Rorug06G0396300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0020642
Physical Location & Seq
Forward (+)
54248970 .. 54250394
1425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0396300.1

Sequence Viewer

Length: 999 bp
ATGGCATCGAAGCTCTGCGACTCGTGCAAATCGGCGACGGCGACTCTGTTCTGCCGAGCAGACTCCGCTTTCCTCTGCGTAAGCTGCGACACAAAGATCCACGCGGCCAACAAGCTGGCTTCCCGCCACGCCCGGGTCTGGTTGTGCGAGGTGTGCGAGCAGGCTCCCGCCCACGTCACGTGCAAGGCCGACGACGCCACCCTCTGCGTCACGTGCGACCGAGAAATCCACTCTGCTAACCCCCTCAGCCGCCGGCACGAGAGAGTCCCGGTCGCCCCGTTCTACGCCTCACTGAACTCGGACGACTCAACCGCCGTCAAATCTGATGCTGCCGTCAACTTCCTTGATGACCGATACTTGTCCGACGGAGATGGAGACGGAGACGGAGAGACGACTGAGGTCAGCAGAGAGGAAGCCGAGGCTGCTTCGTGGCTGCTCCCAAATCCTAAGGATCTGAATTCGGGGCAGTACGTGTTCTCTGACATGGATCCGTATTTGGATCTGGATTACGGGGCAGTGGATCCGAAAGCTCAAGCTCAGGAGGAGCAGAACAGTAGTGGTACTGACGGAGTGGTCCCTGTGCAAAGCAAGACCGTCCAGCCTCAAAGCTTTGAAATGGAGTTGCCAGGATCCAAGCCTTTCATCTATGGCTACCATGGCCACTGTTTAAGCCAGAGTGTATCATCATCCTCCTCTATGGATGTTAGCGTCGTGCCAGATGGCAGCATGCTGACGGAGATGTCAGATCCCTACCCCAAGTCGATCGGCGATCAGTTATCGCATCCGGCGGTTCAAATTTCATCGGCGGATCGGGAAGCTAGGGTGTTGAGGTACAGAGAGAAGAGAAAGAACCGAAAGTTCGAGAAGACGATTCGTTACGCATCGCGAAAAGCTTATGCGGAGACGAGACCACGAATCAAAGGCAGGTTCGCTAAGCGCACAGAAGCGGAGATCGGAGCCGAACGTCTCTGCCGCTACGGCGTCGTTCCCTCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.55

Weight (kDa)

5.69

Isoelectric Point (pI)

46.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-B_box PF00643 4 - 42 3.6e-07 B-box zinc finger
zf-B_box PF00643 46 - 91 7.7e-07 B-box zinc finger
CCT PF06203 271 - 313 5e-18 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020642)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010319
rosa_rugosa Rorug06G0396300
rosa_samantha Rh6AG513600 Rh6BG526300 Rh6CG531300 Rh6DG515700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 572, 739
Acc36I ACCTGC 1 cut(s) 915
AccII CGCG 2 cut(s) 104, 886
AcoI YGGCCR 2 cut(s) 105, 658
AcsI RAATTY 2 cut(s) 457, 795
AcvI CACGTG 2 cut(s) 180, 213
AcyI GRCGYC 2 cut(s) 195, 981
AfaI GTAC 3 cut(s) 470, 562, 833
AfiI CCNNNNNNNGG 2 cut(s) 133, 138
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 2 cut(s) 614, 794
AjiI CACGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 625
AluBI AGCT 8 cut(s) 13, 84, 115, 530, 536, 609, 818, 893
AluI AGCT 8 cut(s) 13, 84, 115, 530, 536, 609, 818, 893
Alw26I GTCTC 6 cut(s) 369, 375, 383, 896, 901, 971
Ama87I CYCGRG 1 cut(s) 132
AoxI GGCC 3 cut(s) 105, 186, 658
