Rh7CG192400

isoform X1

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Forward (+)
16980482 .. 16980949
468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG192400.1

Sequence Viewer

Length: 318 bp
ATGGATAACCCAAAAGCAAATCAACTTCCTGAAGTGGATTCATTGCCAGTTGGATTTGTTGACAGTTCCATAGAGCCACTGGCTCCTCCAACTCCCACCTTTGAACAAGAGAAGCCTCTGAGCAATCACGAAGATGATAATGCCTCGAAGATGGATCGTTTGAAGGAGCTTGTGGATGAATTGGGTGCAAATGAGTTGCAAACGAGCCGGGATAAGGGAGAGAGACACCCAAACTACAATCAGAATAGAAATGTAATCTATTGGATGAGCATCTTGAAACCTTCGCAACAACCAAGTCTTGTGCAACCAGACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

105

Amino Acids

11.91

Weight (kDa)

4.57

Isoelectric Point (pI)

53.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020638)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007451
rosa_multiflora Rmu_sc0005450.1_g000010
rosa_samantha Rh1DG402600 Rh4CG280000 Rh5DG455800 Rh7CG192400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 162
AcuI CTGAAG 1 cut(s) 51
AfiI CCNNNNNNNGG 1 cut(s) 214
AflIII ACRYGT 1 cut(s) 312
AgsI TTSAA 3 cut(s) 104, 163, 277
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 1 cut(s) 162
AsuC2I CCSGG 1 cut(s) 209
BccI CCATC 1 cut(s) 145
BcnI CCSGG 1 cut(s) 209
BcoDI GTCTC 1 cut(s) 217
Bme1390I CCNGG 1 cut(s) 209
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 209
BmsI GCATC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 209
BsaBI GATNNNNATC 1 cut(s) 269
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 2 cut(s) 47, 84
Bse3DI GCAATG 1 cut(s) 41
Bse8I GATNNNNATC 1 cut(s) 269
BseGI GGATG 2 cut(s) 181, 270
BseJI GATNNNNATC 1 cut(s) 269
BseLI CCNNNNNNNGG 1 cut(s) 214
BseMI GCAATG 1 cut(s) 41
BseMII CTCAG 1 cut(s) 110
BseNI ACTGG 2 cut(s) 47, 84
BseRI GAGGAG 1 cut(s) 75
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 217
Bsp143I GATC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 162
BsrDI GCAATG 1 cut(s) 41
BsrI ACTGG 2 cut(s) 47, 84
BssMI GATC 1 cut(s) 154
Bst4CI ACNGT 1 cut(s) 65
BstDEI CTNAG 1 cut(s) 119
BstF5I GGATG 2 cut(s) 181, 270
BstKTI GATC 1 cut(s) 157
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 1 cut(s) 154
BstNSI RCATGY 1 cut(s) 316
BstSCI CCNGG 1 cut(s) 207
BtsCI GGATG 2 cut(s) 181, 270
BtsIMutI CAGTG 1 cut(s) 77
CviAII CATG 1 cut(s) 313
CviJI RGCY 5 cut(s) 76, 83, 115, 169, 207
CviKI_1 RGCY 5 cut(s) 76, 83, 115, 169, 207
DdeI CTNAG 1 cut(s) 119
DpnI GATC 1 cut(s) 156
DpnII GATC 1 cut(s) 154
Eco57I CTGAAG 1 cut(s) 51
FaeI CATG 1 cut(s) 316
FaiI YATR 2 cut(s) 71, 314
FatI CATG 1 cut(s) 312
FokI GGATG 2 cut(s) 188, 277
HapII CCGG 1 cut(s) 208
Hin1II CATG 1 cut(s) 316
HincII GTYRAC 1 cut(s) 61
HindII GTYRAC 1 cut(s) 61
HinfI GANTC 1 cut(s) 38
HpaII CCGG 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 61
Hpy188I TCNGA 2 cut(s) 120, 243
Hpy188III TCNNGA 3 cut(s) 29, 128, 274
Hpy8I GTNNAC 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 157, 291
HpyCH4III ACNGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 188, 199, 304
HpyF3I CTNAG 1 cut(s) 119
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 154
LmnI GCTCC 2 cut(s) 88, 166
LpnPI CCDG 4 cut(s) 42, 60, 65, 221
LweI GCATC 1 cut(s) 279
MalI GATC 1 cut(s) 156
MboI GATC 1 cut(s) 154
MboII GAAGA 2 cut(s) 143, 160
MluCI AATT 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 31, 113
MnlI CCTC 3 cut(s) 96, 126, 154
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 1 cut(s) 208
MspR9I CCNGG 1 cut(s) 209
NciI CCSGG 1 cut(s) 209
NdeII GATC 1 cut(s) 154
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 84
NspI RCATGY 1 cut(s) 316
PciI ACATGT 1 cut(s) 312
PfeI GAWTC 1 cut(s) 38
PscI ACATGT 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 132
Sau3AI GATC 1 cut(s) 154
ScrFI CCNGG 1 cut(s) 209
SetI ASST 3 cut(s) 101, 171, 283
SfaNI GCATC 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 132
Sse9I AATT 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 207
TaaI ACNGT 1 cut(s) 65
TaqI TCGA 1 cut(s) 146
TasI AATT 1 cut(s) 179
TfiI GAWTC 1 cut(s) 38
TscAI CASTG 1 cut(s) 84
TspDTI ATGAA 2 cut(s) 30, 192
TspRI CASTG 1 cut(s) 84
XceI RCATGY 1 cut(s) 316
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.