Rmu_sc0003264.1_g000030

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003264.1
OG0021523
Physical Location & Seq
Forward (+)
128918 .. 130330
1413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003264.1_g000030.1.cds

Sequence Viewer

Length: 1188 bp
atggtggagaaggtcttaactcgcatggctgctacacagataatgggagggtgttcttggagtcgctggaatgaaggcaatctctggcagctcatatgccgttgggaggctcctttcctaaaagaaaaaaaatctgatcctgaacccttcatggccaccatggctaaggagcgcttcatcttgagattcaataaggggaggagagggacaagatcctgttcgggggggttgtggttctatggccgtaccatgtttacgttggttgcctacgatggatgcagcgagaaagtggcggtgcaaatctcaatgatacgggtctcggtggaagtgttagggttgcctctgatcttgatgactattgaagcgatggcgatgattggtgaatctccacgcaaggttctgcacttggacaagtcaaacatccggcatgtagtgaaggctagggtacagatttctcacgacatatcgacgtcggtgaaacaagcttatcctccggtatacgataaggtttttgaattttgccgtgtctgtggcttgttggaacacccgtcaactggctgtgcaggggtgctggatatgtccggtgttcaggtggtggttagagtgcagcaaggagggatgaaggaagggagctcttccaattctacccctaaccctaaccctagtggggctttggtgtgcggcgaactcgagtctggttcgaagggcgtgcctttgcgtccgtgtgtgggctacagtgcagtagtgccgctaccaacgatcatcaatccttttgctccctctggctttgtgctttttgtcccaggtgtttcggcaaaagagttaactaggcagttagcacattatcgtcctaaggaggttctcttggtgattcctcctcctcgccgacgtcttgttgaggagcatgtggtggctagtggaatgaagtggtctgtagataccatggagctgttaacatacaataagaaggctaaggttggagaacttccaatttcgcctccaaagaagtgcaaagttgaacgccctttaggtgtgaagaacaaaccaaagatcgaagatatcaatccttggaagcttgaggctgcagtctcgaagaaagtggcttctaaggttgctgtggccactgtggaggatgatcgttctatgagtcttgttactatggaacctggggatgccccctctgcgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

395

Amino Acids

43.42

Weight (kDa)

