Rh6AG513600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0020642
Physical Location & Seq
Reverse (-)
68394289 .. 68394774
486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG513600.1

Sequence Viewer

Length: 486 bp
ATGCATGACGTTACTAACTCTGAGTTGGGGTTTGCTTCCAGCTTTAACAACAACAGTGGCTTGTCAAGTGTGCCCTCATGGCAAAGACGCCACCCTACTGGGGAGGTGATTGCAATAACATTTGGTGTATTGGCGGTAGTATTGCTCACAAGTTCTGCAGTCTATTATTACAAAAAGAAGAAGAATCATACATGGCAACCATATGTCTTAGACGGGGCAGAAGGACCGGGTGAGGTAATGGATTTTCAACCACCTGTCTTAGAGGGGGCAGAAGGGCCTGGTGAGGTAATGGATTTTCAACATGTCTTAGACGGGGTAGAAGGACTAGGTGAGGTAACGGATTTTGATGATGATCCGCTGCTCAAGCGAAAGAGAGAGGAGGATGTCGTAGGCGGGCCTTCGAAAAAGGCGCGAACTAGGAAAACTTCACAGGTTCCTAGGAGGCGTCCCCTCCCAAGAACCTGCAAGAATAGGGCTACCCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

17.81

Weight (kDa)

