Rw4G000170

C1 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0021523
Physical Location & Seq
Reverse (-)
283996 .. 285137
1142 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G000170.1

Sequence Viewer

Length: 1026 bp
ATGGTGGAGAAGGTCTTGACTCGCATGGCTGCTACACAGATAATGGGAGGGTGTTCTTGGAGTCGCTGGAATGAAGGCAATCTCTGGCAGCTCATATGCCGTTGGGAGGCTCCTTTCCTAAAAGAAAAAAAATCTGATCCCGAACCCTTCATAGCCACCATGGCTAAGGTATGGGGGCTGAAACAGCGTCTCATAATCTGGAATCACCAGGAGCGCTTCATCTTGAGATTCAATAAGAGGAGGAGAAGGACAAGATCATGTTCGGGGGGGTTGTGGTTCTATGGCCGTACCATGTTTACGTTGGTTGCCTACAATGGATGCAGCGAGAAAGTGGCGGTGCAAATCTCAATGATACGGGTCTCGGTGGAAGTGTTAGGGTTGCCTCTGATCTTGATGACTGTTGAAGCGGTGGCGATGATTGGTGAATCTCTACGCAAGGTTCTGCACTTGGACAAGTCAAACATCCGGCATGTAGTGAAGGCTAGGGTTTTTGAATTTTGCCGTGTCTGTGGCTTGTTGGAACACCCGTCAACTGGCTGTGCAGGGGTGCTGGATATGTCCGGTGTTCAGGTGGTGGTTAGAGTGCAGCAGGGAGGGACGAAGGAAGGGAGCTCTTCCAATTCTACCCCTAACCCTAACCCTAGTGGGGCTTTGGTGTGCGGCGAACTCGAGTCTGGTTCGAAGGGCGTGCCTTTGCGTCCGTGTGTGGGCTGCAGTGCAGCAGTGCCGCTACCAACGATCATCAATCCTTTTGCTCCCTCTGGCTTTGTGCTTTCTGTCCCAGGTGTTTCGGCAAAAGAGTTAACTAGGCAGTTAGCACATTATCGTCCTAAGGAGGTTCTCTCGGTGATTCCTCCTCCTCGCCGACGTCTTGTTGAGGAGCGTGTGGTGGCTAGTGGATTGAACTGGTCTGCAGATACCATGGAGCTGTTAACATACAATAAGAAGGCTAAGGTTGTAGTGCCTGTTCCCAAAACTACTTTTGTGGACTTAGGGTTTGTGCTGGAATTAGCGATCCCTCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
C1_2 Jacalin

Protein Analysis

341

Amino Acids

37.74

Weight (kDa)

9.76

Isoelectric Point (pI)