9.42

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021523)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010187
rosa_multiflora Rmu_sc0003264.1_g000030
rosa_samantha Rh4AG009700 Rh4CG010300
rosa_wichuraiana Rw4G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 473, 892
AccI GTMKAC 1 cut(s) 498
AciI CCGC 3 cut(s) 293, 681, 749
AclWI GGATC 2 cut(s) 131, 207
AcoI YGGCCR 3 cut(s) 153, 241, 1119
AcsI RAATTY 1 cut(s) 515
AcyI GRCGYC 2 cut(s) 470, 889
AfaI GTAC 2 cut(s) 247, 447
AfeI AGCGCT 1 cut(s) 173
AfiI CCNNNNNNNGG 5 cut(s) 106, 222, 554, 667, 728
AgsI TTSAA 4 cut(s) 190, 362, 515, 1019
AjnI CCWGG 2 cut(s) 802, 1165
AluBI AGCT 5 cut(s) 91, 485, 633, 949, 1075
AluI AGCT 5 cut(s) 91, 485, 633, 949, 1075
Alw21I GWGCWC 1 cut(s) 635
Alw26I GTCTC 2 cut(s) 322, 1093
AlwI GGATC 2 cut(s) 131, 207
Ama87I CYCGRG 1 cut(s) 689
Aor51HI AGCGCT 1 cut(s) 173
AoxI GGCC 3 cut(s) 153, 241, 1119
ApeKI GCWGC 5 cut(s) 29, 88, 279, 607, 1082
ApoI RAATTY 1 cut(s) 515
AspLEI GCGC 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 392, 487, 880
AsuII TTCGAA 1 cut(s) 701
AvaI CYCGRG 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 852
BalI TGGCCA 2 cut(s) 155, 1121
BanII GRGCYC 1 cut(s) 635
Bbv12I GWGCWC 1 cut(s) 635
BbvI GCAGC 5 cut(s) 16, 100, 291, 619, 1069
BccI CCATC 2 cut(s) 266, 361
BceAI ACGGC 3 cut(s) 84, 228, 507
BcgI CGANNNNNNTGC 2 cut(s) 691, 725
BciT130I CCWGG 2 cut(s) 804, 1167
BcoDI GTCTC 2 cut(s) 322, 1093
BfaI CTAG 4 cut(s) 441, 663, 828, 915
BfmI CTRYAG 3 cut(s) 733, 933, 1083
BfoI RGCGCY 1 cut(s) 175
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 7 cut(s) 30, 89, 280, 608, 682, 749, 1083
BlsI GCNGC 7 cut(s) 31, 90, 281, 609, 683, 750, 1084
Bme1390I CCNGG 2 cut(s) 804, 1167
BmeT110I CYCGRG 1 cut(s) 689
BmiI GGNNCC 2 cut(s) 111, 1164
BmrFI CCNGG 2 cut(s) 804, 1167
BmsI GCATC 2 cut(s) 266, 1162
Bpu10I CCTNAGC 2 cut(s) 165, 972
Bpu14I TTCGAA 1 cut(s) 701
BpuEI CTTGAG 2 cut(s) 202, 1097
BsaBI GATNNNNATC 1 cut(s) 1062
BsaHI GRCGYC 2 cut(s) 470, 889
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 5 cut(s) 159, 802, 942, 1067, 1166
BsaWI WCCGGW 2 cut(s) 493, 581
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 222, 554, 667, 728
Bse1I ACTGG 1 cut(s) 559
Bse21I CCTNAGG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 1062
BseBI CCWGG 2 cut(s) 804, 1167
BseDI CCNNGG 5 cut(s) 159, 802, 942, 1067, 1166
BseGI GGATG 5 cut(s) 281, 420, 624, 1138, 1177
BseJI GATNNNNATC 1 cut(s) 1062
BseLI CCNNNNNNNGG 5 cut(s) 106, 222, 554, 667, 728
BseNI ACTGG 1 cut(s) 559
BseRI GAGGAG 4 cut(s) 214, 867, 870, 914
BseXI GCAGC 5 cut(s) 16, 100, 291, 619, 1069
