Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007667.1

Orthogroup ID

OG0021525

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2330

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007667.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 397 bp

tttccgaagcttcttgatcttcttgaggcactgcacggtggtcttggacggcgagacgagagggaattggcccaacccagagcccgagtcgaaaatctctgaattggatcctcagttgaacgaggacgagtggggaggaactgatgagatcatgaagattgggaatggaagtccggccaaagctgaggctgagagcacggaggaggtggactctaagcttactgagctgaagaggtgcttggtagatttgttttatgggactgaattgggatttcgggccgggtcagaggtgagagctgaagtggtggagttggttaacgaattgaaggtggcgaatcccactccggcgccgatgaagaacccggggctacttgatggcaactgggttttactgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0010287 GO:0016020 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

131

Amino Acids

14.53

Weight (kDa)

4.49

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021525)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000007934 RLG00000019510
rosa_multiflora	Rmu_sc0003322.1_g000005 Rmu_sc0007667.1_g000001
rosa_samantha	Rh5DG400000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	347
AclWI	GGATC	2 cut(s)	102, 115
AcoI	YGGCCR	1 cut(s)	175
AcuI	CTGAAG	2 cut(s)	249, 319
AcyI	GRCGYC	1 cut(s)	348
AgsI	TTSAA	2 cut(s)	119, 326
AjuI	GAANNNNNNNTTGG	2 cut(s)	222, 254
AluBI	AGCT	5 cut(s)	10, 183, 218, 227, 297
AluI	AGCT	5 cut(s)	10, 183, 218, 227, 297
Alw21I	GWGCWC	1 cut(s)	198
Alw26I	GTCTC	1 cut(s)	48
AlwI	GGATC	2 cut(s)	102, 115
Ama87I	CYCGRG	2 cut(s)	84, 362
AoxI	GGCC	3 cut(s)	69, 175, 277
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	70, 277
AsuC2I	CCSGG	3 cut(s)	281, 363, 364
AsuHPI	GGTGA	1 cut(s)	302
AvaI	CYCGRG	2 cut(s)	84, 362
BamHI	GGATCC	1 cut(s)	107
BanI	GGYRCC	1 cut(s)	347
BanII	GRGCYC	1 cut(s)	85
Bbv12I	GWGCWC	1 cut(s)	198
BbvCI	CCTCAGC	1 cut(s)	184
BccI	CCATC	1 cut(s)	369
BceAI	ACGGC	1 cut(s)	65
BcnI	CCSGG	3 cut(s)	281, 363, 364
BcoDI	GTCTC	1 cut(s)	48
BfoI	RGCGCY	1 cut(s)	351
Bme1390I	CCNGG	3 cut(s)	281, 363, 364
BmeT110I	CYCGRG	2 cut(s)	84, 362
BmgT120I	GGNCC	2 cut(s)	70, 277
BmiI	GGNNCC	2 cut(s)	109, 349
BmrFI	CCNGG	3 cut(s)	281, 363, 364
BmrI	ACTGGG	1 cut(s)	392
BmuI	ACTGGG	1 cut(s)	392
BplI	GAGNNNNNCTC	2 cut(s)	195, 227
Bpu10I	CCTNAGC	1 cut(s)	184
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	3 cut(s)	281, 363, 364
BsaHI	GRCGYC	1 cut(s)	348
BsaJI	CCNNGG	2 cut(s)	362, 363
Bse1I	ACTGG	1 cut(s)	387
BseDI	CCNNGG	2 cut(s)	362, 363
BseMII	CTCAG	4 cut(s)	126, 175, 181, 214
BseNI	ACTGG	1 cut(s)	387
BseRI	GAGGAG	1 cut(s)	216
BsgI	GTGCAG	1 cut(s)	17
BshFI	GGCC	3 cut(s)	71, 177, 279
BshNI	GGYRCC	1 cut(s)	347
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	2 cut(s)	84, 362
BsiSI	CCGG	4 cut(s)	174, 280, 345, 363
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	48
BsmBI	CGTCTC	1 cut(s)	48
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	3 cut(s)	71, 177, 279
BsoBI	CYCGRG	2 cut(s)	84, 362
Bsp1286I	GDGCHC	2 cut(s)	85, 198
Bsp143I	GATC	3 cut(s)	16, 107, 148
BspANI	GGCC	3 cut(s)	71, 177, 279
BspCNI	CTCAG	4 cut(s)	125, 176, 182, 215
BspHI	TCATGA	1 cut(s)	151
BspLI	GGNNCC	2 cut(s)	109, 349
BspPI	GGATC	2 cut(s)	102, 115
BspT107I	GGYRCC	1 cut(s)	347
BsrI	ACTGG	1 cut(s)	387
BssECI	CCNNGG	2 cut(s)	362, 363
BssMI	GATC	3 cut(s)	16, 107, 148
BssNI	GRCGYC	1 cut(s)	348
Bst4CI	ACNGT	2 cut(s)	38, 394
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	1 cut(s)	348
BstDEI	CTNAG	5 cut(s)	112, 184, 190, 214, 223
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	3 cut(s)	19, 110, 151
