Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003322.1

Orthogroup ID

OG0021525

Physical Location & Seq

Genomic Coordinates Reverse (-)

23982 .. 28779

Gene Structure 4798 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003322.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atggtttttgttgttggtgacagtaacttttgtgatcttgttggaaatctcaccagcgtagtttttgttactggtgataatagcttttgtgacctcaccggaaatctcaccagcgtagcttttgttgctagtgacagtagcttttgtgacctcaccggagagcccgagtcgaaaatctctgaattagatcctctgttgaacaaggacgagtggggaggaactgatgaggtcgtgaagatcgggaatggaagtctgaccaaagctgaggctgagagcacggaggaggtggactctaagcttactgagctgaagaggtgcttggtagatttgttttatgggactgaattgggatttcgggtggggtcggaggtgagagctgaagtggtggagttggttaacaaattaaaggtggcgaatcccactccggcgccgactaagaacccggggctacttgatggcaactgggtttcactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

158

Amino Acids

16.9

Weight (kDa)

4.21

Isoelectric Point (pI)

24.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0021525)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007934 RLG00000019510
rosa_multiflora	Rmu_sc0003322.1_g000005 Rmu_sc0007667.1_g000001
rosa_samantha	Rh5DG400000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	182
AcuI	CTGAAG	2 cut(s)	329, 399
AcyI	GRCGYC	1 cut(s)	428
AgsI	TTSAA	1 cut(s)	199
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AluBI	AGCT	7 cut(s)	84, 119, 141, 263, 298, 307, 377
AluI	AGCT	7 cut(s)	84, 119, 141, 263, 298, 307, 377
Alw21I	GWGCWC	1 cut(s)	278
AlwI	GGATC	1 cut(s)	182
Ama87I	CYCGRG	2 cut(s)	164, 442
AspLEI	GCGC	1 cut(s)	430
AsuC2I	CCSGG	2 cut(s)	443, 444
AsuHPI	GGTGA	7 cut(s)	29, 43, 86, 88, 100, 145, 382
AvaI	CYCGRG	2 cut(s)	164, 442
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	165
Bbv12I	GWGCWC	1 cut(s)	278
BbvCI	CCTCAGC	1 cut(s)	264
BccI	CCATC	1 cut(s)	449
BcnI	CCSGG	2 cut(s)	443, 444
BfaI	CTAG	1 cut(s)	129
BfoI	RGCGCY	1 cut(s)	431
Bme1390I	CCNGG	2 cut(s)	443, 444
BmeT110I	CYCGRG	2 cut(s)	164, 442
BmiI	GGNNCC	1 cut(s)	429
BmrFI	CCNGG	2 cut(s)	443, 444
BmrI	ACTGGG	1 cut(s)	472
BmuI	ACTGGG	1 cut(s)	472
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
Bpu10I	CCTNAGC	1 cut(s)	264
BpuMI	CCSGG	2 cut(s)	443, 444
BsaHI	GRCGYC	1 cut(s)	428
BsaJI	CCNNGG	2 cut(s)	442, 443
BsaWI	WCCGGW	2 cut(s)	98, 155
Bse1I	ACTGG	2 cut(s)	76, 467
BseDI	CCNNGG	2 cut(s)	442, 443
BseMII	CTCAG	3 cut(s)	255, 261, 294
BseNI	ACTGG	2 cut(s)	76, 467
BseRI	GAGGAG	1 cut(s)	296
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	164, 442
BsiSI	CCGG	4 cut(s)	99, 156, 425, 443
BslFI	GGGAC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	352
BsoBI	CYCGRG	2 cut(s)	164, 442
Bsp1286I	GDGCHC	2 cut(s)	165, 278
Bsp143I	GATC	3 cut(s)	34, 187, 237
BspCNI	CTCAG	3 cut(s)	256, 262, 295
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	182
BspT107I	GGYRCC	1 cut(s)	427
BsrI	ACTGG	2 cut(s)	76, 467
BssECI	CCNNGG	2 cut(s)	442, 443
BssMI	GATC	3 cut(s)	34, 187, 237
BssNI	GRCGYC	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	23, 137, 474
Bst6I	CTCTTC	1 cut(s)	305
BstACI	GRCGYC	1 cut(s)	428
BstDEI	CTNAG	5 cut(s)	264, 270, 294, 303, 435
BstH2I	RGCGCY	1 cut(s)	431
BstHHI	GCGC	1 cut(s)	430
BstKTI	GATC	3 cut(s)	37, 190, 240
BstMBI	GATC	3 cut(s)	34, 187, 237
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 304
