RLG00000010319

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0020642
Physical Location & Seq
Forward (+)
639962 .. 645740
5779 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010319

Sequence Viewer

Length: 969 bp
ATGATTTTAATTTTGACTGCAGAGGGCTGTAGCACGTGCCAAGCACGAGCCATGTTGGGTTGGCTATTGCCTATATATTTTGCCGCGCGCGTTCACATATATCTCGATCAGTTAGTTAACCTTCCCACCAACGTTGTGGCCGCAAAGCCTCAGTCTCCTTCATGGGAGGAGGAAGAGGAAGAGAGCGAAGAAGAAGCAGACAAAGCACCCGAGCCCGCGGAAGACGACCTTGACTGTGGAAAGCCACTCCCGAGAAGAAGCCCGGCCAACCGAATCGAAGAAGCCGGAATCCGCGGCAAAGGCCTCACTCAGTTTCAGACTCGCCGGCGGCGACAGGGGCGGATTCAGGCTGCGTCGGTTGGGCTTCTTCTCGGAGTGGCTGTTCACAGTCGAGGCTCGGAGGAAGAGGAAGAGAGCGATGAAGAAGAAGCTAGGGTACATTATGATCCAAAATGCCTGAATAACAACCTTTTGTCCGGAAGAGTTCCGGCTGCTCTTGTTAGAAGGCTTCTGAACGGTGTCAGCTTTAACAACAACAGTGGCTTGGCAGGTGTGCCCTCATGGCAAAGACGCCACCCTGCTGGGGAGGTGATTGCAATAACATTTGGTGTCTTGGCGGCAGTATTGCTCACAAGTTCTGCAGTCTATTATTACAAAAAGAAGAAGAATCATACATGGCAACCATATGTCTTAGACGGGGCAGAAGGAACGGGTGAGTTAATGAATTTTCAACCACCTGTCTTAGAAGGGGCAGAAGGGCCTGGTGAGGTAATGGATTTTCAACATGTCTTAGACGGGGTAGAAGGACCGGGTGAGGTAACCGATTTTGATGATGATCCGCTGCTCAAGCGAAAGAGAGAGGAGGAGGTCGTAGGCGGGCCTTCAAAAAAGGCGCGAACTAGGAAAACTTCACAGGTTCCTAGGAGGCATCCCCTCCCAAGAACCTGCAAGAATAGGGCTACCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

35.59

Weight (kDa)

5.78

Isoelectric Point (pI)

64.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020642)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010319
rosa_rugosa Rorug06G0396300
rosa_samantha Rh6AG513600 Rh6BG526300 Rh6CG531300 Rh6DG515700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 539
Acc36I ACCTGC 2 cut(s) 539, 953
AccII CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
AccIII TCCGGA 1 cut(s) 476
AclI AACGTT 1 cut(s) 132
AclWI GGATC 2 cut(s) 440, 830
AcoI YGGCCR 2 cut(s) 138, 264
AcsI RAATTY 1 cut(s) 724
AcvI CACGTG 1 cut(s) 36
AcyI GRCGYC 1 cut(s) 571
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 1 cut(s) 583
AflIII ACRYGT 1 cut(s) 784
AgsI TTSAA 3 cut(s) 731, 782, 885
AjnI CCWGG 1 cut(s) 760
AloI GAACNNNNNNTCC 2 cut(s) 366, 398
AluBI AGCT 2 cut(s) 431, 525
AluI AGCT 2 cut(s) 431, 525
Alw26I GTCTC 1 cut(s) 159
AlwI GGATC 2 cut(s) 440, 830
Ama87I CYCGRG 2 cut(s) 209, 250
Aor13HI TCCGGA 1 cut(s) 476
AoxI GGCC 5 cut(s) 138, 264, 301, 758, 878
ApeKI GCWGC 3 cut(s) 350, 491, 841
ApoI RAATTY 1 cut(s) 724
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspA2I CCTAGG 1 cut(s) 920
AspLEI GCGC 3 cut(s) 88, 90, 895