ApeKI GCWGC 5 cut(s) 84, 329, 422, 433, 723
ApoI RAATTY 2 cut(s) 457, 795
AspLEI GCGC 1 cut(s) 939
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 3 cut(s) 133, 134, 269
AvaI CYCGRG 1 cut(s) 132
AvaII GGWCC 1 cut(s) 574
AxyI CCTNAGG 1 cut(s) 447
BalI TGGCCA 1 cut(s) 660
BamHI GGATCC 3 cut(s) 487, 520, 629
BauI CACGAG 2 cut(s) 22, 257
BbrPI CACGTG 2 cut(s) 180, 213
BbsI GAAGAC 1 cut(s) 872
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 5 cut(s) 71, 316, 409, 420, 735
BccI CCATC 2 cut(s) 365, 713
BceAI ACGGC 4 cut(s) 54, 299, 317, 994
BciT130I CCWGG 1 cut(s) 627
BcnI CCSGG 3 cut(s) 133, 134, 269
BcoDI GTCTC 6 cut(s) 369, 375, 383, 896, 901, 971
BfaI CTAG 1 cut(s) 819
BfuAI ACCTGC 1 cut(s) 915
BglI GCCNNNNNGGC 1 cut(s) 978
BisI GCNGC 8 cut(s) 85, 105, 250, 330, 423, 434, 724, 973
BlpI GCTNAGC 1 cut(s) 933
BlsI GCNGC 8 cut(s) 86, 106, 251, 331, 424, 435, 725, 974
Bme1390I CCNGG 4 cut(s) 133, 134, 269, 627
Bme18I GGWCC 1 cut(s) 574
BmeT110I CYCGRG 1 cut(s) 132
BmgBI CACGTC 1 cut(s) 175
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 6 cut(s) 165, 489, 522, 576, 631, 958
BmrFI CCNGG 4 cut(s) 133, 134, 269, 627
BmsI GCATC 4 cut(s) 14, 316, 790, 890
BoxI GACNNNNGTC 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 872
Bpu10I CCTNAGC 2 cut(s) 245, 537
Bpu1102I GCTNAGC 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 516
BpuMI CCSGG 3 cut(s) 133, 134, 269
BsaAI YACGTR 3 cut(s) 180, 213, 472
BsaHI GRCGYC 2 cut(s) 195, 981
BsaI GGTCTC 1 cut(s) 901
BsaJI CCNNGG 3 cut(s) 132, 417, 655
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 138
Bse118I RCCGGY 1 cut(s) 252
Bse21I CCTNAGG 1 cut(s) 447
BseBI CCWGG 1 cut(s) 627
BseDI CCNNGG 3 cut(s) 132, 417, 655
BseGI GGATG 3 cut(s) 686, 706, 781
BseLI CCNNNNNNNGG 2 cut(s) 133, 138
BseMII CTCAG 3 cut(s) 259, 387, 551
BseRI GAGGAG 2 cut(s) 557, 682
BseXI GCAGC 5 cut(s) 71, 316, 409, 420, 735
Bsh1236I CGCG 2 cut(s) 104, 886
Bsh1285I CGRYCG 3 cut(s) 220, 273, 765
BshFI GGCC 3 cut(s) 107, 188, 660
BsiEI CGRYCG 3 cut(s) 220, 273, 765
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 4 cut(s) 133, 253, 269, 785
BslFI GGGAC 2 cut(s) 251, 560
BslI CCNNNNNNNGG 2 cut(s) 133, 138
BsmAI GTCTC 6 cut(s) 369, 375, 383, 896, 901, 971
BsmBI CGTCTC 5 cut(s) 369, 375, 383, 896, 971
BsmFI GGGAC 2 cut(s) 251, 560
BsnI GGCC 3 cut(s) 107, 188, 660
Bso31I GGTCTC 1 cut(s) 901
BsoBI CYCGRG 1 cut(s) 132
Bsp1720I GCTNAGC 1 cut(s) 933