BstSCI	CCNGG	2 cut(s)	441, 442
BstX2I	RGATCY	1 cut(s)	187
BstYI	RGATCY	1 cut(s)	187
BtsIMutI	CAGTG	1 cut(s)	470
CfoI	GCGC	1 cut(s)	430
Cfr9I	CCCGGG	1 cut(s)	442
DdeI	CTNAG	5 cut(s)	264, 270, 294, 303, 435
DinI	GGCGCC	1 cut(s)	429
DpnI	GATC	3 cut(s)	36, 189, 239
DpnII	GATC	3 cut(s)	34, 187, 237
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Eco24I	GRGCYC	1 cut(s)	165
Eco57I	CTGAAG	2 cut(s)	329, 399
Eco88I	CYCGRG	2 cut(s)	164, 442
EcoT38I	GRGCYC	1 cut(s)	165
EgeI	GGCGCC	1 cut(s)	429
EheI	GGCGCC	1 cut(s)	429
FaiI	YATR	1 cut(s)	336
FalI	AAGNNNNNCTT	2 cut(s)	302, 334
FaqI	GGGAC	1 cut(s)	352
FriOI	GRGCYC	1 cut(s)	165
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	1 cut(s)	429
HaeII	RGCGCY	1 cut(s)	431
HapII	CCGG	4 cut(s)	99, 156, 425, 443
HhaI	GCGC	1 cut(s)	430
Hin1I	GRCGYC	1 cut(s)	428
Hin6I	GCGC	1 cut(s)	428
HinP1I	GCGC	1 cut(s)	428
HincII	GTYRAC	1 cut(s)	397
HindII	GTYRAC	1 cut(s)	397
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	3 cut(s)	167, 290, 415
HpaI	GTTAAC	1 cut(s)	397
HpaII	CCGG	4 cut(s)	99, 156, 425, 443
HphI	GGTGA	7 cut(s)	29, 43, 86, 88, 100, 145, 382
Hpy166II	GTNNAC	2 cut(s)	289, 397
Hpy188I	TCNGA	3 cut(s)	181, 255, 367
Hpy188III	TCNNGA	2 cut(s)	232, 241
Hpy8I	GTNNAC	2 cut(s)	289, 397
HpyCH4III	ACNGT	3 cut(s)	23, 137, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 304
HpyF3I	CTNAG	5 cut(s)	264, 270, 294, 303, 435
Hsp92I	GRCGYC	1 cut(s)	428
HspAI	GCGC	1 cut(s)	428
KasI	GGCGCC	1 cut(s)	427
KspAI	GTTAAC	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	34, 187, 237
LpnPI	CCDG	8 cut(s)	57, 67, 112, 124, 169, 438, 448, 456
MaeI	CTAG	1 cut(s)	129
MaeIII	GTNAC	6 cut(s)	17, 23, 67, 89, 131, 146
MalI	GATC	3 cut(s)	36, 189, 239
MboI	GATC	3 cut(s)	34, 187, 237
MboII	GAAGA	2 cut(s)	247, 322
MflI	RGATCY	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	165, 278
MluCI	AATT	3 cut(s)	182, 344, 401
Mly113I	GGCGCC	1 cut(s)	428
MlyI	GAGTC	2 cut(s)	176, 284
MmeI	TCCRAC	2 cut(s)	22, 345
MseI	TTAA	2 cut(s)	396, 404
MspI	CCGG	4 cut(s)	99, 156, 425, 443
MspR9I	CCNGG	2 cut(s)	443, 444
MwoI	GCNNNNNNNGC	2 cut(s)	125, 304
NarI	GGCGCC	1 cut(s)	428
NciI	CCSGG	2 cut(s)	443, 444
NdeII	GATC	3 cut(s)	34, 187, 237
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	4 cut(s)	17, 89, 131, 146
PfeI	GAWTC	1 cut(s)	415
PleI	GAGTC	2 cut(s)	175, 284
PluTI	GGCGCC	1 cut(s)	431
PpsI	GAGTC	2 cut(s)	175, 284
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	187
SaqAI	TTAA	2 cut(s)	396, 404
Sau3AI	GATC	3 cut(s)	34, 187, 237
SchI	GAGTC	2 cut(s)	176, 284
ScrFI	CCNGG	2 cut(s)	443, 444
SduI	GDGCHC	2 cut(s)	165, 278
SfoI	GGCGCC	1 cut(s)	429
SmaI	CCCGGG	1 cut(s)	444
Sse9I	AATT	3 cut(s)	182, 344, 401
SspDI	GGCGCC	1 cut(s)	427
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	2 cut(s)	441, 442
TaaI	ACNGT	3 cut(s)	23, 137, 474
TaqI	TCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	182, 344, 401
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	2 cut(s)	396, 404
Tru9I	TTAA	2 cut(s)	396, 404
TscAI	CASTG	1 cut(s)	477
TseFI	GTSAC	4 cut(s)	17, 89, 131, 146
Tsp45I	GTSAC	4 cut(s)	17, 89, 131, 146
TspGWI	ACGGA	1 cut(s)	293
TspMI	CCCGGG	1 cut(s)	442
TspRI	CASTG	1 cut(s)	477
XmaI	CCCGGG	1 cut(s)	442
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.