AspS9I GGNCC 3 cut(s) 758, 806, 878
AsuC2I CCSGG 2 cut(s) 263, 810
AsuHPI GGTGA 4 cut(s) 601, 725, 776, 824
AvaI CYCGRG 2 cut(s) 209, 250
AvaII GGWCC 1 cut(s) 806
AvrII CCTAGG 1 cut(s) 920
BaeGI GKGCMC 1 cut(s) 558
BanII GRGCYC 1 cut(s) 216
BarI GAAGNNNNNNTAC 2 cut(s) 420, 452
BauI CACGAG 1 cut(s) 45
BbrPI CACGTG 1 cut(s) 36
BbsI GAAGAC 1 cut(s) 228
BbvI GCAGC 3 cut(s) 337, 478, 828
BciT130I CCWGG 1 cut(s) 762
BcnI CCSGG 2 cut(s) 263, 810
BcoDI GTCTC 1 cut(s) 159
BfaI CTAG 3 cut(s) 432, 900, 921
BfmI CTRYAG 3 cut(s) 18, 28, 639
BfuAI ACCTGC 2 cut(s) 539, 953
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 8 cut(s) 84, 141, 295, 329, 351, 492, 618, 842
BlnI CCTAGG 1 cut(s) 920
BlsI GCNGC 8 cut(s) 85, 142, 296, 330, 352, 493, 619, 843
Bme1390I CCNGG 3 cut(s) 263, 762, 810
Bme18I GGWCC 1 cut(s) 806
BmeT110I CYCGRG 2 cut(s) 209, 250
BmgT120I GGNCC 3 cut(s) 758, 806, 878
BmiI GGNNCC 1 cut(s) 918
BmrFI CCNGG 3 cut(s) 263, 762, 810
BmsI GCATC 1 cut(s) 937
BpiI GAAGAC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 2 cut(s) 263, 810
BsaAI YACGTR 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 571
BsaJI CCNNGG 3 cut(s) 216, 292, 920
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 2 cut(s) 366, 396
Bsc4I CCNNNNNNNGG 1 cut(s) 583
Bse118I RCCGGY 1 cut(s) 324
Bse8I GATNNNNATC 1 cut(s) 834
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 762
BseDI CCNNGG 3 cut(s) 216, 292, 920
BseGI GGATG 1 cut(s) 928
BseJI GATNNNNATC 1 cut(s) 834
BseLI CCNNNNNNNGG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 164, 323
BsePI GCGCGC 1 cut(s) 86
BseRI GAGGAG 3 cut(s) 182, 875, 878
BseSI GKGCMC 1 cut(s) 558
BseXI GCAGC 3 cut(s) 337, 478, 828
BseYI CCCAGC 1 cut(s) 581
Bsh1236I CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
BshFI GGCC 5 cut(s) 140, 266, 303, 760, 880
BsiHKCI CYCGRG 2 cut(s) 209, 250
BsiSI CCGG 6 cut(s) 263, 285, 325, 477, 488, 809
BslI CCNNNNNNNGG 1 cut(s) 583
BsmAI GTCTC 1 cut(s) 159
BsnI GGCC 5 cut(s) 140, 266, 303, 760, 880
BsoBI CYCGRG 2 cut(s) 209, 250
Bsp1286I GDGCHC 2 cut(s) 216, 558
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 3 cut(s) 106, 445, 835
BspANI GGCC 5 cut(s) 140, 266, 303, 760, 880
BspCNI CTCAG 2 cut(s) 163, 322
BspEI TCCGGA 1 cut(s) 476
BspFNI CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
BspLI GGNNCC 1 cut(s) 918
BspMAI CTGCAG 2 cut(s) 22, 643
BspMI ACCTGC 2 cut(s) 539, 953
BspPI GGATC 2 cut(s) 440, 830
