RLG00000010187

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0021523
Physical Location & Seq
Reverse (-)
63957001 .. 63959119
2119 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010187

Sequence Viewer

Length: 621 bp
ATGGTGGAGAAGGTCTCGACACGCATGGCTGCTACACTTGCTATCACAGATAATGGGAGGGTGTTCTTGGAGTCGCTGGAATGGCGACATTCTCTGGCAACTCATATGGGTGCCGGATATGTCCGGTGTTTAGTGGTCAGAGTGCAACAGGGAGGGAAGAAGGAAGGGAGCTCTTCCAATTCTACCCCTAACCCTAACCCTAGTGGGGCTTTGGTGTGCCGCGAACTCGAGTCGAGTTCGAAGGGCGTGCCTTTACGTCTGCGTGTGGGCTACAGTGCAGCGGTGCCGCTACCAACGATCATCAATCCTTTTTCTCCCTCTGGCTTTGTGCTTTCTGTCCCAGGTGTTTCGGTAAAAGAGTTAACTAGGCAGTTAGCACATTATTGTCCTAAGGAGGTTCTCTCGGTGATTCCTCCTCCTCGCCGACGTCTTGTTGCGGAGCGTGTGGTGGCTAGTGGAATGAAATGGTCTACAGATACCATGGAGCTGTTAACATACAATAAGAAGGCTAAGGCTGTAGTGCCTGTTCCCGAAACTACTTTTCGGATTTGTGCCGAAATTAGGGATCCCTCAATAGGTTGGAGAACTTCCAATTTCACCACCAAAGAAGCGCAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

207

Amino Acids

22.48

Weight (kDa)

9.87

Isoelectric Point (pI)