Bsp19I CCATGG 1 cut(s) 655
Bsp68I TCGCGA 1 cut(s) 886
BspANI GGCC 3 cut(s) 107, 188, 660
BspCNI CTCAG 3 cut(s) 258, 388, 550
BspFNI CGCG 2 cut(s) 104, 886
BspLI GGNNCC 6 cut(s) 165, 489, 522, 576, 631, 958
BspMI ACCTGC 1 cut(s) 915
BspTNI GGTCTC 1 cut(s) 901
BsrFI RCCGGY 1 cut(s) 252
BssAI RCCGGY 1 cut(s) 252
BssECI CCNNGG 3 cut(s) 132, 417, 655
BssNI GRCGYC 2 cut(s) 195, 981
BssSI CACGAG 2 cut(s) 22, 257
BssT1I CCWWGG 1 cut(s) 655
Bst2BI CACGAG 2 cut(s) 22, 257
Bst2UI CCWGG 1 cut(s) 627
Bst4CI ACNGT 3 cut(s) 554, 595, 665
Bst6I CTCTTC 1 cut(s) 836
BstACI GRCGYC 2 cut(s) 195, 981
BstBAI YACGTR 3 cut(s) 180, 213, 472
BstC8I GCNNGC 5 cut(s) 117, 158, 162, 254, 728
BstDEI CTNAG 5 cut(s) 245, 396, 447, 537, 933
BstDSI CCRYGG 1 cut(s) 655
BstF5I GGATG 3 cut(s) 686, 706, 781
BstFNI CGCG 2 cut(s) 104, 886
BstHHI GCGC 1 cut(s) 939
BstMAI GTCTC 6 cut(s) 369, 375, 383, 896, 901, 971
BstMCI CGRYCG 3 cut(s) 220, 273, 765
BstMWI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 657, 978
BstNI CCWGG 1 cut(s) 627
BstNSI RCATGY 1 cut(s) 730
BstPAI GACNNNNGTC 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 131, 132, 267, 625
BstUI CGCG 2 cut(s) 104, 886
BstV1I GCAGC 5 cut(s) 71, 316, 409, 420, 735
BstV2I GAAGAC 1 cut(s) 872
BstX2I RGATCY 7 cut(s) 96, 451, 487, 499, 520, 629, 745
BstXI CCANNNNNNTGG 1 cut(s) 115
BstYI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 629, 745
Bsu36I CCTNAGG 1 cut(s) 447
BsuRI GGCC 3 cut(s) 107, 188, 660
BtgI CCRYGG 1 cut(s) 655
BtgZI GCGATG 1 cut(s) 867
BtrI CACGTC 1 cut(s) 175
BtsCI GGATG 3 cut(s) 686, 706, 781
BtsI GCAGTG 1 cut(s) 522
BtsIMutI CAGTG 3 cut(s) 290, 522, 661
BtuMI TCGCGA 1 cut(s) 886
BveI ACCTGC 1 cut(s) 915
Cac8I GCNNGC 5 cut(s) 117, 158, 162, 254, 728
CfoI GCGC 1 cut(s) 939
Cfr10I RCCGGY 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 574
Cfr9I CCCGGG 1 cut(s) 132
CseI GACGC 4 cut(s) 196, 203, 697, 970
Csp6I GTAC 3 cut(s) 469, 561, 832
CviAII CATG 3 cut(s) 484, 656, 727
CviQI GTAC 3 cut(s) 469, 561, 832
DdeI CTNAG 5 cut(s) 245, 396, 447, 537, 933
DrdI GACNNNNNNGTC 2 cut(s) 572, 739
DseDI GACNNNNNNGTC 2 cut(s) 572, 739
EaeI YGGCCR 2 cut(s) 105, 658
Eam1104I CTCTTC 1 cut(s) 836
EarI CTCTTC 1 cut(s) 836
EciI GGCGGA 1 cut(s) 821
Eco130I CCWWGG 1 cut(s) 655
Eco31I GGTCTC 1 cut(s) 901
Eco47I GGWCC 1 cut(s) 574
Eco72I CACGTG 2 cut(s) 180, 213
Eco81I CCTNAGG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 132