BstMAI	GTCTC	1 cut(s)	48
BstMBI	GATC	3 cut(s)	16, 107, 148
BstMWI	GCNNNNNNNGC	1 cut(s)	224
BstSCI	CCNGG	3 cut(s)	279, 361, 362
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuRI	GGCC	3 cut(s)	71, 177, 279
BtsI	GCAGTG	1 cut(s)	29
BtsIMutI	CAGTG	1 cut(s)	29
CciI	TCATGA	1 cut(s)	151
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	70, 277
Cfr9I	CCCGGG	1 cut(s)	362
CviAII	CATG	1 cut(s)	152
DdeI	CTNAG	5 cut(s)	112, 184, 190, 214, 223
DinI	GGCGCC	1 cut(s)	349
DpnI	GATC	3 cut(s)	18, 109, 150
DpnII	GATC	3 cut(s)	16, 107, 148
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco24I	GRGCYC	1 cut(s)	85
Eco57I	CTGAAG	2 cut(s)	249, 319
Eco88I	CYCGRG	2 cut(s)	84, 362
EcoT38I	GRGCYC	1 cut(s)	85
EgeI	GGCGCC	1 cut(s)	349
EheI	GGCGCC	1 cut(s)	349
Esp3I	CGTCTC	1 cut(s)	48
FaeI	CATG	1 cut(s)	155
FaiI	YATR	2 cut(s)	153, 256
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	85
GlaI	GCGC	1 cut(s)	349
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	71, 177, 279
HapII	CCGG	4 cut(s)	174, 280, 345, 363
HhaI	GCGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	348
Hin1II	CATG	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	317
HindII	GTYRAC	1 cut(s)	317
HindIII	AAGCTT	2 cut(s)	8, 216
HinfI	GANTC	3 cut(s)	87, 210, 335
HpaI	GTTAAC	1 cut(s)	317
HpaII	CCGG	4 cut(s)	174, 280, 345, 363
HphI	GGTGA	1 cut(s)	302
Hpy166II	GTNNAC	2 cut(s)	209, 317
Hpy188I	TCNGA	3 cut(s)	6, 101, 287
Hpy188III	TCNNGA	3 cut(s)	14, 23, 152
Hpy8I	GTNNAC	2 cut(s)	209, 317
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	2 cut(s)	38, 394
HpyCH4V	TGCA	1 cut(s)	34
HpyF10VI	GCNNNNNNNGC	1 cut(s)	224
HpyF3I	CTNAG	5 cut(s)	112, 184, 190, 214, 223
Hsp92I	GRCGYC	1 cut(s)	348
Hsp92II	CATG	1 cut(s)	155
HspAI	GCGC	1 cut(s)	348
KasI	GGCGCC	1 cut(s)	347
KspAI	GTTAAC	1 cut(s)	317
Kzo9I	GATC	3 cut(s)	16, 107, 148
LpnPI	CCDG	6 cut(s)	91, 187, 293, 358, 368, 376
MalI	GATC	3 cut(s)	18, 109, 150
MboI	GATC	3 cut(s)	16, 107, 148
MboII	GAAGA	4 cut(s)	11, 167, 242, 368
MflI	RGATCY	1 cut(s)	107
MhlI	GDGCHC	2 cut(s)	85, 198
MluCI	AATT	4 cut(s)	65, 102, 264, 321
Mly113I	GGCGCC	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	96, 204
MseI	TTAA	1 cut(s)	316
MspI	CCGG	4 cut(s)	174, 280, 345, 363
MspR9I	CCNGG	3 cut(s)	281, 363, 364
MwoI	GCNNNNNNNGC	1 cut(s)	224
NarI	GGCGCC	1 cut(s)	348
NciI	CCSGG	3 cut(s)	281, 363, 364
NdeII	GATC	3 cut(s)	16, 107, 148
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	109, 349
PagI	TCATGA	1 cut(s)	151
PfeI	GAWTC	1 cut(s)	335
PleI	GAGTC	2 cut(s)	95, 204
PluTI	GGCGCC	1 cut(s)	351
PpsI	GAGTC	2 cut(s)	95, 204
PspN4I	GGNNCC	2 cut(s)	109, 349
PspPI	GGNCC	2 cut(s)	70, 277
PsuI	RGATCY	1 cut(s)	107
SaqAI	TTAA	1 cut(s)	316
Sau3AI	GATC	3 cut(s)	16, 107, 148
Sau96I	GGNCC	2 cut(s)	70, 277
SchI	GAGTC	2 cut(s)	96, 204
ScrFI	CCNGG	3 cut(s)	281, 363, 364
SduI	GDGCHC	2 cut(s)	85, 198
SetI	ASST	9 cut(s)	12, 185, 208, 220, 229, 237, 292, 299, 331
SfoI	GGCGCC	1 cut(s)	349
SmaI	CCCGGG	1 cut(s)	364
SmlI	CTYRAG	1 cut(s)	23
SmoI	CTYRAG	1 cut(s)	23
Sse9I	AATT	4 cut(s)	65, 102, 264, 321
SspDI	GGCGCC	1 cut(s)	347
StyD4I	CCNGG	3 cut(s)	279, 361, 362
TaaI	ACNGT	2 cut(s)	38, 394
TaqI	TCGA	1 cut(s)	90
TasI	AATT	4 cut(s)	65, 102, 264, 321
TfiI	GAWTC	1 cut(s)	335
Tru1I	TTAA	1 cut(s)	316
Tru9I	TTAA	1 cut(s)	316
TscAI	CASTG	1 cut(s)	36
TspDTI	ATGAA	2 cut(s)	168, 369
TspGWI	ACGGA	1 cut(s)	213
TspMI	CCCGGG	1 cut(s)	362
TspRI	CASTG	1 cut(s)	36
XmaI	CCCGGG	1 cut(s)	362

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.