BsrFI RCCGGY 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 324
BssECI CCNNGG 3 cut(s) 216, 292, 920
BssHII GCGCGC 1 cut(s) 86
BssMI GATC 3 cut(s) 106, 445, 835
BssNI GRCGYC 1 cut(s) 571
BssSI CACGAG 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 920
Bst2BI CACGAG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 762
Bst4CI ACNGT 4 cut(s) 236, 389, 518, 539
Bst6I CTCTTC 5 cut(s) 168, 174, 399, 405, 475
BstACI GRCGYC 1 cut(s) 571
BstBAI YACGTR 1 cut(s) 36
BstC8I GCNNGC 4 cut(s) 88, 216, 326, 878
BstDEI CTNAG 5 cut(s) 150, 309, 691, 742, 790
BstDSI CCRYGG 2 cut(s) 216, 292
BstEII GGTNACC 1 cut(s) 817
BstF5I GGATG 1 cut(s) 928
BstFNI CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
BstHHI GCGC 3 cut(s) 88, 90, 895
BstKTI GATC 3 cut(s) 109, 448, 838
BstMAI GTCTC 1 cut(s) 159
BstMBI GATC 3 cut(s) 106, 445, 835
BstMWI GCNNNNNNNGC 5 cut(s) 203, 300, 337, 562, 847
BstNI CCWGG 1 cut(s) 762
BstNSI RCATGY 1 cut(s) 788
BstPI GGTNACC 1 cut(s) 817
BstSCI CCNGG 3 cut(s) 261, 760, 808
BstSFI CTRYAG 3 cut(s) 18, 28, 639
BstSLI GKGCMC 1 cut(s) 558
BstUI CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
BstV1I GCAGC 3 cut(s) 337, 478, 828
BstV2I GAAGAC 1 cut(s) 228
BstXI CCANNNNNNTGG 2 cut(s) 136, 581
BsuRI GGCC 5 cut(s) 140, 266, 303, 760, 880
BtgI CCRYGG 2 cut(s) 216, 292
BtgZI GCGATG 1 cut(s) 432
BtsCI GGATG 1 cut(s) 928
BtsIMutI CAGTG 1 cut(s) 544
BveI ACCTGC 2 cut(s) 539, 953
Cac8I GCNNGC 4 cut(s) 88, 216, 326, 878
CfoI GCGC 3 cut(s) 88, 90, 895
Cfr10I RCCGGY 1 cut(s) 324
Cfr13I GGNCC 3 cut(s) 758, 806, 878
Cfr42I CCGCGG 2 cut(s) 219, 295
CseI GACGC 2 cut(s) 342, 579
Csp6I GTAC 1 cut(s) 437
CspCI CAANNNNNGTGG 4 cut(s) 115, 150, 520, 555
CviAII CATG 5 cut(s) 52, 162, 561, 675, 785
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 5 cut(s) 150, 309, 691, 742, 790
DpnI GATC 3 cut(s) 108, 447, 837
DpnII GATC 3 cut(s) 106, 445, 835
EaeI YGGCCR 2 cut(s) 138, 264
Eam1104I CTCTTC 5 cut(s) 168, 174, 399, 405, 475
EarI CTCTTC 5 cut(s) 168, 174, 399, 405, 475
EciI GGCGGA 1 cut(s) 355
Eco130I CCWWGG 1 cut(s) 920
Eco147I AGGCCT 1 cut(s) 303
Eco24I GRGCYC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 806
Eco72I CACGTG 1 cut(s) 36
Eco88I CYCGRG 2 cut(s) 209, 250
Eco91I GGTNACC 1 cut(s) 817
EcoO109I RGGNCCY 1 cut(s) 758
EcoO65I GGTNACC 1 cut(s) 817
EcoRII CCWGG 1 cut(s) 760
EcoT14I CCWWGG 1 cut(s) 920
EcoT38I GRGCYC 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 920
