	RAATTY	1 cut(s)	70
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
AspLEI	GCGC	4 cut(s)	121, 229, 398, 400
AxyI	CCTNAGG	1 cut(s)	502
BanI	GGYRCC	1 cut(s)	226
BauI	CACGAG	1 cut(s)	558
BbvI	GCAGC	2 cut(s)	475, 478
BccI	CCATC	3 cut(s)	184, 379, 421
BceAI	ACGGC	7 cut(s)	67, 80, 112, 214, 214, 235, 479
BcgI	CGANNNNNNTGC	2 cut(s)	159, 193
BciVI	GTATCC	1 cut(s)	286
BcoDI	GTCTC	3 cut(s)	254, 344, 516
BfmI	CTRYAG	1 cut(s)	461
BfoI	RGCGCY	1 cut(s)	230
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	287, 464, 467
BlsI	GCNGC	3 cut(s)	288, 465, 468
BmiI	GGNNCC	1 cut(s)	228
BmsI	GCATC	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	34
BsaHI	GRCGYC	2 cut(s)	149, 227
BsaI	GGTCTC	1 cut(s)	344
BsaJI	CCNNGG	3 cut(s)	217, 230, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 223, 423, 427
Bse118I	RCCGGY	1 cut(s)	303
Bse21I	CCTNAGG	1 cut(s)	502
BseDI	CCNNGG	3 cut(s)	217, 230, 421
BseGI	GGATG	2 cut(s)	432, 548
BseLI	CCNNNNNNNGG	4 cut(s)	38, 223, 423, 427
BseMII	CTCAG	1 cut(s)	468
BsePI	GCGCGC	1 cut(s)	396
BseX3I	CGGCCG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	475, 478
BseYI	CCCAGC	1 cut(s)	364
Bsh1236I	CGCG	1 cut(s)	398
Bsh1285I	CGRYCG	1 cut(s)	287
BshFI	GGCC	2 cut(s)	31, 286
BshNI	GGYRCC	1 cut(s)	226
BsiEI	CGRYCG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	446
BslI	CCNNNNNNNGG	4 cut(s)	38, 223, 423, 427
BsmAI	GTCTC	3 cut(s)	254, 344, 516
BsmBI	CGTCTC	1 cut(s)	516
BsmFI	GGGAC	1 cut(s)	446
BsnI	GGCC	2 cut(s)	31, 286
Bso31I	GGTCTC	1 cut(s)	344
BspACI	CCGC	2 cut(s)	287, 488
BspANI	GGCC	2 cut(s)	31, 286
BspCNI	CTCAG	1 cut(s)	469
BspFNI	CGCG	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	465
BspQI	GCTCTTC	1 cut(s)	438
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	344
BsrFI	RCCGGY	1 cut(s)	303
BssAI	RCCGGY	1 cut(s)	303
BssECI	CCNNGG	3 cut(s)	217, 230, 421
BssHII	GCGCGC	1 cut(s)	396
BssNI	GRCGYC	2 cut(s)	149, 227
BssSI	CACGAG	1 cut(s)	558
BssT1I	CCWWGG	1 cut(s)	421
Bst2BI	CACGAG	1 cut(s)	558
Bst4CI	ACNGT	1 cut(s)	319
Bst6I	CTCTTC	2 cut(s)	438, 532
BstACI	GRCGYC	2 cut(s)	149, 227
BstC8I	GCNNGC	3 cut(s)	33, 398, 471
BstDEI	CTNAG	3 cut(s)	407, 477, 502
BstDSI	CCRYGG	2 cut(s)	217, 230
BstF5I	GGATG	2 cut(s)	432, 548
BstFNI	CGCG	1 cut(s)	398
BstH2I	RGCGCY	1 cut(s)	230
BstHHI	GCGC	4 cut(s)	121, 229, 398, 400
BstMAI	GTCTC	3 cut(s)	254, 344, 516
BstMCI	CGRYCG	1 cut(s)	287
BstMWI	GCNNNNNNNGC	2 cut(s)	167, 207
BstNSI	RCATGY	1 cut(s)	473
BstSFI	CTRYAG	1 cut(s)	461
BstUI	CGCG	1 cut(s)	398
BstV1I	GCAGC	2 cut(s)	475, 478
BstZI	CGGCCG	1 cut(s)	284
Bsu36I	CCTNAGG	1 cut(s)	502
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	31, 286
BtgI	CCRYGG	2 cut(s)	217, 230
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	2 cut(s)	432, 548
BtsI	GCAGTG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	170
Cac8I	GCNNGC	3 cut(s)	33, 398, 471
CfoI	GCGC	4 cut(s)	121, 229, 398, 400
Cfr10I	RCCGGY	1 cut(s)	303
CseI	GACGC	2 cut(s)	150, 157
CviAII	CATG	5 cut(s)	223, 355, 372, 382, 470
CviJI	RGCY	6 cut(s)	31, 210, 235, 286, 307, 494
CviKI_1	RGCY	6 cut(s)	31, 210, 235, 286, 307, 494
DdeI	CTNAG	3 cut(s)	407, 477, 502
DinI	GGCGCC	1 cut(s)	228
EaeI	YGGCCR	1 cut(s)	284
EagI	CGGCCG	1 cut(s)	284
Eam1104I	CTCTTC	2 cut(s)	438, 532
EarI	CTCTTC	2 cut(s)	438, 532
EciI	GGCGGA	1 cut(s)	503
EclXI	CGGCCG	1 cut(s)	284
Eco130I	CCWWGG	1 cut(s)	421
Eco31I	GGTCTC	1 cut(s)	344
Eco52I	CGGCCG	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	421
EgeI	GGCGCC	1 cut(s)	228
