RLG00000007934

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0021525
Physical Location & Seq
Forward (+)
23164674 .. 23165243
570 bp
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UTR
Exon/CDS
Intron
RLM00000007934

Sequence Viewer

Length: 312 bp
ATGAACGAGGACGAGTGGGGAGGAACTGATGAGGTCGTGAAGATCAGGAATGGAAGTCCGGCCAAAGCTGAGGCTGAGAGCACGGAGAAGGTGGACTCCAAGCTTACTGAGCTGAATAAGTGCTTGGTAGATTTGTTTTATGGGATTGAAATGGGCTTTCGGGCTGGGTCGGAGGTGAGAGCACAAGTGATGGAGTTGGTTAACCAGTTAAAAGTGGCAAATCCCACTCTGGTGCCGATGAAGAACCCAGGGCTACTTGATGGCAACTGGGTTTTACTGTACGGCGGCGGGAAGGAGAGAAGGGAGGTGTAA

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

4.87

Isoelectric Point (pI)

30.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 37 - 99 1.7e-15 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0021525)

Species Orthologous Gene IDs
rosa_laevigata RLG00000007934 RLG00000019510
rosa_multiflora Rmu_sc0003322.1_g000005 Rmu_sc0007667.1_g000001
rosa_samantha Rh5DG400000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 232
AciI CCGC 2 cut(s) 285, 288
AcoI YGGCCR 1 cut(s) 60
AfaI GTAC 1 cut(s) 281
AgsI TTSAA 1 cut(s) 149
AjnI CCWGG 1 cut(s) 247
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 3 cut(s) 68, 103, 112
AluI AGCT 3 cut(s) 68, 103, 112
Alw21I GWGCWC 2 cut(s) 83, 184
AoxI GGCC 1 cut(s) 60
AsuHPI GGTGA 1 cut(s) 187
BanI GGYRCC 1 cut(s) 232
Bbv12I GWGCWC 2 cut(s) 83, 184
BbvCI CCTCAGC 1 cut(s) 69
BccI CCATC 2 cut(s) 184, 254
BceAI ACGGC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 249
BisI GCNGC 1 cut(s) 286
BlsI GCNGC 1 cut(s) 287
Bme1390I CCNGG 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 249
BmrI ACTGGG 1 cut(s) 277
BmuI ACTGGG 1 cut(s) 277
Bpu10I CCTNAGC 1 cut(s) 69
BsaJI CCNNGG 2 cut(s) 247, 248
Bse1I ACTGG 2 cut(s) 205, 272
BseBI CCWGG 1 cut(s) 249
BseDI CCNNGG 2 cut(s) 247, 248
BseMII CTCAG 3 cut(s) 60, 66, 99
BseNI ACTGG 2 cut(s) 205, 272
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 1 cut(s) 62
BshNI GGYRCC 1 cut(s) 232
BsiHKAI GWGCWC 2 cut(s) 83, 184
BsiSI CCGG 1 cut(s) 59
BsnI GGCC 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 83, 184
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 2 cut(s) 285, 288
BspANI GGCC 1 cut(s) 62
BspCNI CTCAG 3 cut(s) 61, 67, 100
BspLI GGNNCC 1 cut(s) 234
BspT107I GGYRCC 1 cut(s) 232
BsrI ACTGG 2 cut(s) 205, 272
BssECI CCNNGG 2 cut(s) 247, 248
BssMI GATC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 279
BstDEI CTNAG 3 cut(s) 69, 75, 108
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNI CCWGG 1 cut(s) 249
BstSCI CCNGG 1 cut(s) 247
BsuRI GGCC 1 cut(s) 62
Csp6I GTAC 1 cut(s) 280
CviJI RGCY 8 cut(s) 62, 68, 74, 103, 112, 156, 164, 253
CviKI_1 RGCY 8 cut(s) 62, 68, 74, 103, 112, 156, 164, 253
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 3 cut(s) 69, 75, 108
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 60
EcoRII CCWGG 1 cut(s) 247
FaiI YATR 1 cut(s) 141
FauI CCCGC 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 286
Fsp4HI GCNGC 1 cut(s) 286
GluI GCNGC 1 cut(s) 286
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 1 cut(s) 62
HapII CCGG 1 cut(s) 59
HincII GTYRAC 1 cut(s) 202
HindII GTYRAC 1 cut(s) 202
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 95
HpaI GTTAAC 1 cut(s) 202
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 187
Hpy166II GTNNAC 2 cut(s) 94, 202
Hpy188I TCNGA 1 cut(s) 172
Hpy188III TCNNGA 2 cut(s) 37, 46
Hpy8I GTNNAC 2 cut(s) 94, 202
HpyAV CCTTC 3 cut(s) 82, 286, 294
HpyCH4III ACNGT 1 cut(s) 279
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpyF3I CTNAG 3 cut(s) 69, 75, 108
KspAI GTTAAC 1 cut(s) 202
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 8 cut(s) 31, 72, 150, 215, 218, 234, 253, 261
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 2 cut(s) 52, 253
MhlI GDGCHC 2 cut(s) 83, 184
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 5 cut(s) 14, 25, 64, 166, 298
MseI TTAA 2 cut(s) 201, 209
MslI CAYNNNNRTG 1 cut(s) 230
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 249
MvaI CCWGG 1 cut(s) 249
MwoI GCNNNNNNNGC 1 cut(s) 109
NdeII GATC 1 cut(s) 42
NlaIV GGNNCC 1 cut(s) 234
OliI CACNNNNGTG 1 cut(s) 230
PasI CCCWGGG 1 cut(s) 248
PkrI GCNGC 1 cut(s) 287
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 247
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 230
SaqAI TTAA 2 cut(s) 201, 209
SatI GCNGC 1 cut(s) 286
Sau3AI GATC 1 cut(s) 42
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 249
SduI GDGCHC 2 cut(s) 83, 184
SetI ASST 7 cut(s) 36, 70, 93, 105, 114, 177, 309
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 2 cut(s) 285, 288
StyD4I CCNGG 1 cut(s) 247
TaaI ACNGT 1 cut(s) 279
TauI GCSGC 1 cut(s) 288
Tru1I TTAA 2 cut(s) 201, 209
Tru9I TTAA 2 cut(s) 201, 209
TspDTI ATGAA 2 cut(s) 17, 254
TspGWI ACGGA 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.