49.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021523)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010187
rosa_multiflora Rmu_sc0003264.1_g000030
rosa_samantha Rh4AG009700 Rh4CG010300
rosa_wichuraiana Rw4G000170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 871
AciI CCGC 4 cut(s) 335, 407, 660, 728
AclWI GGATC 2 cut(s) 131, 1009
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 1 cut(s) 494
AcyI GRCGYC 1 cut(s) 868
AfaI GTAC 1 cut(s) 289
AfeI AGCGCT 1 cut(s) 215
AfiI CCNNNNNNNGG 4 cut(s) 106, 533, 646, 707
AgsI TTSAA 4 cut(s) 232, 404, 494, 904
AjnI CCWGG 2 cut(s) 207, 781
AluBI AGCT 3 cut(s) 91, 612, 928
AluI AGCT 3 cut(s) 91, 612, 928
Alw21I GWGCWC 1 cut(s) 614
Alw26I GTCTC 2 cut(s) 194, 364
AlwI GGATC 2 cut(s) 131, 1009
Ama87I CYCGRG 1 cut(s) 668
Aor51HI AGCGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 283
ApeKI GCWGC 6 cut(s) 29, 88, 321, 586, 711, 719
ApoI RAATTY 1 cut(s) 494
ArsI GACNNNNNNTTYG 2 cut(s) 980, 1012
AspLEI GCGC 1 cut(s) 216
AsuHPI GGTGA 3 cut(s) 197, 434, 859
AsuII TTCGAA 1 cut(s) 680
AvaI CYCGRG 1 cut(s) 668
AxyI CCTNAGG 1 cut(s) 831
BanII GRGCYC 1 cut(s) 614
Bbv12I GWGCWC 1 cut(s) 614
BbvI GCAGC 6 cut(s) 16, 100, 333, 598, 698, 731
BceAI ACGGC 3 cut(s) 84, 270, 486
BcgI CGANNNNNNTGC 2 cut(s) 670, 704
BciT130I CCWGG 2 cut(s) 209, 783
BcoDI GTCTC 2 cut(s) 194, 364
BfaI CTAG 4 cut(s) 483, 642, 807, 894
BfmI CTRYAG 2 cut(s) 712, 912
BfoI RGCGCY 1 cut(s) 217
BglI GCCNNNNNGGC 1 cut(s) 161
BisI GCNGC 8 cut(s) 30, 89, 322, 587, 661, 712, 720, 728
BlsI GCNGC 8 cut(s) 31, 90, 323, 588, 662, 713, 721, 729
Bme1390I CCNGG 2 cut(s) 209, 783
BmeT110I CYCGRG 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 111
BmrFI CCNGG 2 cut(s) 209, 783
BmsI GCATC 1 cut(s) 308
BplI GAGNNNNNCTC 2 cut(s) 827, 859
Bpu10I CCTNAGC 2 cut(s) 165, 951
Bpu14I TTCGAA 1 cut(s) 680
BpuEI CTTGAG 1 cut(s) 244
BsaHI GRCGYC 1 cut(s) 868
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 3 cut(s) 159, 781, 921
BsaWI WCCGGW 1 cut(s) 560
Bsc4I CCNNNNNNNGG 4 cut(s) 106, 533, 646, 707
Bse1I ACTGG 2 cut(s) 538, 911
Bse21I CCTNAGG 1 cut(s) 831
BseBI CCWGG 2 cut(s) 209, 783
BseDI CCNNGG 3 cut(s) 159, 781, 921
BseGI GGATG 2 cut(s) 323, 462
BseLI CCNNNNNNNGG 4 cut(s) 106, 533, 646, 707
BseNI ACTGG 2 cut(s) 538, 911
BseRI GAGGAG 5 cut(s) 253, 256, 846, 849, 893
BseXI GCAGC 6 cut(s) 16, 100, 333, 598, 698, 731
BsgI GTGCAG 4 cut(s) 428, 561, 605, 738
BshFI GGCC 1 cut(s) 285
BsiHKAI GWGCWC 1 cut(s) 614
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 2 cut(s) 466, 561
BslFI GGGAC 2 cut(s) 610, 764
BslI CCNNNNNNNGG 4 cut(s) 106, 533, 646, 707
BsmAI GTCTC 2 cut(s) 194, 364
BsmBI CGTCTC 1 cut(s) 194
BsmFI GGGAC 2 cut(s) 610, 764
BsnI GGCC 1 cut(s) 285
Bso31I GGTCTC 1 cut(s) 364
BsoBI CYCGRG 1 cut(s) 668
Bsp119I TTCGAA 1 cut(s) 680
Bsp1286I GDGCHC 1 cut(s) 614
Bsp143I GATC 5 cut(s) 136, 254, 387, 738, 1014
Bsp19I CCATGG 2 cut(s) 159, 921
BspACI CCGC 4 cut(s) 335, 407, 660, 728
BspANI GGCC 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 111
BspMAI CTGCAG 2 cut(s) 716, 916
BspPI GGATC 2 cut(s) 131, 1009
BspQI GCTCTTC 1 cut(s) 619
