Rh1DG402600

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0020638
Physical Location & Seq
Forward (+)
62236184 .. 62236648
465 bp
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UTR
Exon/CDS
Intron
Rh1DG402600.1

Sequence Viewer

Length: 465 bp
ATGGAAAACCCAGAAGCAAATAAGCTTCCTGAAGTGGATTCATTGCCAAATGGATTTGTTGACAGCTCCACAGAACCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCGGAGATGGATCGTTCGAAGGAGCTTGTGGATGAATTGGGTGTAAATGAGTTGCAAACGAGCCGGGATAAGAGAGAGAAGACACCCAAACTGAGAGCCTTTCTTGTTCTATTATCAGAAACTGATAGTTTTGATGCTTCAGTAGAGTCAGTTGAAGTTCCGAAGAAGGCTGCTATGGAGCAGACAGCAGAAGGTTCAGTAGTTGTGCCTGCGTCAGCTGATTATGCATTTGAGGCCGCAATTCAGGCATCTGGTTGCAGTGAAGTAAAGGAACAAGTTGAAACAAAATGTGTGAGCTCAGAGAGACGTAAATATCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Taxilin

Protein Analysis

154

Amino Acids

16.87

Weight (kDa)

4.45

Isoelectric Point (pI)

52.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 381
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 2 cut(s) 51, 267
AgsI TTSAA 3 cut(s) 104, 299, 425
AluBI AGCT 5 cut(s) 25, 66, 169, 362, 441
AluI AGCT 5 cut(s) 25, 66, 169, 362, 441
Alw21I GWGCWC 1 cut(s) 443
Alw26I GTCTC 1 cut(s) 442
AlwI GGATC 1 cut(s) 162
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 378
ApeKI GCWGC 1 cut(s) 314
AsuC2I CCSGG 2 cut(s) 120, 209
AsuII TTCGAA 1 cut(s) 161
BanII GRGCYC 1 cut(s) 443
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 301
BccI CCATC 1 cut(s) 145
BcnI CCSGG 2 cut(s) 120, 209
BcoDI GTCTC 1 cut(s) 442
BisI GCNGC 2 cut(s) 315, 381
BlsI GCNGC 2 cut(s) 316, 382
Bme1390I CCNGG 2 cut(s) 120, 209
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 120, 209
BmsI GCATC 2 cut(s) 268, 401
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 120, 209
BsaJI CCNNGG 1 cut(s) 144
Bse1I ACTGG 1 cut(s) 84
Bse3DI GCAATG 1 cut(s) 41
BseDI CCNNGG 1 cut(s) 144
BseGI GGATG 2 cut(s) 139, 181
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 2 cut(s) 227, 456
BseNI ACTGG 1 cut(s) 84
BseRI GAGGAG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 301
BshFI GGCC 1 cut(s) 380
BsiHKAI GWGCWC 1 cut(s) 443
BsiSI CCGG 2 cut(s) 119, 208
BsmAI GTCTC 1 cut(s) 442
BsmBI CGTCTC 1 cut(s) 442
BsnI GGCC 1 cut(s) 380
Bsp119I TTCGAA 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 443
Bsp143I GATC 1 cut(s) 154
BspACI CCGC 1 cut(s) 381
BspANI GGCC 1 cut(s) 380
BspCNI CTCAG 2 cut(s) 228, 455
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 354
BstDEI CTNAG 2 cut(s) 236, 442
BstF5I GGATG 2 cut(s) 139, 181
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 442
BstMBI GATC 1 cut(s) 154
BstMWI GCNNNNNNNGC 3 cut(s) 368, 377, 389
BstSCI CCNGG 2 cut(s) 118, 207
BstV1I GCAGC 1 cut(s) 301
BstV2I GAAGAC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 380
BtsCI GGATG 2 cut(s) 139, 181
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 77, 409
Cac8I GCNNGC 1 cut(s) 354
