RLG00000007451

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
16967623 .. 16968012
390 bp
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UTR
Exon/CDS
Intron
RLM00000007451

Sequence Viewer

Length: 390 bp
ATGGAGAACCCAAAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGTTGGATTTGTTGACAGCTCTACAGAGCCAATGGCTCCTCCAACTCCCACCTTTGAAGTGGATTCATTGCCAGTTGGATTTGTTGATTCATTGCCAGTTGGATTTGTTGATAGCTCTACAAAGCCAATGGCTCCTCCAGCTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCGGAGATGGATCGGATCGTTCGAAGGAGCTTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCGGGATAAGGGAGAGAAGACACCCAAACTACAATCAGAATAGAAATGTAATCTATTGGATGAGCATCTTGAAACCTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.58

Weight (kDa)

5.12

Isoelectric Point (pI)

72.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 258, 263
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 315
AgsI TTSAA 3 cut(s) 104, 200, 379
AluBI AGCT 5 cut(s) 25, 66, 162, 188, 270
AluI AGCT 5 cut(s) 25, 66, 162, 188, 270
AlwI GGATC 2 cut(s) 258, 263
AsuC2I CCSGG 2 cut(s) 216, 310
AsuII TTCGAA 1 cut(s) 262
BauI CACGAG 1 cut(s) 224
BbsI GAAGAC 1 cut(s) 331
BccI CCATC 1 cut(s) 241
BcnI CCSGG 2 cut(s) 216, 310
BfmI CTRYAG 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 216, 310
BmiI GGNNCC 2 cut(s) 84, 180
BmrFI CCNGG 2 cut(s) 216, 310
BmsI GCATC 1 cut(s) 381
BpiI GAAGAC 1 cut(s) 331
BpmI CTGGAG 1 cut(s) 168
Bpu14I TTCGAA 1 cut(s) 262
BpuMI CCSGG 2 cut(s) 216, 310
BsaBI GATNNNNATC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 240
Bsc4I CCNNNNNNNGG 1 cut(s) 315
Bse1I ACTGG 3 cut(s) 47, 119, 143
Bse3DI GCAATG 3 cut(s) 41, 113, 137
Bse8I GATNNNNATC 1 cut(s) 371
BseDI CCNNGG 1 cut(s) 240
BseGI GGATG 3 cut(s) 235, 282, 372
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 315
BseMI GCAATG 3 cut(s) 41, 113, 137
BseNI ACTGG 3 cut(s) 47, 119, 143
BseRI GAGGAG 2 cut(s) 75, 171
BsiSI CCGG 2 cut(s) 215, 309
BslI CCNNNNNNNGG 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 262
Bsp143I GATC 2 cut(s) 250, 255
BspLI GGNNCC 2 cut(s) 84, 180
BspPI GGATC 2 cut(s) 258, 263
BspT104I TTCGAA 1 cut(s) 262
BsrDI GCAATG 3 cut(s) 41, 113, 137
BsrI ACTGG 3 cut(s) 47, 119, 143
BssECI CCNNGG 1 cut(s) 240
BssMI GATC 2 cut(s) 250, 255
BssSI CACGAG 1 cut(s) 224
Bst2BI CACGAG 1 cut(s) 224
BstBI TTCGAA 1 cut(s) 262
BstF5I GGATG 3 cut(s) 235, 282, 372
BstKTI GATC 2 cut(s) 253, 258
BstMBI GATC 2 cut(s) 250, 255
BstMWI GCNNNNNNNGC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 214, 308
BstSFI CTRYAG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 331
BtsCI GGATG 3 cut(s) 235, 282, 372
DpnI GATC 2 cut(s) 252, 257
DpnII GATC 2 cut(s) 250, 255
Eco57I CTGAAG 1 cut(s) 51
FokI GGATG 3 cut(s) 242, 289, 379
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 2 cut(s) 215, 309
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 3 cut(s) 38, 110, 134
HpaII CCGG 2 cut(s) 215, 309
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 3 cut(s) 244, 255, 345
Hpy188III TCNNGA 3 cut(s) 29, 224, 376
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 258
HpyCH4V TGCA 2 cut(s) 289, 300
HpyF10VI GCNNNNNNNGC 1 cut(s) 185
Kzo9I GATC 2 cut(s) 250, 255
LmnI GCTCC 4 cut(s) 88, 184, 193, 267
LpnPI CCDG 7 cut(s) 42, 60, 132, 156, 198, 228, 322
LweI GCATC 1 cut(s) 381
MalI GATC 2 cut(s) 252, 257
MboI GATC 2 cut(s) 250, 255
MboII GAAGA 1 cut(s) 336
MluCI AATT 1 cut(s) 280
MmeI TCCRAC 4 cut(s) 31, 103, 113, 127
MnlI CCTC 5 cut(s) 96, 192, 220, 222, 250
MseI TTAA 1 cut(s) 388
MslI CAYNNNNRTG 1 cut(s) 228
MspI CCGG 2 cut(s) 215, 309
MspR9I CCNGG 2 cut(s) 216, 310
MwoI GCNNNNNNNGC 1 cut(s) 185
NciI CCSGG 2 cut(s) 216, 310
NdeII GATC 2 cut(s) 250, 255
NlaIV GGNNCC 2 cut(s) 84, 180
NspV TTCGAA 1 cut(s) 262
PcsI WCGNNNNNNNCGW 1 cut(s) 259
PfeI GAWTC 3 cut(s) 38, 110, 134
PspN4I GGNNCC 2 cut(s) 84, 180
RseI CAYNNNNRTG 1 cut(s) 228
SaqAI TTAA 1 cut(s) 388
Sau3AI GATC 2 cut(s) 250, 255
ScrFI CCNGG 2 cut(s) 216, 310
SetI ASST 8 cut(s) 27, 68, 101, 164, 190, 197, 272, 385
SfaNI GCATC 1 cut(s) 381
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 262
SmiMI CAYNNNNRTG 1 cut(s) 228
Sse9I AATT 1 cut(s) 280
StyD4I CCNGG 2 cut(s) 214, 308
TaqI TCGA 1 cut(s) 262
TasI AATT 1 cut(s) 280
TfiI GAWTC 3 cut(s) 38, 110, 134
Tru1I TTAA 1 cut(s) 388
Tru9I TTAA 1 cut(s) 388
TspDTI ATGAA 4 cut(s) 30, 102, 126, 293
XcmI CCANNNNNNNNNTGG 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.