Rh5DG455800

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
72546540 .. 72547192
653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG455800.1

Sequence Viewer

Length: 258 bp
ATGGTTAAAGTGGAGAACCCAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTACCAGTTGGATTTGTTGACAGCTCCACAAAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAAGATGATAATGCCTCGGAGATGGATCGTTCGAAGGAGCTTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCGGGATAAGGGAGAGAAGACACCTAAACTACAATCAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

85

Amino Acids

9.35

Weight (kDa)

4.42

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 171
AcuI CTGAAG 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 223
AgsI TTSAA 1 cut(s) 113
AluBI AGCT 3 cut(s) 34, 75, 178
AluI AGCT 3 cut(s) 34, 75, 178
AlwI GGATC 1 cut(s) 171
AsuC2I CCSGG 2 cut(s) 129, 218
AsuII TTCGAA 1 cut(s) 170
BbsI GAAGAC 1 cut(s) 239
BccI CCATC 1 cut(s) 154
BcnI CCSGG 2 cut(s) 129, 218
Bme1390I CCNGG 2 cut(s) 129, 218
BmiI GGNNCC 1 cut(s) 93
BmrFI CCNGG 2 cut(s) 129, 218
BpiI GAAGAC 1 cut(s) 239
Bpu14I TTCGAA 1 cut(s) 170
BpuMI CCSGG 2 cut(s) 129, 218
BsaJI CCNNGG 1 cut(s) 153
Bsc4I CCNNNNNNNGG 1 cut(s) 223
Bse1I ACTGG 2 cut(s) 56, 93
BseDI CCNNGG 1 cut(s) 153
BseGI GGATG 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 223
BseNI ACTGG 2 cut(s) 56, 93
BseRI GAGGAG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 128, 217
BslI CCNNNNNNNGG 1 cut(s) 223
Bsp119I TTCGAA 1 cut(s) 170
Bsp143I GATC 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 170
BsrI ACTGG 2 cut(s) 56, 93
BssECI CCNNGG 1 cut(s) 153
BssMI GATC 1 cut(s) 163
BstBI TTCGAA 1 cut(s) 170
BstF5I GGATG 1 cut(s) 190
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstSCI CCNGG 2 cut(s) 127, 216
BstV2I GAAGAC 1 cut(s) 239
BtsCI GGATG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 86
CviJI RGCY 7 cut(s) 34, 75, 85, 92, 124, 178, 216
CviKI_1 RGCY 7 cut(s) 34, 75, 85, 92, 124, 178, 216
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 60
FokI GGATG 1 cut(s) 197
HapII CCGG 2 cut(s) 128, 217
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HinfI GANTC 1 cut(s) 47
HpaII CCGG 2 cut(s) 128, 217
Hpy166II GTNNAC 1 cut(s) 70
Hpy188I TCNGA 2 cut(s) 157, 253
Hpy188III TCNNGA 2 cut(s) 38, 137
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 1 cut(s) 166
HpyCH4V TGCA 2 cut(s) 197, 208
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 3 cut(s) 80, 97, 175
LpnPI CCDG 6 cut(s) 33, 51, 69, 74, 141, 230
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 152, 244
MluCI AATT 1 cut(s) 188
MmeI TCCRAC 2 cut(s) 40, 122
MnlI CCTC 3 cut(s) 105, 135, 163
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 141
MspI CCGG 2 cut(s) 128, 217
MspR9I CCNGG 2 cut(s) 129, 218
NciI CCSGG 2 cut(s) 129, 218
NdeII GATC 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 93
NspV TTCGAA 1 cut(s) 170
PfeI GAWTC 1 cut(s) 47
PspN4I GGNNCC 1 cut(s) 93
RseI CAYNNNNRTG 1 cut(s) 141
SaqAI TTAA 1 cut(s) 6
Sau3AI GATC 1 cut(s) 163
ScrFI CCNGG 2 cut(s) 129, 218
SetI ASST 5 cut(s) 36, 77, 110, 180, 241
SfuI TTCGAA 1 cut(s) 170
SmiMI CAYNNNNRTG 1 cut(s) 141
Sse9I AATT 1 cut(s) 188
StyD4I CCNGG 2 cut(s) 127, 216
TaqI TCGA 1 cut(s) 170
TasI AATT 1 cut(s) 188
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 1 cut(s) 93
TspDTI ATGAA 2 cut(s) 39, 201
TspRI CASTG 1 cut(s) 93
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.