FaeI CATG 5 cut(s) 55, 165, 564, 678, 788
FalI AAGNNNNNCTT 2 cut(s) 213, 245
FatI CATG 5 cut(s) 51, 161, 560, 674, 784
FauI CCCGC 2 cut(s) 223, 869
FauNDI CATATG 1 cut(s) 685
Fnu4HI GCNGC 8 cut(s) 84, 141, 295, 329, 351, 492, 618, 842
FokI GGATG 1 cut(s) 915
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 8 cut(s) 84, 141, 295, 329, 351, 492, 618, 842
FspBI CTAG 3 cut(s) 432, 900, 921
GlaI GCGC 3 cut(s) 87, 89, 894
GluI GCNGC 8 cut(s) 84, 141, 295, 329, 351, 492, 618, 842
GsaI CCCAGC 1 cut(s) 585
HaeIII GGCC 5 cut(s) 140, 266, 303, 760, 880
HapII CCGG 6 cut(s) 263, 285, 325, 477, 488, 809
HgaI GACGC 2 cut(s) 342, 579
HhaI GCGC 3 cut(s) 88, 90, 895
Hin1I GRCGYC 1 cut(s) 571
Hin1II CATG 5 cut(s) 55, 165, 564, 678, 788
Hin6I GCGC 3 cut(s) 86, 88, 893
HinP1I GCGC 3 cut(s) 86, 88, 893
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HinfI GANTC 5 cut(s) 273, 288, 319, 343, 667
HpaI GTTAAC 1 cut(s) 118
HpaII CCGG 6 cut(s) 263, 285, 325, 477, 488, 809
HphI GGTGA 4 cut(s) 601, 725, 776, 824
Hpy166II GTNNAC 3 cut(s) 94, 118, 385
Hpy188I TCNGA 4 cut(s) 318, 374, 400, 513
Hpy188III TCNNGA 3 cut(s) 104, 250, 477
Hpy8I GTNNAC 3 cut(s) 94, 118, 385
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 8 cut(s) 131, 168, 498, 698, 740, 749, 797, 891
HpyCH4III ACNGT 4 cut(s) 236, 389, 518, 539
HpyCH4IV ACGT 2 cut(s) 35, 132
HpyCH4V TGCA 4 cut(s) 20, 596, 641, 948
HpyF10VI GCNNNNNNNGC 5 cut(s) 203, 300, 337, 562, 847
HpyF3I CTNAG 5 cut(s) 150, 309, 691, 742, 790
HpySE526I ACGT 2 cut(s) 35, 132
Hsp92I GRCGYC 1 cut(s) 571
Hsp92II CATG 5 cut(s) 55, 165, 564, 678, 788
HspAI GCGC 3 cut(s) 86, 88, 893
Kpn2I TCCGGA 1 cut(s) 476
KroI GCCGGC 1 cut(s) 324
KroNI GCCGGC 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 118
KspI CCGCGG 2 cut(s) 219, 295
Kzo9I GATC 3 cut(s) 106, 445, 835
Lsp1109I GCAGC 3 cut(s) 337, 478, 828
LweI GCATC 1 cut(s) 937
MaeI CTAG 3 cut(s) 432, 900, 921
MaeII ACGT 2 cut(s) 35, 132
MaeIII GTNAC 1 cut(s) 817
MalI GATC 3 cut(s) 108, 447, 837
MauBI CGCGCGCG 1 cut(s) 86
MboI GATC 3 cut(s) 106, 445, 835
MhlI GDGCHC 2 cut(s) 216, 558
MluCI AATT 2 cut(s) 9, 724
MlyI GAGTC 1 cut(s) 313
MreI CGCCGGCG 1 cut(s) 324
MroI TCCGGA 1 cut(s) 476
MroNI GCCGGC 1 cut(s) 324
MseI TTAA 4 cut(s) 8, 117, 528, 719
MspA1I CMGCKG 3 cut(s) 218, 294, 841
MspI CCGG 6 cut(s) 263, 285, 325, 477, 488, 809
MspR9I CCNGG 3 cut(s) 263, 762, 810
MvaI CCWGG 1 cut(s) 762