43.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021523)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010187
rosa_multiflora Rmu_sc0003264.1_g000030
rosa_samantha Rh4AG009700 Rh4CG010300
rosa_wichuraiana Rw4G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 430
AccB1I GGYRCC 2 cut(s) 110, 283
AccI GTMKAC 1 cut(s) 470
AccII CGCG 1 cut(s) 222
AciI CCGC 4 cut(s) 220, 281, 287, 437
AclWI GGATC 2 cut(s) 560, 573
AcyI GRCGYC 1 cut(s) 427
AfiI CCNNNNNNNGG 3 cut(s) 205, 561, 575
AjnI CCWGG 1 cut(s) 340
AluBI AGCT 2 cut(s) 171, 487
AluI AGCT 2 cut(s) 171, 487
Alw21I GWGCWC 1 cut(s) 173
Alw26I GTCTC 1 cut(s) 19
AlwI GGATC 2 cut(s) 560, 573
Ama87I CYCGRG 1 cut(s) 227
ApeKI GCWGC 2 cut(s) 29, 278
AspLEI GCGC 1 cut(s) 613
AsuHPI GGTGA 2 cut(s) 418, 589
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 227
AxyI CCTNAGG 1 cut(s) 390
BamHI GGATCC 1 cut(s) 565
BanI GGYRCC 2 cut(s) 110, 283
BanII GRGCYC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 2 cut(s) 16, 290
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 342
BcoDI GTCTC 1 cut(s) 19
BfaI CTAG 3 cut(s) 201, 366, 453
BfmI CTRYAG 3 cut(s) 271, 471, 516
BisI GCNGC 4 cut(s) 30, 220, 279, 287
BlsI GCNGC 4 cut(s) 31, 221, 280, 288
Bme1390I CCNGG 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 227
BmiI GGNNCC 3 cut(s) 112, 285, 567
BmrFI CCNGG 1 cut(s) 342
BplI GAGNNNNNCTC 3 cut(s) 31, 386, 418
Bpu10I CCTNAGC 1 cut(s) 510
Bpu14I TTCGAA 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 427
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 2 cut(s) 340, 480
BsaWI WCCGGW 1 cut(s) 123
Bsc4I CCNNNNNNNGG 3 cut(s) 205, 561, 575
Bse21I CCTNAGG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 342
BseDI CCNNGG 2 cut(s) 340, 480
BseLI CCNNNNNNNGG 3 cut(s) 205, 561, 575
BseRI GAGGAG 2 cut(s) 405, 408
BseXI GCAGC 2 cut(s) 16, 290
BsgI GTGCAG 1 cut(s) 297
Bsh1236I CGCG 1 cut(s) 222
BshNI GGYRCC 2 cut(s) 110, 283
BsiHKAI GWGCWC 1 cut(s) 173
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 2 cut(s) 114, 124
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 3 cut(s) 205, 561, 575
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 19
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 2 cut(s) 297, 565
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 4 cut(s) 220, 281, 287, 437
BspFNI CGCG 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 112, 285, 567
BspPI GGATC 2 cut(s) 560, 573
BspQI GCTCTTC 1 cut(s) 178
BspT104I TTCGAA 1 cut(s) 239
BspT107I GGYRCC 2 cut(s) 110, 283
BspTNI GGTCTC 1 cut(s) 19
BssECI CCNNGG 2 cut(s) 340, 480
BssMI GATC 2 cut(s) 297, 565
BssNI GRCGYC 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 1 cut(s) 275
Bst6I CTCTTC 1 cut(s) 178
BstACI GRCGYC 1 cut(s) 427
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 248
BstDEI CTNAG 2 cut(s) 390, 510
BstDSI CCRYGG 1 cut(s) 480
BstFNI CGCG 1 cut(s) 222
BstHHI GCGC 1 cut(s) 613
BstKTI GATC 2 cut(s) 300, 568
BstMAI GTCTC 1 cut(s) 19
BstMBI GATC 2 cut(s) 297, 565
BstMWI GCNNNNNNNGC 2 cut(s) 38, 82
BstNI CCWGG 1 cut(s) 342
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 3 cut(s) 271, 471, 516
BstUI CGCG 1 cut(s) 222
BstV1I GCAGC 2 cut(s) 16, 290
BstX2I RGATCY 1 cut(s) 565
BstYI RGATCY 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 390
BtgI CCRYGG 1 cut(s) 480
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 248
CfoI GCGC 1 cut(s) 613
CviAII CATG 2 cut(s) 25, 481
CviJI RGCY 9 cut(s) 29, 171, 209, 270, 324, 452, 487, 509, 515
CviKI_1 RGCY 9 cut(s) 29, 171, 209, 270, 324, 452, 487, 509, 515
DdeI CTNAG 2 cut(s) 390, 510
DpnI GATC 2 cut(s) 299, 567
DpnII GATC 2 cut(s) 297, 565
Eam1104I CTCTTC 1 cut(s) 178
EarI CTCTTC 1 cut(s) 178
Ecl136II GAGCTC 1 cut(s) 171
Eco130I CCWWGG 1 cut(s) 480
Eco24I GRGCYC 1 cut(s) 173
Eco31I GGTCTC 1 cut(s) 19
Eco53kI GAGCTC 1 cut(s) 171