BsgI GTGCAG 4 cut(s) 386, 582, 626, 759
BshFI GGCC 3 cut(s) 155, 243, 1121
BsiHKAI GWGCWC 1 cut(s) 635
BsiHKCI CYCGRG 1 cut(s) 689
BsiSI CCGG 3 cut(s) 424, 494, 582
BslFI GGGAC 2 cut(s) 220, 785
BslI CCNNNNNNNGG 5 cut(s) 106, 222, 554, 667, 728
BsmAI GTCTC 2 cut(s) 322, 1093
BsmFI GGGAC 2 cut(s) 220, 785
BsnI GGCC 3 cut(s) 155, 243, 1121
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 689
Bsp119I TTCGAA 1 cut(s) 701
Bsp1286I GDGCHC 1 cut(s) 635
Bsp143I GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
Bsp19I CCATGG 2 cut(s) 159, 942
BspACI CCGC 3 cut(s) 293, 681, 749
BspANI GGCC 3 cut(s) 155, 243, 1121
BspLI GGNNCC 2 cut(s) 111, 1164
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 2 cut(s) 131, 207
BspQI GCTCTTC 1 cut(s) 640
BspT104I TTCGAA 1 cut(s) 701
BspTNI GGTCTC 1 cut(s) 322
BsrI ACTGG 1 cut(s) 559
BssECI CCNNGG 5 cut(s) 159, 802, 942, 1067, 1166
BssMI GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
BssNAI GTATAC 1 cut(s) 499
BssNI GRCGYC 2 cut(s) 470, 889
BssT1I CCWWGG 3 cut(s) 159, 942, 1067
Bst1107I GTATAC 1 cut(s) 499
Bst2UI CCWGG 2 cut(s) 804, 1167
Bst4CI ACNGT 2 cut(s) 737, 1126
Bst6I CTCTTC 1 cut(s) 640
BstACI GRCGYC 2 cut(s) 470, 889
BstBI TTCGAA 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 710
BstDEI CTNAG 4 cut(s) 165, 852, 972, 1107
BstDSI CCRYGG 2 cut(s) 159, 942
BstF5I GGATG 5 cut(s) 281, 420, 624, 1138, 1177
BstH2I RGCGCY 1 cut(s) 175
BstHHI GCGC 1 cut(s) 174
BstKTI GATC 6 cut(s) 139, 215, 348, 762, 1053, 1138
BstMAI GTCTC 2 cut(s) 322, 1093
BstMBI GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
BstMWI GCNNNNNNNGC 2 cut(s) 161, 1181
BstNI CCWGG 2 cut(s) 804, 1167
BstNSI RCATGY 2 cut(s) 431, 908
BstSCI CCNGG 2 cut(s) 802, 1165
BstSFI CTRYAG 3 cut(s) 733, 933, 1083
BstV1I GCAGC 5 cut(s) 16, 100, 291, 619, 1069
BstX2I RGATCY 1 cut(s) 212
BstYI RGATCY 1 cut(s) 212
BstZ17I GTATAC 1 cut(s) 499
Bsu36I CCTNAGG 1 cut(s) 852
BsuRI GGCC 3 cut(s) 155, 243, 1121
BtgI CCRYGG 2 cut(s) 159, 942
BtgZI GCGATG 2 cut(s) 380, 386
BtsCI GGATG 5 cut(s) 281, 420, 624, 1138, 1177
BtsIMutI CAGTG 2 cut(s) 742, 1122
Cac8I GCNNGC 1 cut(s) 710
CfoI GCGC 1 cut(s) 174
CseI GACGC 1 cut(s) 707
Csp6I GTAC 2 cut(s) 246, 446
CviAII CATG 7 cut(s) 25, 151, 160, 250, 428, 905, 943
CviQI GTAC 2 cut(s) 246, 446
DdeI CTNAG 4 cut(s) 165, 852, 972, 1107
DpnI GATC 6 cut(s) 138, 214, 347, 761, 1052, 1137
DpnII GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
EaeI YGGCCR 3 cut(s) 153, 241, 1119
Eam1104I CTCTTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 640
Ecl136II GAGCTC 1 cut(s) 633
Eco130I CCWWGG 3 cut(s) 159, 942, 1067
Eco24I GRGCYC 1 cut(s) 635