BspT104I TTCGAA 1 cut(s) 680
BspTNI GGTCTC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 538, 911
BssECI CCNNGG 3 cut(s) 159, 781, 921
BssMI GATC 5 cut(s) 136, 254, 387, 738, 1014
BssNI GRCGYC 1 cut(s) 868
BssT1I CCWWGG 2 cut(s) 159, 921
Bst2UI CCWGG 2 cut(s) 209, 783
Bst4CI ACNGT 1 cut(s) 400
Bst6I CTCTTC 1 cut(s) 619
BstACI GRCGYC 1 cut(s) 868
BstBI TTCGAA 1 cut(s) 680
BstC8I GCNNGC 1 cut(s) 689
BstDEI CTNAG 4 cut(s) 165, 831, 951, 991
BstDSI CCRYGG 2 cut(s) 159, 921
BstF5I GGATG 2 cut(s) 323, 462
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 5 cut(s) 139, 257, 390, 741, 1017
BstMAI GTCTC 2 cut(s) 194, 364
BstMBI GATC 5 cut(s) 136, 254, 387, 738, 1014
BstMWI GCNNNNNNNGC 2 cut(s) 161, 184
BstNI CCWGG 2 cut(s) 209, 783
BstNSI RCATGY 1 cut(s) 473
BstSCI CCNGG 2 cut(s) 207, 781
BstSFI CTRYAG 2 cut(s) 712, 912
BstV1I GCAGC 6 cut(s) 16, 100, 333, 598, 698, 731
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 1 cut(s) 285
BtgI CCRYGG 2 cut(s) 159, 921
BtgZI GCGATG 1 cut(s) 428
BtsCI GGATG 2 cut(s) 323, 462
BtsI GCAGTG 2 cut(s) 721, 729
BtsIMutI CAGTG 2 cut(s) 721, 729
Cac8I GCNNGC 1 cut(s) 689
CfoI GCGC 1 cut(s) 216
CseI GACGC 2 cut(s) 176, 686
Csp6I GTAC 1 cut(s) 288
CviAII CATG 6 cut(s) 25, 160, 258, 292, 470, 922
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 4 cut(s) 165, 831, 951, 991
DpnI GATC 5 cut(s) 138, 256, 389, 740, 1016
DpnII GATC 5 cut(s) 136, 254, 387, 738, 1014
EaeI YGGCCR 1 cut(s) 283
Eam1104I CTCTTC 1 cut(s) 619
EarI CTCTTC 1 cut(s) 619
Ecl136II GAGCTC 1 cut(s) 612
Eco130I CCWWGG 2 cut(s) 159, 921
Eco24I GRGCYC 1 cut(s) 614
Eco31I GGTCTC 1 cut(s) 364
Eco47III AGCGCT 1 cut(s) 215
Eco53kI GAGCTC 1 cut(s) 612
Eco81I CCTNAGG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 668
EcoICRI GAGCTC 1 cut(s) 612
EcoRII CCWGG 2 cut(s) 207, 781
EcoT14I CCWWGG 2 cut(s) 159, 921
EcoT38I GRGCYC 1 cut(s) 614
ErhI CCWWGG 2 cut(s) 159, 921
Esp3I CGTCTC 1 cut(s) 194
FaeI CATG 6 cut(s) 28, 163, 261, 295, 473, 925
FaqI GGGAC 2 cut(s) 610, 764
FatI CATG 6 cut(s) 24, 159, 257, 291, 469, 921
FauNDI CATATG 1 cut(s) 95
Fnu4HI GCNGC 8 cut(s) 30, 89, 322, 587, 661, 712, 720, 728
FokI GGATG 2 cut(s) 330, 449
FriOI GRGCYC 1 cut(s) 614
Fsp4HI GCNGC 8 cut(s) 30, 89, 322, 587, 661, 712, 720, 728
FspBI CTAG 4 cut(s) 483, 642, 807, 894
GlaI GCGC 1 cut(s) 215
GluI GCNGC 8 cut(s) 30, 89, 322, 587, 661, 712, 720, 728
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 1 cut(s) 285
HapII CCGG 2 cut(s) 466, 561
HgaI GACGC 2 cut(s) 176, 686
HhaI GCGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 868
Hin1II CATG 6 cut(s) 28, 163, 261, 295, 473, 925
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HincII GTYRAC 3 cut(s) 531, 804, 933
HindII GTYRAC 3 cut(s) 531, 804, 933
HinfI GANTC 7 cut(s) 19, 61, 202, 228, 425, 671, 850
HpaI GTTAAC 2 cut(s) 804, 933
HpaII CCGG 2 cut(s) 466, 561
HphI GGTGA 3 cut(s) 197, 434, 859
Hpy166II GTNNAC 5 cut(s) 297, 531, 804, 933, 988
Hpy188I TCNGA 2 cut(s) 136, 387
Hpy188III TCNNGA 5 cut(s) 16, 140, 199, 223, 391
Hpy8I GTNNAC 5 cut(s) 297, 531, 804, 933, 988
Hpy99I CGWCG 1 cut(s) 870