EcoRI GAATTC 1 cut(s) 457
EcoRII CCWGG 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 655
ErhI CCWWGG 1 cut(s) 655
Esp3I CGTCTC 5 cut(s) 369, 375, 383, 896, 971
FaeI CATG 3 cut(s) 487, 659, 730
FaiI YATR 6 cut(s) 485, 648, 657, 698, 728, 897
FaqI GGGAC 2 cut(s) 251, 560
FatI CATG 3 cut(s) 483, 655, 726
FauI CCCGC 2 cut(s) 131, 175
Fnu4HI GCNGC 8 cut(s) 85, 105, 250, 330, 423, 434, 724, 973
FokI GGATG 3 cut(s) 673, 713, 768
Fsp4HI GCNGC 8 cut(s) 85, 105, 250, 330, 423, 434, 724, 973
FspBI CTAG 1 cut(s) 819
GlaI GCGC 1 cut(s) 938
GluI GCNGC 8 cut(s) 85, 105, 250, 330, 423, 434, 724, 973
HaeIII GGCC 3 cut(s) 107, 188, 660
HapII CCGG 4 cut(s) 133, 253, 269, 785
HgaI GACGC 4 cut(s) 196, 203, 697, 970
HhaI GCGC 1 cut(s) 939
Hin1I GRCGYC 2 cut(s) 195, 981
Hin1II CATG 3 cut(s) 487, 659, 730
Hin6I GCGC 1 cut(s) 937
HinP1I GCGC 1 cut(s) 937
HincII GTYRAC 1 cut(s) 337
HindII GTYRAC 1 cut(s) 337
HindIII AAGCTT 2 cut(s) 607, 891
HinfI GANTC 7 cut(s) 20, 43, 62, 264, 305, 871, 915
HpaII CCGG 4 cut(s) 133, 253, 269, 785
Hpy166II GTNNAC 1 cut(s) 337
Hpy188I TCNGA 8 cut(s) 301, 325, 364, 456, 481, 525, 745, 956
Hpy188III TCNNGA 5 cut(s) 503, 539, 812, 862, 885
Hpy8I GTNNAC 1 cut(s) 337
Hpy99I CGWCG 6 cut(s) 40, 194, 197, 368, 713, 986
HpyCH4III ACNGT 3 cut(s) 554, 595, 665
HpyCH4IV ACGT 5 cut(s) 174, 179, 212, 471, 964
HpyCH4V TGCA 3 cut(s) 27, 183, 583
HpyF10VI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 657, 978
HpyF3I CTNAG 5 cut(s) 245, 396, 447, 537, 933
HpySE526I ACGT 5 cut(s) 174, 179, 212, 471, 964
Hsp92I GRCGYC 2 cut(s) 195, 981
Hsp92II CATG 3 cut(s) 487, 659, 730
HspAI GCGC 1 cut(s) 937
KroI GCCGGC 1 cut(s) 252
KroNI GCCGGC 1 cut(s) 254
LmnI GCTCC 4 cut(s) 169, 441, 544, 956
Lsp1109I GCAGC 5 cut(s) 71, 316, 409, 420, 735
LweI GCATC 4 cut(s) 14, 316, 790, 890
MaeI CTAG 1 cut(s) 819
MaeII ACGT 5 cut(s) 174, 179, 212, 471, 964
MaeIII GTNAC 3 cut(s) 175, 208, 875
MboII GAAGA 2 cut(s) 853, 877
MflI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 629, 745
MlsI TGGCCA 1 cut(s) 660
MluCI AATT 2 cut(s) 457, 795
MluNI TGGCCA 1 cut(s) 660
MlyI GAGTC 5 cut(s) 14, 37, 56, 273, 299
MmeI TCCRAC 1 cut(s) 387
Mox20I TGGCCA 1 cut(s) 660
MroNI GCCGGC 1 cut(s) 252
MscI TGGCCA 1 cut(s) 660
MseI TTAA 1 cut(s) 668
Msp20I TGGCCA 1 cut(s) 660
MspI CCGG 4 cut(s) 133, 253, 269, 785
MspR9I CCNGG 4 cut(s) 133, 134, 269, 627
MvaI CCWGG 1 cut(s) 627
MvnI CGCG 2 cut(s) 104, 886