CaiI CAGNNNCTG 1 cut(s) 266
CseI GACGC 1 cut(s) 345
DdeI CTNAG 2 cut(s) 236, 442
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 441
Eco24I GRGCYC 1 cut(s) 443
Eco53kI GAGCTC 1 cut(s) 441
Eco57I CTGAAG 2 cut(s) 51, 267
EcoICRI GAGCTC 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 373
EcoT38I GRGCYC 1 cut(s) 443
Esp3I CGTCTC 1 cut(s) 442
FaiI YATR 2 cut(s) 320, 369
Fnu4HI GCNGC 2 cut(s) 315, 381
FokI GGATG 2 cut(s) 146, 188
FriOI GRGCYC 1 cut(s) 443
Fsp4HI GCNGC 2 cut(s) 315, 381
GluI GCNGC 2 cut(s) 315, 381
HaeIII GGCC 1 cut(s) 380
HapII CCGG 2 cut(s) 119, 208
HgaI GACGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HindIII AAGCTT 1 cut(s) 23
HinfI GANTC 2 cut(s) 38, 290
HpaII CCGG 2 cut(s) 119, 208
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 4 cut(s) 148, 262, 306, 445
Hpy188III TCNNGA 2 cut(s) 29, 128
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 3 cut(s) 157, 304, 329
HpyCH4IV ACGT 1 cut(s) 451
HpyCH4V TGCA 3 cut(s) 199, 371, 402
HpyF10VI GCNNNNNNNGC 3 cut(s) 368, 377, 389
HpyF3I CTNAG 2 cut(s) 236, 442
HpySE526I ACGT 1 cut(s) 451
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 4 cut(s) 71, 88, 166, 322
LpnPI CCDG 8 cut(s) 24, 42, 65, 132, 221, 366, 374, 381
Lsp1109I GCAGC 1 cut(s) 301
LweI GCATC 2 cut(s) 268, 401
MaeII ACGT 1 cut(s) 451
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 235, 319
MhlI GDGCHC 1 cut(s) 443
MluCI AATT 2 cut(s) 179, 384
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 113
MnlI CCTC 5 cut(s) 96, 124, 126, 154, 370
Mph1103I ATGCAT 1 cut(s) 373
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 362
MspI CCGG 2 cut(s) 119, 208
MspR9I CCNGG 2 cut(s) 120, 209
MwoI GCNNNNNNNGC 3 cut(s) 368, 377, 389
NciI CCSGG 2 cut(s) 120, 209
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 84
NsiI ATGCAT 1 cut(s) 373
NspV TTCGAA 1 cut(s) 161
PfeI GAWTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 316, 382
PleI GAGTC 1 cut(s) 298
PpsI GAGTC 1 cut(s) 298
Psp124BI GAGCTC 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 84
PstNI CAGNNNCTG 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 362
RseI CAYNNNNRTG 1 cut(s) 132
SacI GAGCTC 1 cut(s) 443
SatI GCNGC 2 cut(s) 315, 381
Sau3AI GATC 1 cut(s) 154
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 2 cut(s) 120, 209
SduI GDGCHC 1 cut(s) 443
SetI ASST 8 cut(s) 27, 68, 101, 171, 340, 364, 443, 454
SfaNI GCATC 2 cut(s) 268, 401
SfuI TTCGAA 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 179, 384
SsiI CCGC 1 cut(s) 381
SstI GAGCTC 1 cut(s) 443
StyD4I CCNGG 2 cut(s) 118, 207
TaiI ACGT 1 cut(s) 454
TaqI TCGA 1 cut(s) 161
TasI AATT 2 cut(s) 179, 384
TauI GCSGC 1 cut(s) 383
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 2 cut(s) 84, 409
TseI GCWGC 1 cut(s) 314
TspDTI ATGAA 2 cut(s) 30, 192
TspRI CASTG 2 cut(s) 84, 409
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.