6.91

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020642)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010319
rosa_rugosa Rorug06G0396300
rosa_samantha Rh6AG513600 Rh6BG526300 Rh6CG531300 Rh6DG515700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 470
AccII CGCG 1 cut(s) 412
AciI CCGC 3 cut(s) 134, 356, 393
AclWI GGATC 1 cut(s) 347
AcyI GRCGYC 2 cut(s) 88, 445
AfiI CCNNNNNNNGG 1 cut(s) 100
AflIII ACRYGT 1 cut(s) 301
AgsI TTSAA 2 cut(s) 248, 299
AjnI CCWGG 1 cut(s) 277
AluBI AGCT 1 cut(s) 42
AluI AGCT 1 cut(s) 42
AlwI GGATC 1 cut(s) 347
AoxI GGCC 2 cut(s) 275, 395
ApeKI GCWGC 1 cut(s) 358
AspA2I CCTAGG 1 cut(s) 437
AspLEI GCGC 1 cut(s) 412
AspS9I GGNCC 3 cut(s) 224, 275, 395
AsuC2I CCSGG 1 cut(s) 228
AsuHPI GGTGA 4 cut(s) 118, 242, 293, 341
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 437
BaeGI GKGCMC 1 cut(s) 75
BbvI GCAGC 1 cut(s) 345
BciT130I CCWGG 1 cut(s) 279
BcnI CCSGG 1 cut(s) 228
BfaI CTAG 3 cut(s) 326, 417, 438
BfmI CTRYAG 1 cut(s) 156
BfuAI ACCTGC 1 cut(s) 470
BglI GCCNNNNNGGC 1 cut(s) 79
BisI GCNGC 1 cut(s) 359
BlnI CCTAGG 1 cut(s) 437
BlsI GCNGC 1 cut(s) 360
Bme1390I CCNGG 2 cut(s) 228, 279
Bme18I GGWCC 1 cut(s) 224
BmgT120I GGNCC 3 cut(s) 224, 275, 395
BmiI GGNNCC 1 cut(s) 435
BmrFI CCNGG 2 cut(s) 228, 279
BmrI ACTGGG 1 cut(s) 108
BmuI ACTGGG 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 401
BpuEI CTTGAG 1 cut(s) 347
BpuMI CCSGG 1 cut(s) 228
BsaBI GATNNNNATC 1 cut(s) 351
BsaHI GRCGYC 2 cut(s) 88, 445
BsaJI CCNNGG 1 cut(s) 437
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 103
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 437
BseGI GGATG 1 cut(s) 388
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 103
BseRI GAGGAG 1 cut(s) 392
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 1 cut(s) 345
Bsh1236I CGCG 1 cut(s) 412
BshFI GGCC 2 cut(s) 277, 397
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 432
BslI CCNNNNNNNGG 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 432
BsnI GGCC 2 cut(s) 277, 397
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 1 cut(s) 352
BspACI CCGC 3 cut(s) 134, 356, 393
BspANI GGCC 2 cut(s) 277, 397
BspCNI CTCAG 1 cut(s) 13
BspFNI CGCG 1 cut(s) 412
BspLI GGNNCC 1 cut(s) 435
BspMAI CTGCAG 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 470
BspPI GGATC 1 cut(s) 347
BspT104I TTCGAA 1 cut(s) 401
BsrI ACTGG 1 cut(s) 103
BssECI CCNNGG 1 cut(s) 437
BssMI GATC 1 cut(s) 352
BssNI GRCGYC 2 cut(s) 88, 445
BssT1I CCWWGG 1 cut(s) 437
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 1 cut(s) 56
BstACI GRCGYC 2 cut(s) 88, 445
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 395
BstDEI CTNAG 4 cut(s) 21, 208, 259, 307
BstF5I GGATG 1 cut(s) 388
BstFNI CGCG 1 cut(s) 412
BstHHI GCGC 1 cut(s) 412
BstKTI GATC 1 cut(s) 355
BstMBI GATC 1 cut(s) 352
BstMWI GCNNNNNNNGC 2 cut(s) 79, 364
BstNI CCWGG 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 305
BstSCI CCNGG 2 cut(s) 226, 277
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 412
BstV1I GCAGC 1 cut(s) 345
BstXI CCANNNNNNTGG 1 cut(s) 98
BsuRI GGCC 2 cut(s) 277, 397
BtsCI GGATG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 61
BveI ACCTGC 1 cut(s) 470
Cac8I GCNNGC 1 cut(s) 395
CfoI GCGC 1 cut(s) 412
Cfr13I GGNCC 3 cut(s) 224, 275, 395
CseI GACGC 2 cut(s) 96, 434
CspCI CAANNNNNGTGG 2 cut(s) 37, 72
CviAII CATG 4 cut(s) 5, 78, 192, 302
CviJI RGCY 5 cut(s) 42, 60, 277, 397, 476
CviKI_1 RGCY 5 cut(s) 42, 60, 277, 397, 476
DdeI CTNAG 4 cut(s) 21, 208, 259, 307
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 437
Eco47I GGWCC 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 1 cut(s) 277
EcoT14I CCWWGG 1 cut(s) 437
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 437
FaeI CATG 4 cut(s) 8, 81, 195, 305
FaiI YATR 7 cut(s) 6, 79, 189, 193, 202, 204, 303
FaqI GGGAC 1 cut(s) 432
FatI CATG 4 cut(s) 4, 77, 191, 301
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 359
FokI GGATG 1 cut(s) 395
Fsp4HI GCNGC 1 cut(s) 359
FspBI CTAG 3 cut(s) 326, 417, 438
GlaI GCGC 1 cut(s) 411
GluI GCNGC 1 cut(s) 359
HaeIII GGCC 2 cut(s) 277, 397
HapII CCGG 1 cut(s) 227
HgaI GACGC 2 cut(s) 96, 434
HhaI GCGC 1 cut(s) 412
Hin1I GRCGYC 2 cut(s) 88, 445
Hin1II CATG 4 cut(s) 8, 81, 195, 305
Hin6I GCGC 1 cut(s) 410
HinP1I GCGC 1 cut(s) 410
HinfI GANTC 1 cut(s) 184
HpaII CCGG 1 cut(s) 227
HphI GGTGA 4 cut(s) 118, 242, 293, 341
Hpy188I TCNGA 1 cut(s) 22
HpyAV CCTTC 4 cut(s) 215, 266, 314, 408
HpyCH4III ACNGT 1 cut(s) 56
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 4, 113, 158, 465
HpyF10VI GCNNNNNNNGC 2 cut(s) 79, 364
HpyF3I CTNAG 4 cut(s) 21, 208, 259, 307
HpySE526I ACGT 1 cut(s) 9
Hsp92I GRCGYC 2 cut(s) 88, 445
Hsp92II CATG 4 cut(s) 8, 81, 195, 305
HspAI GCGC 1 cut(s) 410
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 8 cut(s) 52, 84, 240, 264, 267, 291, 416, 475
Lsp1109I GCAGC 1 cut(s) 345
MaeI CTAG 3 cut(s) 326, 417, 438
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 2 cut(s) 10, 334
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 2 cut(s) 190, 193
MhlI GDGCHC 1 cut(s) 75
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 358
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 228, 279
MvaI CCWGG 1 cut(s) 279
MvnI CGCG 1 cut(s) 412
MwoI GCNNNNNNNGC 2 cut(s) 79, 364
NciI CCSGG 1 cut(s) 228
NdeI CATATG 1 cut(s) 202
NdeII GATC 1 cut(s) 352
NlaIII CATG 4 cut(s) 8, 81, 195, 305
NlaIV GGNNCC 1 cut(s) 435
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 305
NspV TTCGAA 1 cut(s) 401
PciI ACATGT 1 cut(s) 301
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 1 cut(s) 360
PscI ACATGT 1 cut(s) 301
Psp6I CCWGG 1 cut(s) 277
PspGI CCWGG 1 cut(s) 277
PspN4I GGNNCC 1 cut(s) 435
PspPI GGNCC 3 cut(s) 224, 275, 395
PstI CTGCAG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 359
Sau3AI GATC 1 cut(s) 352
Sau96I GGNCC 3 cut(s) 224, 275, 395
ScrFI CCNGG 2 cut(s) 228, 279
SduI GDGCHC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 156
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SsiI CCGC 3 cut(s) 134, 356, 393
SspMI CTAG 3 cut(s) 326, 417, 438
StyD4I CCNGG 2 cut(s) 226, 277
StyI CCWWGG 1 cut(s) 437
TaaI ACNGT 1 cut(s) 56
TaiI ACGT 1 cut(s) 12
TaqI TCGA 1 cut(s) 401
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TscAI CASTG 1 cut(s) 61
TseI GCWGC 1 cut(s) 358
TspGWI ACGGA 1 cut(s) 353
TspRI CASTG 1 cut(s) 61
VpaK11BI GGWCC 1 cut(s) 224
XceI RCATGY 1 cut(s) 305
XmaJI CCTAGG 1 cut(s) 437
XspI CTAG 3 cut(s) 326, 417, 438
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.