MwoI GCNNNNNNNGC 9 cut(s) 24, 65, 84, 153, 194, 213, 422, 657, 978
NaeI GCCGGC 1 cut(s) 254
NciI CCSGG 3 cut(s) 133, 134, 269
NcoI CCATGG 1 cut(s) 655
NgoMIV GCCGGC 1 cut(s) 252
NlaIII CATG 3 cut(s) 487, 659, 730
NlaIV GGNNCC 6 cut(s) 165, 489, 522, 576, 631, 958
NmeAIII GCCGAG 2 cut(s) 80, 442
NmuCI GTSAC 2 cut(s) 175, 208
NruI TCGCGA 1 cut(s) 886
NspI RCATGY 1 cut(s) 730
PaeI GCATGC 1 cut(s) 730
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PdiI GCCGGC 1 cut(s) 254
PfeI GAWTC 2 cut(s) 871, 915
PkrI GCNGC 8 cut(s) 86, 106, 251, 331, 424, 435, 725, 974
Ple19I CGATCG 1 cut(s) 765
PleI GAGTC 5 cut(s) 14, 37, 56, 272, 299
PmaCI CACGTG 2 cut(s) 180, 213
PmlI CACGTG 2 cut(s) 180, 213
PpsI GAGTC 5 cut(s) 14, 37, 56, 272, 299
Ppu21I YACGTR 3 cut(s) 180, 213, 472
PshAI GACNNNNGTC 1 cut(s) 398
Psp6I CCWGG 1 cut(s) 625
PspCI CACGTG 2 cut(s) 180, 213
PspGI CCWGG 1 cut(s) 625
PspN4I GGNNCC 6 cut(s) 165, 489, 522, 576, 631, 958
PspPI GGNCC 1 cut(s) 574
PsuI RGATCY 7 cut(s) 96, 451, 487, 499, 520, 629, 745
PvuI CGATCG 1 cut(s) 765
RruI TCGCGA 1 cut(s) 886
RsaI GTAC 3 cut(s) 470, 562, 833
RsaNI GTAC 3 cut(s) 469, 561, 832
SaqAI TTAA 1 cut(s) 668
SatI GCNGC 8 cut(s) 85, 105, 250, 330, 423, 434, 724, 973
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 5 cut(s) 14, 37, 56, 273, 299
ScrFI CCNGG 4 cut(s) 133, 134, 269, 627
SfaNI GCATC 4 cut(s) 14, 316, 790, 890
SinI GGWCC 1 cut(s) 574
SmaI CCCGGG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 531
SmoI CTYRAG 1 cut(s) 531
SphI GCATGC 1 cut(s) 730
Sse9I AATT 2 cut(s) 457, 795
SspMI CTAG 1 cut(s) 819
StyD4I CCNGG 4 cut(s) 131, 132, 267, 625
StyI CCWWGG 1 cut(s) 655
TaaI ACNGT 3 cut(s) 554, 595, 665
TaiI ACGT 5 cut(s) 177, 182, 215, 474, 967
TaqI TCGA 3 cut(s) 8, 761, 861
TaqII GACCGA 2 cut(s) 234, 366
TasI AATT 2 cut(s) 457, 795
TauI GCSGC 3 cut(s) 107, 252, 975
TfiI GAWTC 2 cut(s) 871, 915
Tru1I TTAA 1 cut(s) 668
Tru9I TTAA 1 cut(s) 668
TscAI CASTG 3 cut(s) 297, 522, 668
TseFI GTSAC 2 cut(s) 175, 208
TseI GCWGC 5 cut(s) 84, 329, 422, 433, 723
Tsp45I GTSAC 2 cut(s) 175, 208
TspDTI ATGAA 2 cut(s) 631, 789
TspGWI ACGGA 6 cut(s) 381, 393, 399, 480, 582, 749
TspMI CCCGGG 1 cut(s) 132
TspRI CASTG 3 cut(s) 297, 522, 668
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 2 cut(s) 457, 795
XceI RCATGY 1 cut(s) 730
XmaI CCCGGG 1 cut(s) 132
XspI CTAG 1 cut(s) 819
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.