Rh4AG009700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0021523
Physical Location & Seq
Forward (+)
1630446 .. 1630916
471 bp
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UTR
Exon/CDS
Intron
Rh4AG009700.1

Sequence Viewer

Length: 471 bp
ATGTCCGGTGTTCAGGTGGTGGTCAGAGTGCAGCAGGGAGGAACGAAGGAATGGAGCTCTTCAAATTCTACCCCTAACCCTAACCCTAGTGGGGCTTTGGTGTGCGGCAGACTCAAGTCGAGTTCGAAGGGCGTGCCTTTGCGTCCATGTGTGGGATGCAGTGTAGCAGTGCCACTACCAACGATCATCAATCCTTTTGCTCCCTCTGGCTTTGTGCTTTCTGTCCCAAGTGTTTCGACAAAAGAGTTAACTAGGCAGTTAGCACATTATCGTCCTAAGGAGGTTCTCTCGGTGATTCCTCCTCCTCACCGACGTCTTGTTGCAGAGCGTGTGGTGGCTAGTGGAATGAAGTGGTCTACAGATACCATGGAGCTGTTAACATACAATAAGAAGGCTAAGGCTGTAGTGCCTGTTCCCAAAACTACTTTTGTGGACTTAGGGTTTGTGCTGGAATTAGCGATCCCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.7

Weight (kDa)

10.03

Isoelectric Point (pI)

