Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020642

Physical Location & Seq

Genomic Coordinates Reverse (-)

66767377 .. 66771630

Gene Structure 4254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG515700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGACATTGATTGCAACAGAAACTACACAATGTGGTTTCACTTTGCTGAACTCGATCTAGCAATGTCTGTAGATCAGAGGTTAACGCATATGTTTTTGAAAAATGCAGTTAACGCTTTGAAGATACTGAAGCATGGATTAGAGCTTAGCAGATGGTTTGGTTGGAATGGGGACCCTTGTGTTCCCCAACAACACCAGTGGATGGGAATAAACTGTCATTATGATAGAAACAAGAGCAAATGGGTTGTTGACGAGCTGGCACTCAATAACCAAGGTCTGAAGGGATTTTTGTACAATGACATTTTAAAATTGCGTCGTTTAAAGAGCATGGATCTTTCATACAATTCCTTCAACGGATCAATCCCTGAAACGCTTGGACAATTGTCCTCGCTAAGAAGACTATGCCTGAATAGCAACCTTTTGTCCGGAAGGGTTCCGGCTGCTCTTGTTGGAAGGCTTCTGAACGGTGTCAGATATAAATTTTGCATGCATGAGGTTACTAACTCTGAGTTGGGGTTTGCTTCCAGCTTTAACAACAACAGTGGCTTGTCAGGTGTGCCCTCATGGCAAAGACGCCACCCTGCTGAGGAGGTGATTGCAATAACATTTGGTGTCTTGGCGGCAGTATTGCTCACAAGTTCTGCAGTCTATTATTACAAAAAGAAGAAGAATCATACATGGCAACCATATGTCTTAGACGGGGCAGAAGGACTGGGTGAGCGAAAGAGAGAGGAGGATGTCGTAGGCGGGCCTTCAAAAAAGGCGCGAACTAGGAAAACTTCACAGGTTCCTAGGAGGCGTCCCCTCCCAAGAACCTGCAAGAATAGGGCTACCCTGACAAACAAAGGCATTGAAAGTAAGAGATTTGATGAGACTACACAATCATATCTTGGTCGAGTAGTTAAAGCTGTGTTTTTGTTAAACCAATCTCCAGCTACTGATCCGGAAGAAGTCAGTGAAAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_4 LRR_8 Malectin_like

Protein Analysis

321

Amino Acids

36.48

Weight (kDa)

9.62

Isoelectric Point (pI)