MvnI CGCG 6 cut(s) 86, 88, 90, 218, 294, 895
MwoI GCNNNNNNNGC 5 cut(s) 203, 300, 337, 562, 847
NaeI GCCGGC 1 cut(s) 326
NciI CCSGG 2 cut(s) 263, 810
NdeI CATATG 1 cut(s) 685
NdeII GATC 3 cut(s) 106, 445, 835
NgoMIV GCCGGC 1 cut(s) 324
NlaIII CATG 5 cut(s) 55, 165, 564, 678, 788
NlaIV GGNNCC 1 cut(s) 918
NspI RCATGY 1 cut(s) 788
PaqCI CACCTGC 1 cut(s) 539
PauI GCGCGC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 303
PciI ACATGT 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 328
PdiI GCCGGC 1 cut(s) 326
PfeI GAWTC 4 cut(s) 273, 288, 343, 667
PkrI GCNGC 8 cut(s) 85, 142, 296, 330, 352, 493, 619, 843
PleI GAGTC 1 cut(s) 313
PmaCI CACGTG 1 cut(s) 36
PmlI CACGTG 1 cut(s) 36
PpsI GAGTC 1 cut(s) 313
Ppu21I YACGTR 1 cut(s) 36
PscI ACATGT 1 cut(s) 784
Psp1406I AACGTT 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 760
PspCI CACGTG 1 cut(s) 36
PspEI GGTNACC 1 cut(s) 817
PspFI CCCAGC 1 cut(s) 581
PspGI CCWGG 1 cut(s) 760
PspN4I GGNNCC 1 cut(s) 918
PspPI GGNCC 3 cut(s) 758, 806, 878
PstI CTGCAG 2 cut(s) 22, 643
PteI GCGCGC 1 cut(s) 86
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SacII CCGCGG 2 cut(s) 219, 295
SaqAI TTAA 4 cut(s) 8, 117, 528, 719
SatI GCNGC 8 cut(s) 84, 141, 295, 329, 351, 492, 618, 842
Sau3AI GATC 3 cut(s) 106, 445, 835
Sau96I GGNCC 3 cut(s) 758, 806, 878
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 3 cut(s) 263, 762, 810
SduI GDGCHC 2 cut(s) 216, 558
SfaNI GCATC 1 cut(s) 937
SfcI CTRYAG 3 cut(s) 18, 28, 639
Sfr303I CCGCGG 2 cut(s) 219, 295
SgrAI CRCCGGYG 1 cut(s) 324
SgrBI CCGCGG 2 cut(s) 219, 295
SinI GGWCC 1 cut(s) 806
SmlI CTYRAG 1 cut(s) 845
SmoI CTYRAG 1 cut(s) 845
Sse9I AATT 2 cut(s) 9, 724
SseBI AGGCCT 1 cut(s) 303
SspMI CTAG 3 cut(s) 432, 900, 921
StuI AGGCCT 1 cut(s) 303
StyD4I CCNGG 3 cut(s) 261, 760, 808
StyI CCWWGG 1 cut(s) 920
TaaI ACNGT 4 cut(s) 236, 389, 518, 539
TaiI ACGT 2 cut(s) 38, 135
TaqI TCGA 3 cut(s) 105, 276, 391
TasI AATT 2 cut(s) 9, 724
TauI GCSGC 5 cut(s) 86, 143, 297, 331, 620
TfiI GAWTC 4 cut(s) 273, 288, 343, 667
Tru1I TTAA 4 cut(s) 8, 117, 528, 719
Tru9I TTAA 4 cut(s) 8, 117, 528, 719
TscAI CASTG 1 cut(s) 544
TseI GCWGC 3 cut(s) 350, 491, 841
TspDTI ATGAA 3 cut(s) 150, 435, 737
TspRI CASTG 1 cut(s) 544
VpaK11BI GGWCC 1 cut(s) 806
XapI RAATTY 1 cut(s) 724
XceI RCATGY 1 cut(s) 788
XcmI CCANNNNNNNNNTGG 1 cut(s) 133
XmaJI CCTAGG 1 cut(s) 920
XspI CTAG 3 cut(s) 432, 900, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.