HpyAV CCTTC 9 cut(s) 4, 68, 157, 240, 472, 595, 599, 676, 940
HpyCH4III ACNGT 1 cut(s) 400
HpyCH4IV ACGT 2 cut(s) 299, 868
HpyCH4V TGCA 8 cut(s) 321, 340, 445, 542, 586, 714, 719, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 161, 184
HpyF3I CTNAG 4 cut(s) 165, 831, 951, 991
HpySE526I ACGT 2 cut(s) 299, 868
Hsp92I GRCGYC 1 cut(s) 868
Hsp92II CATG 6 cut(s) 28, 163, 261, 295, 473, 925
HspAI GCGC 1 cut(s) 214
KspAI GTTAAC 2 cut(s) 804, 933
Kzo9I GATC 5 cut(s) 136, 254, 387, 738, 1014
LguI GCTCTTC 1 cut(s) 619
LmnI GCTCC 6 cut(s) 115, 211, 609, 760, 880, 925
Lsp1109I GCAGC 6 cut(s) 16, 100, 333, 598, 698, 731
LweI GCATC 1 cut(s) 308
MaeI CTAG 4 cut(s) 483, 642, 807, 894
MaeII ACGT 2 cut(s) 299, 868
MalI GATC 5 cut(s) 138, 256, 389, 740, 1016
MboI GATC 5 cut(s) 136, 254, 387, 738, 1014
MboII GAAGA 1 cut(s) 606
MhlI GDGCHC 1 cut(s) 614
MluCI AATT 3 cut(s) 494, 619, 1007
MlyI GAGTC 3 cut(s) 13, 70, 680
MmeI TCCRAC 1 cut(s) 498
MseI TTAA 2 cut(s) 803, 932
MspI CCGG 2 cut(s) 466, 561
MspR9I CCNGG 2 cut(s) 209, 783
MvaI CCWGG 2 cut(s) 209, 783
MwoI GCNNNNNNNGC 2 cut(s) 161, 184
NcoI CCATGG 2 cut(s) 159, 921
NdeI CATATG 1 cut(s) 95
NdeII GATC 5 cut(s) 136, 254, 387, 738, 1014
NlaIII CATG 6 cut(s) 28, 163, 261, 295, 473, 925
NlaIV GGNNCC 1 cut(s) 111
NspI RCATGY 1 cut(s) 473
NspV TTCGAA 1 cut(s) 680
PaeR7I CTCGAG 1 cut(s) 668
PciSI GCTCTTC 1 cut(s) 619
PfeI GAWTC 4 cut(s) 202, 228, 425, 850
PkrI GCNGC 8 cut(s) 31, 90, 323, 588, 662, 713, 721, 729
PleI GAGTC 3 cut(s) 13, 69, 679
PpsI GAGTC 3 cut(s) 13, 69, 679
Psp124BI GAGCTC 1 cut(s) 614
Psp6I CCWGG 2 cut(s) 207, 781
PspGI CCWGG 2 cut(s) 207, 781
PspN4I GGNNCC 1 cut(s) 111
PspXI VCTCGAGB 1 cut(s) 668
PsrI GAACNNNNNNTAC 2 cut(s) 951, 983
PstI CTGCAG 2 cut(s) 716, 916
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SacI GAGCTC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 619
SaqAI TTAA 2 cut(s) 803, 932
SatI GCNGC 8 cut(s) 30, 89, 322, 587, 661, 712, 720, 728
Sau3AI GATC 5 cut(s) 136, 254, 387, 738, 1014
SchI GAGTC 3 cut(s) 13, 70, 680
ScrFI CCNGG 2 cut(s) 209, 783
SduI GDGCHC 1 cut(s) 614
SfaNI GCATC 1 cut(s) 308
SfcI CTRYAG 2 cut(s) 712, 912
Sfr274I CTCGAG 1 cut(s) 668
SfuI TTCGAA 1 cut(s) 680
SlaI CTCGAG 1 cut(s) 668
SmlI CTYRAG 2 cut(s) 223, 668
SmoI CTYRAG 2 cut(s) 223, 668
Sse9I AATT 3 cut(s) 494, 619, 1007
SsiI CCGC 4 cut(s) 335, 407, 660, 728
SspMI CTAG 4 cut(s) 483, 642, 807, 894
SstI GAGCTC 1 cut(s) 614
StyD4I CCNGG 2 cut(s) 207, 781
StyI CCWWGG 2 cut(s) 159, 921
TaaI ACNGT 1 cut(s) 400
TaiI ACGT 2 cut(s) 302, 871
TaqI TCGA 2 cut(s) 669, 680
TasI AATT 3 cut(s) 494, 619, 1007
TauI GCSGC 2 cut(s) 663, 730
TfiI GAWTC 4 cut(s) 202, 228, 425, 850
Tru1I TTAA 2 cut(s) 803, 932
Tru9I TTAA 2 cut(s) 803, 932
TscAI CASTG 2 cut(s) 721, 729
TseI GCWGC 6 cut(s) 29, 88, 321, 586, 711, 719
TspDTI ATGAA 3 cut(s) 87, 139, 208
TspGWI ACGGA 1 cut(s) 690
TspRI CASTG 2 cut(s) 721, 729
XapI RAATTY 1 cut(s) 494
XceI RCATGY 1 cut(s) 473
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XhoI CTCGAG 1 cut(s) 668
XspI CTAG 4 cut(s) 483, 642, 807, 894
ZraI GACGTC 1 cut(s) 869
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.