Eco81I CCTNAGG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 171
EcoRII CCWGG 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 2 cut(s) 28, 484
FaiI YATR 6 cut(s) 26, 105, 107, 120, 482, 496
FaqI GGGAC 1 cut(s) 323
FatI CATG 2 cut(s) 24, 480
FauNDI CATATG 1 cut(s) 105
FblI GTMKAC 1 cut(s) 470
Fnu4HI GCNGC 4 cut(s) 30, 220, 279, 287
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 4 cut(s) 30, 220, 279, 287
FspBI CTAG 3 cut(s) 201, 366, 453
GlaI GCGC 1 cut(s) 612
GluI GCNGC 4 cut(s) 30, 220, 279, 287
HapII CCGG 2 cut(s) 114, 124
HhaI GCGC 1 cut(s) 613
Hin1I GRCGYC 1 cut(s) 427
Hin1II CATG 2 cut(s) 28, 484
Hin6I GCGC 1 cut(s) 611
HinP1I GCGC 1 cut(s) 611
HincII GTYRAC 2 cut(s) 363, 492
HindII GTYRAC 2 cut(s) 363, 492
HinfI GANTC 3 cut(s) 71, 230, 409
HpaI GTTAAC 2 cut(s) 363, 492
HpaII CCGG 2 cut(s) 114, 124
HphI GGTGA 2 cut(s) 418, 589
Hpy166II GTNNAC 3 cut(s) 363, 471, 492
Hpy188I TCNGA 2 cut(s) 140, 546
Hpy188III TCNNGA 2 cut(s) 16, 530
Hpy8I GTNNAC 3 cut(s) 363, 471, 492
Hpy99I CGWCG 1 cut(s) 429
HpyAV CCTTC 5 cut(s) 4, 154, 158, 235, 499
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 256, 427
HpyCH4V TGCA 2 cut(s) 145, 278
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 82
HpyF3I CTNAG 2 cut(s) 390, 510
HpySE526I ACGT 2 cut(s) 256, 427
Hsp92I GRCGYC 1 cut(s) 427
Hsp92II CATG 2 cut(s) 28, 484
HspAI GCGC 1 cut(s) 611
KspAI GTTAAC 2 cut(s) 363, 492
Kzo9I GATC 2 cut(s) 297, 565
LguI GCTCTTC 1 cut(s) 178
LmnI GCTCC 3 cut(s) 168, 439, 484
LpnPI CCDG 9 cut(s) 62, 80, 127, 134, 137, 306, 327, 354, 537
Lsp1109I GCAGC 2 cut(s) 16, 290
MaeI CTAG 3 cut(s) 201, 366, 453
MaeII ACGT 2 cut(s) 256, 427
MalI GATC 2 cut(s) 299, 567
MboI GATC 2 cut(s) 297, 565
MboII GAAGA 2 cut(s) 165, 169
MflI RGATCY 1 cut(s) 565
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 3 cut(s) 178, 558, 592
MlyI GAGTC 2 cut(s) 80, 239
MmeI TCCRAC 1 cut(s) 560
MnlI CCTC 8 cut(s) 51, 146, 328, 388, 423, 426, 429, 580
MseI TTAA 2 cut(s) 362, 491
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 281
MspI CCGG 2 cut(s) 114, 124
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 222
MwoI GCNNNNNNNGC 2 cut(s) 38, 82
NcoI CCATGG 1 cut(s) 480
NdeI CATATG 1 cut(s) 105
NdeII GATC 2 cut(s) 297, 565
NlaIII CATG 2 cut(s) 28, 484
NlaIV GGNNCC 3 cut(s) 112, 285, 567
NspV TTCGAA 1 cut(s) 239
PaeR7I CTCGAG 1 cut(s) 227
PciSI GCTCTTC 1 cut(s) 178
PfeI GAWTC 1 cut(s) 409
PkrI GCNGC 4 cut(s) 31, 221, 280, 288
PleI GAGTC 2 cut(s) 79, 238
PpsI GAGTC 2 cut(s) 79, 238
Psp124BI GAGCTC 1 cut(s) 173
Psp6I CCWGG 1 cut(s) 340
PspGI CCWGG 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 112, 285, 567
PspXI VCTCGAGB 1 cut(s) 227
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PsuI RGATCY 1 cut(s) 565
RseI CAYNNNNRTG 1 cut(s) 108
SacI GAGCTC 1 cut(s) 173
SapI GCTCTTC 1 cut(s) 178
SaqAI TTAA 2 cut(s) 362, 491
SatI GCNGC 4 cut(s) 30, 220, 279, 287
Sau3AI GATC 2 cut(s) 297, 565
SchI GAGTC 2 cut(s) 80, 239
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 173
SetI ASST 8 cut(s) 15, 173, 259, 346, 399, 430, 489, 580
SfcI CTRYAG 3 cut(s) 271, 471, 516
Sfr274I CTCGAG 1 cut(s) 227
SfuI TTCGAA 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 3 cut(s) 178, 558, 592
SsiI CCGC 4 cut(s) 220, 281, 287, 437
SspMI CTAG 3 cut(s) 201, 366, 453
SstI GAGCTC 1 cut(s) 173
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 2 cut(s) 259, 430
TaqI TCGA 4 cut(s) 17, 228, 233, 239
TasI AATT 3 cut(s) 178, 558, 592
TauI GCSGC 2 cut(s) 222, 289
TfiI GAWTC 1 cut(s) 409
Tru1I TTAA 2 cut(s) 362, 491
Tru9I TTAA 2 cut(s) 362, 491
TscAI CASTG 1 cut(s) 280
TseI GCWGC 2 cut(s) 29, 278
TspDTI ATGAA 1 cut(s) 476
TspRI CASTG 1 cut(s) 280
XhoI CTCGAG 1 cut(s) 227
XmiI GTMKAC 1 cut(s) 470
XspI CTAG 3 cut(s) 201, 366, 453
ZraI GACGTC 1 cut(s) 428
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.