50.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020642)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000010319
rosa_rugosa	Rorug06G0396300
rosa_samantha	Rh6AG513600 Rh6BG526300 Rh6CG531300 Rh6DG515700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	824
AccB7I	CCANNNNNTGG	1 cut(s)	202
AccII	CGCG	1 cut(s)	766
AccIII	TCCGGA	2 cut(s)	425, 943
AciI	CCGC	2 cut(s)	620, 747
AclWI	GGATC	3 cut(s)	339, 364, 935
AcsI	RAATTY	1 cut(s)	479
AcuI	CTGAAG	2 cut(s)	149, 299
AcyI	GRCGYC	2 cut(s)	574, 799
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	202, 586
AgsI	TTSAA	5 cut(s)	100, 121, 352, 756, 854
AluBI	AGCT	6 cut(s)	145, 256, 528, 908, 935, 963
AluI	AGCT	6 cut(s)	145, 256, 528, 908, 935, 963
Alw26I	GTCTC	1 cut(s)	866
AlwI	GGATC	3 cut(s)	339, 364, 935
AlwNI	CAGNNNCTG	1 cut(s)	938
Aor13HI	TCCGGA	2 cut(s)	425, 943
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	1 cut(s)	440
ApoI	RAATTY	1 cut(s)	479
AspA2I	CCTAGG	1 cut(s)	791
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	2 cut(s)	172, 749
AsuHPI	GGTGA	2 cut(s)	604, 728
AvaII	GGWCC	1 cut(s)	172
AvrII	CCTAGG	1 cut(s)	791
BaeGI	GKGCMC	1 cut(s)	561
BbsI	GAAGAC	1 cut(s)	403
BbvCI	CCTCAGC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	427
BccI	CCATC	2 cut(s)	147, 196
BcoDI	GTCTC	1 cut(s)	866
BfaI	CTAG	4 cut(s)	59, 771, 792, 964
BfmI	CTRYAG	2 cut(s)	69, 642
BfuAI	ACCTGC	1 cut(s)	824
BglI	GCCNNNNNGGC	1 cut(s)	565
BisI	GCNGC	2 cut(s)	441, 621
BlnI	CCTAGG	1 cut(s)	791
BlpI	GCTNAGC	1 cut(s)	146
BlsI	GCNGC	2 cut(s)	442, 622
Bme18I	GGWCC	1 cut(s)	172
BmgT120I	GGNCC	2 cut(s)	172, 749
BmiI	GGNNCC	4 cut(s)	173, 174, 435, 789
BmrI	ACTGGG	1 cut(s)	722
BmuI	ACTGGG	1 cut(s)	722
BoxI	GACNNNNGTC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	403
BpmI	CTGGAG	1 cut(s)	915
Bpu10I	CCTNAGC	1 cut(s)	585
Bpu1102I	GCTNAGC	1 cut(s)	146
BsaHI	GRCGYC	2 cut(s)	574, 799
BsaJI	CCNNGG	2 cut(s)	271, 791
BsaWI	WCCGGW	2 cut(s)	425, 943
Bsc4I	CCNNNNNNNGG	2 cut(s)	202, 586
Bse1I	ACTGG	2 cut(s)	196, 717
Bse3DI	GCAATG	1 cut(s)	69
BseAI	TCCGGA	2 cut(s)	425, 943
BseDI	CCNNGG	2 cut(s)	271, 791
BseGI	GGATG	2 cut(s)	207, 742
BseLI	CCNNNNNNNGG	2 cut(s)	202, 586
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	498, 576
BseNI	ACTGG	2 cut(s)	196, 717
BseRI	GAGGAG	2 cut(s)	602, 746
BseSI	GKGCMC	1 cut(s)	561
BseXI	GCAGC	1 cut(s)	427
Bsh1236I	CGCG	1 cut(s)	766
BshFI	GGCC	1 cut(s)	751
BsiSI	CCGG	3 cut(s)	426, 437, 944
BslFI	GGGAC	2 cut(s)	185, 786
BslI	CCNNNNNNNGG	2 cut(s)	202, 586
BsmAI	GTCTC	1 cut(s)	866
BsmFI	GGGAC	2 cut(s)	185, 786
BsnI	GGCC	1 cut(s)	751
Bsp1286I	GDGCHC	1 cut(s)	561
Bsp13I	TCCGGA	2 cut(s)	425, 943
Bsp1407I	TGTACA	1 cut(s)	291
Bsp143I	GATC	5 cut(s)	55, 73, 331, 356, 940
Bsp1720I	GCTNAGC	1 cut(s)	146
BspACI	CCGC	2 cut(s)	620, 747
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	2 cut(s)	499, 577
BspEI	TCCGGA	2 cut(s)	425, 943
BspFNI	CGCG	1 cut(s)	766