Eco31I GGTCTC 1 cut(s) 322
Eco32I GATATC 1 cut(s) 1060
Eco47III AGCGCT 1 cut(s) 173
Eco53kI GAGCTC 1 cut(s) 633
Eco81I CCTNAGG 1 cut(s) 852
Eco88I CYCGRG 1 cut(s) 689
EcoICRI GAGCTC 1 cut(s) 633
EcoRII CCWGG 2 cut(s) 802, 1165
EcoRV GATATC 1 cut(s) 1060
EcoT14I CCWWGG 3 cut(s) 159, 942, 1067
EcoT38I GRGCYC 1 cut(s) 635
ErhI CCWWGG 3 cut(s) 159, 942, 1067
FaeI CATG 7 cut(s) 28, 154, 163, 253, 431, 908, 946
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FaqI GGGAC 2 cut(s) 220, 785
FatI CATG 7 cut(s) 24, 150, 159, 249, 427, 904, 942
FauNDI CATATG 1 cut(s) 95
FblI GTMKAC 1 cut(s) 498
Fnu4HI GCNGC 7 cut(s) 30, 89, 280, 608, 682, 749, 1083
FokI GGATG 5 cut(s) 288, 407, 631, 1145, 1184
FriOI GRGCYC 1 cut(s) 635
Fsp4HI GCNGC 7 cut(s) 30, 89, 280, 608, 682, 749, 1083
FspBI CTAG 4 cut(s) 441, 663, 828, 915
GlaI GCGC 1 cut(s) 173
GluI GCNGC 7 cut(s) 30, 89, 280, 608, 682, 749, 1083
HaeII RGCGCY 1 cut(s) 175
HaeIII GGCC 3 cut(s) 155, 243, 1121
HapII CCGG 3 cut(s) 424, 494, 582
HgaI GACGC 1 cut(s) 707
HhaI GCGC 1 cut(s) 174
Hin1I GRCGYC 2 cut(s) 470, 889
Hin1II CATG 7 cut(s) 28, 154, 163, 253, 431, 908, 946
Hin6I GCGC 1 cut(s) 172
HinP1I GCGC 1 cut(s) 172
HincII GTYRAC 3 cut(s) 552, 825, 954
HindII GTYRAC 3 cut(s) 552, 825, 954
HindIII AAGCTT 2 cut(s) 483, 1073
HinfI GANTC 6 cut(s) 61, 186, 383, 692, 871, 1147
HpaI GTTAAC 2 cut(s) 825, 954
HpaII CCGG 3 cut(s) 424, 494, 582
HphI GGTGA 3 cut(s) 392, 487, 880
Hpy166II GTNNAC 5 cut(s) 255, 499, 552, 825, 954
Hpy188I TCNGA 2 cut(s) 136, 345
Hpy188III TCNNGA 5 cut(s) 140, 181, 349, 458, 1090
Hpy8I GTNNAC 5 cut(s) 255, 499, 552, 825, 954
Hpy99I CGWCG 3 cut(s) 472, 475, 891
HpyAV CCTTC 8 cut(s) 4, 68, 157, 430, 616, 620, 697, 961
HpyCH4III ACNGT 2 cut(s) 737, 1126
HpyCH4IV ACGT 3 cut(s) 257, 470, 889
HpyCH4V TGCA 8 cut(s) 279, 298, 403, 563, 607, 740, 1011, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 1181
HpyF3I CTNAG 4 cut(s) 165, 852, 972, 1107
HpySE526I ACGT 3 cut(s) 257, 470, 889
Hsp92I GRCGYC 2 cut(s) 470, 889
Hsp92II CATG 7 cut(s) 28, 154, 163, 253, 431, 908, 946
HspAI GCGC 1 cut(s) 172
KspAI GTTAAC 2 cut(s) 825, 954
Kzo9I GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
LguI GCTCTTC 1 cut(s) 640
LmnI GCTCC 6 cut(s) 115, 169, 630, 781, 901, 946
Lsp1109I GCAGC 5 cut(s) 16, 100, 291, 619, 1069
LweI GCATC 2 cut(s) 266, 1162
MaeI CTAG 4 cut(s) 441, 663, 828, 915
MaeII ACGT 3 cut(s) 257, 470, 889
MaeIII GTNAC 1 cut(s) 1153
MalI GATC 6 cut(s) 138, 214, 347, 761, 1052, 1137
MboI GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
MboII GAAGA 4 cut(s) 627, 1048, 1067, 1105
MflI RGATCY 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 635