42.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021523)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010187
rosa_multiflora Rmu_sc0003264.1_g000030
rosa_samantha Rh4AG009700 Rh4CG010300
rosa_wichuraiana Rw4G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 316
AccI GTMKAC 1 cut(s) 356
AciI CCGC 1 cut(s) 105
AclWI GGATC 1 cut(s) 454
AcsI RAATTY 1 cut(s) 64
AcyI GRCGYC 1 cut(s) 313
AfiI CCNNNNNNNGG 2 cut(s) 91, 152
AgsI TTSAA 1 cut(s) 63
AluBI AGCT 2 cut(s) 57, 373
AluI AGCT 2 cut(s) 57, 373
Alw21I GWGCWC 1 cut(s) 59
AlwI GGATC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 425, 457
AsuHPI GGTGA 2 cut(s) 299, 304
AsuII TTCGAA 1 cut(s) 125
AxyI CCTNAGG 1 cut(s) 276
BanII GRGCYC 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 43
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BfaI CTAG 3 cut(s) 87, 252, 339
BfmI CTRYAG 2 cut(s) 357, 402
BisI GCNGC 2 cut(s) 32, 106
BlsI GCNGC 2 cut(s) 33, 107
BmsI GCATC 1 cut(s) 146
BoxI GACNNNNGTC 1 cut(s) 115
BplI GAGNNNNNCTC 2 cut(s) 272, 304
Bpu10I CCTNAGC 1 cut(s) 396
Bpu14I TTCGAA 1 cut(s) 125
BpuEI CTTGAG 1 cut(s) 98
BsaHI GRCGYC 1 cut(s) 313
BsaJI CCNNGG 1 cut(s) 366
BsaWI WCCGGW 1 cut(s) 5
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 152
Bse21I CCTNAGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 366
BseGI GGATG 1 cut(s) 161
BseLI CCNNNNNNNGG 2 cut(s) 91, 152
BseRI GAGGAG 2 cut(s) 291, 294
BseXI GCAGC 1 cut(s) 43
BsgI GTGCAG 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 59
BsiSI CCGG 1 cut(s) 6
BslFI GGGAC 1 cut(s) 209
BslI CCNNNNNNNGG 2 cut(s) 91, 152
BsmFI GGGAC 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 59
Bsp143I GATC 2 cut(s) 183, 459
Bsp19I CCATGG 1 cut(s) 366
BspACI CCGC 1 cut(s) 105
BspPI GGATC 1 cut(s) 454
BspQI GCTCTTC 1 cut(s) 64
BspT104I TTCGAA 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 366
BssMI GATC 2 cut(s) 183, 459
BssNI GRCGYC 1 cut(s) 313
BssT1I CCWWGG 1 cut(s) 366
Bst6I CTCTTC 1 cut(s) 64
BstACI GRCGYC 1 cut(s) 313
BstBI TTCGAA 1 cut(s) 125
BstC8I GCNNGC 1 cut(s) 134
BstDEI CTNAG 3 cut(s) 276, 396, 436
BstDSI CCRYGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 161
BstKTI GATC 2 cut(s) 186, 462
BstMBI GATC 2 cut(s) 183, 459
BstPAI GACNNNNGTC 1 cut(s) 115
BstSFI CTRYAG 2 cut(s) 357, 402
BstV1I GCAGC 1 cut(s) 43
Bsu36I CCTNAGG 1 cut(s) 276
BtgI CCRYGG 1 cut(s) 366
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 2 cut(s) 166, 174
BtsIMutI CAGTG 2 cut(s) 166, 174
Cac8I GCNNGC 1 cut(s) 134
CseI GACGC 1 cut(s) 131
CviAII CATG 2 cut(s) 147, 367
CviJI RGCY 7 cut(s) 57, 95, 210, 338, 373, 395, 401
CviKI_1 RGCY 7 cut(s) 57, 95, 210, 338, 373, 395, 401
DdeI CTNAG 3 cut(s) 276, 396, 436
DpnI GATC 2 cut(s) 185, 461
DpnII GATC 2 cut(s) 183, 459
Eam1104I CTCTTC 1 cut(s) 64
EarI CTCTTC 1 cut(s) 64
Ecl136II GAGCTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 366
Eco24I GRGCYC 1 cut(s) 59
Eco53kI GAGCTC 1 cut(s) 57
Eco81I CCTNAGG 1 cut(s) 276
EcoICRI GAGCTC 1 cut(s) 57
EcoT14I CCWWGG 1 cut(s) 366
EcoT38I GRGCYC 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 366
FaeI CATG 2 cut(s) 150, 370
FaiI YATR 3 cut(s) 148, 368, 382
FaqI GGGAC 1 cut(s) 209
FatI CATG 2 cut(s) 146, 366
FblI GTMKAC 1 cut(s) 356
Fnu4HI GCNGC 2 cut(s) 32, 106
FokI GGATG 1 cut(s) 168
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 2 cut(s) 32, 106
FspBI CTAG 3 cut(s) 87, 252, 339
GluI GCNGC 2 cut(s) 32, 106
HapII CCGG 1 cut(s) 6
HgaI GACGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 313
Hin1II CATG 2 cut(s) 150, 370
HincII GTYRAC 2 cut(s) 249, 378
HindII GTYRAC 2 cut(s) 249, 378
HinfI GANTC 2 cut(s) 111, 295
HpaI GTTAAC 2 cut(s) 249, 378
HpaII CCGG 1 cut(s) 6
HphI GGTGA 2 cut(s) 299, 304
Hpy166II GTNNAC 4 cut(s) 249, 357, 378, 433
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 4 cut(s) 249, 357, 378, 433
Hpy99I CGWCG 1 cut(s) 315
HpyAV CCTTC 3 cut(s) 40, 121, 385
HpyCH4IV ACGT 1 cut(s) 313
HpyCH4V TGCA 3 cut(s) 31, 159, 323
HpyF3I CTNAG 3 cut(s) 276, 396, 436
HpySE526I ACGT 1 cut(s) 313
Hsp92I GRCGYC 1 cut(s) 313
Hsp92II CATG 2 cut(s) 150, 370
KspAI GTTAAC 2 cut(s) 249, 378
Kzo9I GATC 2 cut(s) 183, 459
LguI GCTCTTC 1 cut(s) 64
LmnI GCTCC 3 cut(s) 54, 205, 370
LpnPI CCDG 5 cut(s) 19, 20, 192, 423, 434
Lsp1109I GCAGC 1 cut(s) 43
LweI GCATC 1 cut(s) 146
MaeI CTAG 3 cut(s) 87, 252, 339
MaeII ACGT 1 cut(s) 313
MalI GATC 2 cut(s) 185, 461
MboI GATC 2 cut(s) 183, 459
MboII GAAGA 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 2 cut(s) 64, 452
MlyI GAGTC 1 cut(s) 105
MnlI CCTC 6 cut(s) 32, 214, 274, 309, 312, 315
MseI TTAA 2 cut(s) 248, 377
MspI CCGG 1 cut(s) 6
NcoI CCATGG 1 cut(s) 366
NdeII GATC 2 cut(s) 183, 459
NlaIII CATG 2 cut(s) 150, 370
NspV TTCGAA 1 cut(s) 125
PciSI GCTCTTC 1 cut(s) 64
PfeI GAWTC 1 cut(s) 295
PkrI GCNGC 2 cut(s) 33, 107
PleI GAGTC 1 cut(s) 105
PpsI GAGTC 1 cut(s) 105
PshAI GACNNNNGTC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 59
PsrI GAACNNNNNNTAC 2 cut(s) 396, 428
SacI GAGCTC 1 cut(s) 59
SapI GCTCTTC 1 cut(s) 64
SaqAI TTAA 2 cut(s) 248, 377
SatI GCNGC 2 cut(s) 32, 106
Sau3AI GATC 2 cut(s) 183, 459
SchI GAGTC 1 cut(s) 105
SduI GDGCHC 1 cut(s) 59
SetI ASST 5 cut(s) 18, 59, 285, 316, 375
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 2 cut(s) 357, 402
SfuI TTCGAA 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 2 cut(s) 64, 452
SsiI CCGC 1 cut(s) 105
SspMI CTAG 3 cut(s) 87, 252, 339
SstI GAGCTC 1 cut(s) 59
StyI CCWWGG 1 cut(s) 366
TaiI ACGT 1 cut(s) 316
TaqI TCGA 3 cut(s) 119, 125, 236
TasI AATT 2 cut(s) 64, 452
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 295
Tru1I TTAA 2 cut(s) 248, 377
Tru9I TTAA 2 cut(s) 248, 377
TscAI CASTG 2 cut(s) 166, 174
TseI GCWGC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 362
TspRI CASTG 2 cut(s) 166, 174
XapI RAATTY 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 356
XspI CTAG 3 cut(s) 87, 252, 339
ZraI GACGTC 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.