Rh4CG280000

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
Physical Location & Seq
Reverse (-)
53650022 .. 53650270
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG280000.1

Sequence Viewer

Length: 249 bp
ATGGAGAACCTAGAAGCAAATCAGCTTCCTGAAGTGGATTCATTGCCAGTTGGATTTGTTGACAGCTCTACAGAGCCATTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCCGGGCAATCACGAGGATGATAATGCCTCAGAGATGGATCGTTCGAAGGAGCTTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCGGGATAAAGGAGAGAAGACACCCAAACTACAATTAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

82

Amino Acids

9.06

Weight (kDa)

4.2

Isoelectric Point (pI)

49.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 51
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 3 cut(s) 25, 66, 169
AluI AGCT 3 cut(s) 25, 66, 169
AlwI GGATC 1 cut(s) 162
AsuC2I CCSGG 2 cut(s) 120, 209
AsuII TTCGAA 1 cut(s) 161
BauI CACGAG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 230
BccI CCATC 1 cut(s) 145
BcnI CCSGG 2 cut(s) 120, 209
BfaI CTAG 1 cut(s) 11
BfmI CTRYAG 1 cut(s) 69
Bme1390I CCNGG 2 cut(s) 120, 209
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 2 cut(s) 120, 209
BpiI GAAGAC 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 161
BpuMI CCSGG 2 cut(s) 120, 209
Bse1I ACTGG 1 cut(s) 47
Bse3DI GCAATG 1 cut(s) 41
BseGI GGATG 2 cut(s) 139, 181
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 159
BseNI ACTGG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 75
BsiSI CCGG 2 cut(s) 119, 208
Bsp119I TTCGAA 1 cut(s) 161
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 162
BspT104I TTCGAA 1 cut(s) 161
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 1 cut(s) 47
BssMI GATC 1 cut(s) 154
BssSI CACGAG 1 cut(s) 128
Bst2BI CACGAG 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 145
BstF5I GGATG 2 cut(s) 139, 181
BstKTI GATC 1 cut(s) 157
BstMBI GATC 1 cut(s) 154
BstSCI CCNGG 2 cut(s) 118, 207
BstSFI CTRYAG 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 230
BtsCI GGATG 2 cut(s) 139, 181
CviJI RGCY 7 cut(s) 25, 66, 76, 83, 115, 169, 207
CviKI_1 RGCY 7 cut(s) 25, 66, 76, 83, 115, 169, 207
DdeI CTNAG 1 cut(s) 145
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 51
FokI GGATG 2 cut(s) 146, 188
FspBI CTAG 1 cut(s) 11
HapII CCGG 2 cut(s) 119, 208
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 38
HpaII CCGG 2 cut(s) 119, 208
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 1 cut(s) 148
Hpy188III TCNNGA 2 cut(s) 29, 128
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 1 cut(s) 157
HpyCH4V TGCA 2 cut(s) 188, 199
HpyF3I CTNAG 1 cut(s) 145
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 88, 166
LpnPI CCDG 4 cut(s) 42, 60, 132, 221
MaeI CTAG 1 cut(s) 11
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 1 cut(s) 235
MluCI AATT 2 cut(s) 179, 239
MmeI TCCRAC 2 cut(s) 31, 113
MnlI CCTC 4 cut(s) 96, 124, 126, 154
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 119, 208
MspR9I CCNGG 2 cut(s) 120, 209
NciI CCSGG 2 cut(s) 120, 209
NdeII GATC 1 cut(s) 154
NlaIV GGNNCC 1 cut(s) 84
NspV TTCGAA 1 cut(s) 161
PfeI GAWTC 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 132
Sau3AI GATC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 120, 209
SetI ASST 5 cut(s) 12, 27, 68, 101, 171
SfcI CTRYAG 1 cut(s) 69
SfuI TTCGAA 1 cut(s) 161
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 2 cut(s) 179, 239
SspMI CTAG 1 cut(s) 11
StyD4I CCNGG 2 cut(s) 118, 207
TaqI TCGA 1 cut(s) 161
TasI AATT 2 cut(s) 179, 239
TfiI GAWTC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 30, 192
XspI CTAG 1 cut(s) 11
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.