MlsI TGGCCA 2 cut(s) 155, 1121
MluCI AATT 3 cut(s) 515, 640, 990
MluNI TGGCCA 2 cut(s) 155, 1121
MlyI GAGTC 3 cut(s) 70, 701, 1156
MmeI TCCRAC 2 cut(s) 519, 958
Mox20I TGGCCA 2 cut(s) 155, 1121
MscI TGGCCA 2 cut(s) 155, 1121
MseI TTAA 3 cut(s) 17, 824, 953
Msp20I TGGCCA 2 cut(s) 155, 1121
MspI CCGG 3 cut(s) 424, 494, 582
MspR9I CCNGG 2 cut(s) 804, 1167
MvaI CCWGG 2 cut(s) 804, 1167
MwoI GCNNNNNNNGC 2 cut(s) 161, 1181
NcoI CCATGG 2 cut(s) 159, 942
NdeI CATATG 1 cut(s) 95
NdeII GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
NlaIII CATG 7 cut(s) 28, 154, 163, 253, 431, 908, 946
NlaIV GGNNCC 2 cut(s) 111, 1164
NspI RCATGY 2 cut(s) 431, 908
NspV TTCGAA 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 689
PciSI GCTCTTC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 186, 383, 871
PkrI GCNGC 7 cut(s) 31, 90, 281, 609, 683, 750, 1084
PleI GAGTC 3 cut(s) 69, 700, 1155
PpsI GAGTC 3 cut(s) 69, 700, 1155
Psp124BI GAGCTC 1 cut(s) 635
Psp6I CCWGG 2 cut(s) 802, 1165
PspGI CCWGG 2 cut(s) 802, 1165
PspN4I GGNNCC 2 cut(s) 111, 1164
PspXI VCTCGAGB 1 cut(s) 689
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 1 cut(s) 212
RsaI GTAC 2 cut(s) 247, 447
RsaNI GTAC 2 cut(s) 246, 446
SacI GAGCTC 1 cut(s) 635
SapI GCTCTTC 1 cut(s) 640
SaqAI TTAA 3 cut(s) 17, 824, 953
SatI GCNGC 7 cut(s) 30, 89, 280, 608, 682, 749, 1083
Sau3AI GATC 6 cut(s) 136, 212, 345, 759, 1050, 1135
SchI GAGTC 3 cut(s) 70, 701, 1156
ScrFI CCNGG 2 cut(s) 804, 1167
SduI GDGCHC 1 cut(s) 635
SfaNI GCATC 2 cut(s) 266, 1162
SfcI CTRYAG 3 cut(s) 733, 933, 1083
Sfr274I CTCGAG 1 cut(s) 689
SfuI TTCGAA 1 cut(s) 701
SlaI CTCGAG 1 cut(s) 689
SmlI CTYRAG 3 cut(s) 181, 689, 1076
SmoI CTYRAG 3 cut(s) 181, 689, 1076
Sse9I AATT 3 cut(s) 515, 640, 990
SsiI CCGC 3 cut(s) 293, 681, 749
SspMI CTAG 4 cut(s) 441, 663, 828, 915
SstI GAGCTC 1 cut(s) 635
StyD4I CCNGG 2 cut(s) 802, 1165
StyI CCWWGG 3 cut(s) 159, 942, 1067
TaaI ACNGT 2 cut(s) 737, 1126
TaiI ACGT 3 cut(s) 260, 473, 892
TaqI TCGA 5 cut(s) 467, 690, 701, 1053, 1091
TasI AATT 3 cut(s) 515, 640, 990
TauI GCSGC 2 cut(s) 684, 751
TfiI GAWTC 3 cut(s) 186, 383, 871
Tru1I TTAA 3 cut(s) 17, 824, 953
Tru9I TTAA 3 cut(s) 17, 824, 953
TscAI CASTG 2 cut(s) 742, 1129
TseI GCWGC 5 cut(s) 29, 88, 279, 607, 1082
TspDTI ATGAA 5 cut(s) 87, 139, 166, 635, 938
TspGWI ACGGA 1 cut(s) 711
TspRI CASTG 2 cut(s) 742, 1129
XapI RAATTY 1 cut(s) 515
XceI RCATGY 2 cut(s) 431, 908
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 689
XmiI GTMKAC 1 cut(s) 498
XspI CTAG 4 cut(s) 441, 663, 828, 915
ZraI GACGTC 2 cut(s) 471, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.