BspLI	GGNNCC	4 cut(s)	173, 174, 435, 789
BspMAI	CTGCAG	1 cut(s)	646
BspMI	ACCTGC	1 cut(s)	824
BspPI	GGATC	3 cut(s)	339, 364, 935
BsrDI	GCAATG	1 cut(s)	69
BsrGI	TGTACA	1 cut(s)	291
BsrI	ACTGG	2 cut(s)	196, 717
BssECI	CCNNGG	2 cut(s)	271, 791
BssMI	GATC	5 cut(s)	55, 73, 331, 356, 940
BssNI	GRCGYC	2 cut(s)	574, 799
BssT1I	CCWWGG	2 cut(s)	271, 791
Bst4CI	ACNGT	3 cut(s)	215, 467, 542
BstACI	GRCGYC	2 cut(s)	574, 799
BstAUI	TGTACA	1 cut(s)	291
BstC8I	GCNNGC	3 cut(s)	258, 488, 749
BstDEI	CTNAG	5 cut(s)	146, 392, 507, 585, 694
BstF5I	GGATG	2 cut(s)	207, 742
BstFNI	CGCG	1 cut(s)	766
BstHHI	GCGC	1 cut(s)	766
BstKTI	GATC	5 cut(s)	58, 76, 334, 359, 943
BstMAI	GTCTC	1 cut(s)	866
BstMBI	GATC	5 cut(s)	55, 73, 331, 356, 940
BstMWI	GCNNNNNNNGC	3 cut(s)	113, 411, 565
BstNSI	RCATGY	1 cut(s)	490
BstPAI	GACNNNNGTC	1 cut(s)	382
BstSFI	CTRYAG	2 cut(s)	69, 642
BstSLI	GKGCMC	1 cut(s)	561
BstUI	CGCG	1 cut(s)	766
BstV1I	GCAGC	1 cut(s)	427
BstV2I	GAAGAC	1 cut(s)	403
BstX2I	RGATCY	1 cut(s)	331
BstYI	RGATCY	1 cut(s)	331
BsuRI	GGCC	1 cut(s)	751
BtsCI	GGATG	2 cut(s)	207, 742
BtsIMutI	CAGTG	3 cut(s)	203, 547, 961
BveI	ACCTGC	1 cut(s)	824
Cac8I	GCNNGC	3 cut(s)	258, 488, 749
CaiI	CAGNNNCTG	1 cut(s)	938
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	2 cut(s)	172, 749
CseI	GACGC	3 cut(s)	302, 582, 788
Csp6I	GTAC	1 cut(s)	292
CspCI	CAANNNNNGTGG	4 cut(s)	179, 214, 523, 558
CviAII	CATG	6 cut(s)	134, 328, 487, 491, 564, 678
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	5 cut(s)	146, 392, 507, 585, 694
DpnI	GATC	5 cut(s)	57, 75, 333, 358, 942
DpnII	GATC	5 cut(s)	55, 73, 331, 356, 940
DraI	TTTAAA	2 cut(s)	306, 321
DraIII	CACNNNGTG	1 cut(s)	33
Eco130I	CCWWGG	2 cut(s)	271, 791
Eco47I	GGWCC	1 cut(s)	172
Eco57I	CTGAAG	2 cut(s)	149, 299
EcoO109I	RGGNCCY	1 cut(s)	172
EcoT14I	CCWWGG	2 cut(s)	271, 791
EcoT22I	ATGCAT	1 cut(s)	492
ErhI	CCWWGG	2 cut(s)	271, 791
FaeI	CATG	6 cut(s)	137, 331, 490, 494, 567, 681
FaqI	GGGAC	2 cut(s)	185, 786
FatI	CATG	6 cut(s)	133, 327, 486, 490, 563, 677
FauI	CCCGC	1 cut(s)	740
FauNDI	CATATG	2 cut(s)	90, 688
Fnu4HI	GCNGC	2 cut(s)	441, 621
FokI	GGATG	2 cut(s)	214, 749
Fsp4HI	GCNGC	2 cut(s)	441, 621
FspBI	CTAG	4 cut(s)	59, 771, 792, 964
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	441, 621
GsuI	CTGGAG	1 cut(s)	915
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	3 cut(s)	426, 437, 944
HgaI	GACGC	3 cut(s)	302, 582, 788
HhaI	GCGC	1 cut(s)	766
Hin1I	GRCGYC	2 cut(s)	574, 799
Hin1II	CATG	6 cut(s)	137, 331, 490, 494, 567, 681
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HincII	GTYRAC	3 cut(s)	84, 112, 250
HindII	GTYRAC	3 cut(s)	84, 112, 250
HinfI	GANTC	1 cut(s)	670
HpaI	GTTAAC	2 cut(s)	84, 112
HpaII	CCGG	3 cut(s)	426, 437, 944
HphI	GGTGA	2 cut(s)	604, 728
Hpy166II	GTNNAC	3 cut(s)	84, 112, 250
Hpy188I	TCNGA	5 cut(s)	78, 279, 462, 473, 508
Hpy188III	TCNNGA	2 cut(s)	426, 944