EheI	GGCGCC	1 cut(s)	228
ErhI	CCWWGG	1 cut(s)	421
Esp3I	CGTCTC	1 cut(s)	516
FaeI	CATG	5 cut(s)	226, 358, 375, 385, 473
FaiI	YATR	6 cut(s)	224, 356, 373, 383, 471, 531
FaqI	GGGAC	1 cut(s)	446
FatI	CATG	5 cut(s)	222, 354, 371, 381, 469
Fnu4HI	GCNGC	3 cut(s)	287, 464, 467
FokI	GGATG	2 cut(s)	439, 555
Fsp4HI	GCNGC	3 cut(s)	287, 464, 467
GlaI	GCGC	4 cut(s)	120, 228, 397, 399
GluI	GCNGC	3 cut(s)	287, 464, 467
GsaI	CCCAGC	1 cut(s)	368
HaeII	RGCGCY	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	31, 286
HapII	CCGG	1 cut(s)	304
HgaI	GACGC	2 cut(s)	150, 157
HhaI	GCGC	4 cut(s)	121, 229, 398, 400
Hin1I	GRCGYC	2 cut(s)	149, 227
Hin1II	CATG	5 cut(s)	226, 358, 375, 385, 473
Hin6I	GCGC	4 cut(s)	119, 227, 396, 398
HinP1I	GCGC	4 cut(s)	119, 227, 396, 398
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HinfI	GANTC	2 cut(s)	262, 437
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	304
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	2 cut(s)	166, 442
Hpy188III	TCNNGA	1 cut(s)	266
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	5 cut(s)	53, 83, 101, 151, 350
HpyAV	CCTTC	1 cut(s)	448
HpyCH4III	ACNGT	1 cut(s)	319
HpyCH4V	TGCA	4 cut(s)	133, 241, 325, 463
HpyF10VI	GCNNNNNNNGC	2 cut(s)	167, 207
HpyF3I	CTNAG	3 cut(s)	407, 477, 502
Hsp92I	GRCGYC	2 cut(s)	149, 227
Hsp92II	CATG	5 cut(s)	226, 358, 375, 385, 473
HspAI	GCGC	4 cut(s)	119, 227, 396, 398
KasI	GGCGCC	1 cut(s)	226
KspAI	GTTAAC	1 cut(s)	343
LguI	GCTCTTC	1 cut(s)	438
LpnPI	CCDG	6 cut(s)	45, 275, 317, 323, 350, 519
Lsp1109I	GCAGC	2 cut(s)	475, 478
LweI	GCATC	1 cut(s)	409
MaeIII	GTNAC	1 cut(s)	194
MboII	GAAGA	2 cut(s)	455, 549
MfeI	CAATTG	2 cut(s)	156, 449
MluCI	AATT	4 cut(s)	70, 156, 242, 449
Mly113I	GGCGCC	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	256
MmeI	TCCRAC	1 cut(s)	462
MnlI	CCTC	7 cut(s)	200, 370, 428, 478, 500, 511, 533
MseI	TTAA	1 cut(s)	342
MslI	CAYNNNNRTG	1 cut(s)	359
MspA1I	CMGCKG	1 cut(s)	289
MspI	CCGG	1 cut(s)	304
MunI	CAATTG	2 cut(s)	156, 449
MvnI	CGCG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	167, 207
NarI	GGCGCC	1 cut(s)	227
NlaIII	CATG	5 cut(s)	226, 358, 375, 385, 473
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	194
NspI	RCATGY	1 cut(s)	473
PaeI	GCATGC	1 cut(s)	473
PauI	GCGCGC	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	437
PflMI	CCANNNNNTGG	2 cut(s)	223, 427
PkrI	GCNGC	3 cut(s)	288, 465, 468
PleI	GAGTC	1 cut(s)	256
PluTI	GGCGCC	1 cut(s)	230
PpsI	GAGTC	1 cut(s)	256
PspFI	CCCAGC	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	228
PstI	CTGCAG	1 cut(s)	465
PteI	GCGCGC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	438
SaqAI	TTAA	1 cut(s)	342
SatI	GCNGC	3 cut(s)	287, 464, 467
SchI	GAGTC	1 cut(s)	256
SetI	ASST	2 cut(s)	342, 459
SfaNI	GCATC	1 cut(s)	409
SfcI	CTRYAG	1 cut(s)	461
SfoI	GGCGCC	1 cut(s)	228
SmiMI	CAYNNNNRTG	1 cut(s)	359
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	473
Sse9I	AATT	4 cut(s)	70, 156, 242, 449
SsiI	CCGC	2 cut(s)	287, 488
SspDI	GGCGCC	1 cut(s)	226
StyI	CCWWGG	1 cut(s)	421
TaaI	ACNGT	1 cut(s)	319
TasI	AATT	4 cut(s)	70, 156, 242, 449
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	1 cut(s)	437
Tru1I	TTAA	1 cut(s)	342
Tru9I	TTAA	1 cut(s)	342
TscAI	CASTG	1 cut(s)	177
TseFI	GTSAC	1 cut(s)	194
TseI	GCWGC	2 cut(s)	463, 466
Tsp45I	GTSAC	1 cut(s)	194
TspRI	CASTG	1 cut(s)	177
Van91I	CCANNNNNTGG	2 cut(s)	223, 427
XapI	RAATTY	1 cut(s)	70
XceI	RCATGY	1 cut(s)	473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.