Hpy8I	GTNNAC	3 cut(s)	84, 112, 250
Hpy99I	CGWCG	1 cut(s)	318
HpyAV	CCTTC	6 cut(s)	274, 358, 423, 447, 701, 762
HpyCH4III	ACNGT	3 cut(s)	215, 467, 542
HpyCH4V	TGCA	7 cut(s)	15, 107, 486, 490, 599, 644, 819
HpyF10VI	GCNNNNNNNGC	3 cut(s)	113, 411, 565
HpyF3I	CTNAG	5 cut(s)	146, 392, 507, 585, 694
Hsp92I	GRCGYC	2 cut(s)	574, 799
Hsp92II	CATG	6 cut(s)	137, 331, 490, 494, 567, 681
HspAI	GCGC	1 cut(s)	764
KflI	GGGWCCC	1 cut(s)	172
Kpn2I	TCCGGA	2 cut(s)	425, 943
KspAI	GTTAAC	2 cut(s)	84, 112
Kzo9I	GATC	5 cut(s)	55, 73, 331, 356, 940
Lsp1109I	GCAGC	1 cut(s)	427
MaeI	CTAG	4 cut(s)	59, 771, 792, 964
MaeIII	GTNAC	1 cut(s)	496
MalI	GATC	5 cut(s)	57, 75, 333, 358, 942
MboI	GATC	5 cut(s)	55, 73, 331, 356, 940
MboII	GAAGA	5 cut(s)	133, 408, 676, 679, 959
MfeI	CAATTG	1 cut(s)	380
MflI	RGATCY	1 cut(s)	331
MhlI	GDGCHC	1 cut(s)	561
MluCI	AATT	4 cut(s)	308, 343, 380, 479
MmeI	TCCRAC	2 cut(s)	143, 430
Mph1103I	ATGCAT	1 cut(s)	492
MroI	TCCGGA	2 cut(s)	425, 943
MseI	TTAA	7 cut(s)	83, 111, 305, 320, 531, 903, 920
MspI	CCGG	3 cut(s)	426, 437, 944
MunI	CAATTG	1 cut(s)	380
MvnI	CGCG	1 cut(s)	766
MwoI	GCNNNNNNNGC	3 cut(s)	113, 411, 565
NdeI	CATATG	2 cut(s)	90, 688
NdeII	GATC	5 cut(s)	55, 73, 331, 356, 940
NlaIII	CATG	6 cut(s)	137, 331, 490, 494, 567, 681
NlaIV	GGNNCC	4 cut(s)	173, 174, 435, 789
NsiI	ATGCAT	1 cut(s)	492
NspI	RCATGY	1 cut(s)	490
PaeI	GCATGC	1 cut(s)	490
PfeI	GAWTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	202
PkrI	GCNGC	2 cut(s)	442, 622
PpuMI	RGGWCCY	1 cut(s)	172
PshAI	GACNNNNGTC	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	172
PspN4I	GGNNCC	4 cut(s)	173, 174, 435, 789
PspPI	GGNCC	2 cut(s)	172, 749
PspPPI	RGGWCCY	1 cut(s)	172
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	331
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SaqAI	TTAA	7 cut(s)	83, 111, 305, 320, 531, 903, 920
SatI	GCNGC	2 cut(s)	441, 621
Sau3AI	GATC	5 cut(s)	55, 73, 331, 356, 940
Sau96I	GGNCC	2 cut(s)	172, 749
SduI	GDGCHC	1 cut(s)	561
SfcI	CTRYAG	2 cut(s)	69, 642
SinI	GGWCC	1 cut(s)	172
SphI	GCATGC	1 cut(s)	490
Sse9I	AATT	4 cut(s)	308, 343, 380, 479
SsiI	CCGC	2 cut(s)	620, 747
SspMI	CTAG	4 cut(s)	59, 771, 792, 964
StyI	CCWWGG	2 cut(s)	271, 791
TaaI	ACNGT	3 cut(s)	215, 467, 542
TaqI	TCGA	2 cut(s)	54, 895
TasI	AATT	4 cut(s)	308, 343, 380, 479
TatI	WGTACW	1 cut(s)	291
TauI	GCSGC	1 cut(s)	623
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	7 cut(s)	83, 111, 305, 320, 531, 903, 920
Tru9I	TTAA	7 cut(s)	83, 111, 305, 320, 531, 903, 920
TscAI	CASTG	3 cut(s)	203, 547, 961
TseI	GCWGC	1 cut(s)	440
TspDTI	ATGAA	1 cut(s)	327
TspGWI	ACGGA	1 cut(s)	369
TspRI	CASTG	3 cut(s)	203, 547, 961
Van91I	CCANNNNNTGG	1 cut(s)	202
VpaK11BI	GGWCC	1 cut(s)	172
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	1 cut(s)	490
XmaJI	CCTAGG	1 cut(s)	791
XspI	CTAG	4 cut(s)	59, 771, 792, 964
Zsp2I	ATGCAT	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.