Rh6CG531300

Di-glucose binding within endoplasmic reticulum

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0020642
Physical Location & Seq
Forward (+)
68465758 .. 68469678
3921 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG531300.1

Sequence Viewer

Length: 771 bp
ATGGGAGGGTGGCAGCCGGCTTACTTTGACAAGCACCCATGGGGCGTTCATAGGGTTTGGACGCCCGTTGCTACTTCTGGTCAGAGGTTTATAACAAGCAACAAAAGCATTATGAAAGTGCTGAAACCTCCAAACTTCTACCCAGCAGAGATTTATAGTACAGCAGTACGTCCTGGGTTACAATGGGATCTTTCATATAATTCCTTCAACGGATCAATCCCTGAAACGCTTGGACAATTGTCCTCGCTAAGAAGACTATGCCTGAATAGCAACCTTTTGTCCGGAAGGGTTCCGGCTGCTCTTGTTGGAAGGCTTCTGAACGGTGTCAGATATAACTTTAACAACAACAGTGGCTTGTCAGGTGTGCCCTCATGGCAAAGACGCCACCCTGCTGAGGAGGTGATTGCAATAACATTTGGTGTCTTGGCGGCAGTATTGCTCGCAAGTTCTGCAGTCTATTATTACAAAAAGAAGAAGAATCATACATGGCAACCATATGTCTTAGACGGGGCAGAAGGACTGGGTGAGGTAATGGATTTCAACTTAGAGGGGGCAGAAGGGCCTGGTGAGGTAATGGATTTTCAACATGTCTTAGACGGGGTAGAAGGACCGGGTGAGGTAACGGATTTTGATGATGATCCACTGCTCAAGCGAAAGAGAGAGGAGGATGTCGTAGGCGGGCCTTCAAAAAAGGCGCGAACTAGGAAAACTTCACAGGTTCCTAGGAGGCGTCCCCTACCAAGAACCTGCAAGAATAGGGCTACCCTGTGA

Protein Analysis

256

Amino Acids

28.5

Weight (kDa)

9.58

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020642)

Species Orthologous Gene IDs
rosa_laevigata RLG00000010319
rosa_rugosa Rorug06G0396300
rosa_samantha Rh6AG513600 Rh6BG526300 Rh6CG531300 Rh6DG515700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
Acc36I ACCTGC 1 cut(s) 755
AccII CGCG 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 281
AciI CCGC 2 cut(s) 428, 678
AclWI GGATC 3 cut(s) 195, 220, 632
AcyI GRCGYC 3 cut(s) 62, 382, 730
AfaI GTAC 2 cut(s) 160, 168
AfiI CCNNNNNNNGG 1 cut(s) 394
AflIII ACRYGT 1 cut(s) 586
AgsI TTSAA 4 cut(s) 208, 541, 584, 687
AjnI CCWGG 2 cut(s) 172, 562
AlwI GGATC 3 cut(s) 195, 220, 632
Aor13HI TCCGGA 1 cut(s) 281
AoxI GGCC 2 cut(s) 560, 680
ApeKI GCWGC 2 cut(s) 13, 296
AspA2I CCTAGG 1 cut(s) 722
AspLEI GCGC 1 cut(s) 697
AspS9I GGNCC 3 cut(s) 560, 608, 680
AsuC2I CCSGG 1 cut(s) 612
AsuHPI GGTGA 4 cut(s) 412, 536, 578, 626
AvaII GGWCC 1 cut(s) 608
AvrII CCTAGG 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 369
BbsI GAAGAC 1 cut(s) 259
BbvCI CCTCAGC 1 cut(s) 393
BbvI GCAGC 2 cut(s) 25, 283
BciT130I CCWGG 2 cut(s) 174, 564
BcnI CCSGG 1 cut(s) 612
BfaI CTAG 2 cut(s) 702, 723
BfmI CTRYAG 1 cut(s) 450
BfuAI ACCTGC 1 cut(s) 755
BglI GCCNNNNNGGC 1 cut(s) 373
BisI GCNGC 3 cut(s) 14, 297, 429
BlnI CCTAGG 1 cut(s) 722
BlsI GCNGC 3 cut(s) 15, 298, 430
Bme1390I CCNGG 3 cut(s) 174, 564, 612
Bme18I GGWCC 1 cut(s) 608
BmgT120I GGNCC 3 cut(s) 560, 608, 680
BmiI GGNNCC 2 cut(s) 291, 720
BmrFI CCNGG 3 cut(s) 174, 564, 612
BmrI ACTGGG 1 cut(s) 530
BmuI ACTGGG 1 cut(s) 530
BoxI GACNNNNGTC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 259
Bpu10I CCTNAGC 1 cut(s) 393
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 636
BsaHI GRCGYC 3 cut(s) 62, 382, 730
BsaJI CCNNGG 3 cut(s) 38, 173, 722
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 394
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 636
BseAI TCCGGA 1 cut(s) 281
BseBI CCWGG 2 cut(s) 174, 564
BseDI CCNNGG 3 cut(s) 38, 173, 722
BseGI GGATG 1 cut(s) 673
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 1 cut(s) 394
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 525
BseRI GAGGAG 2 cut(s) 410, 677
BseSI GKGCMC 1 cut(s) 369
BseXI GCAGC 2 cut(s) 25, 283
BseYI CCCAGC 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 697
BshFI GGCC 2 cut(s) 562, 682
BsiSI CCGG 4 cut(s) 17, 282, 293, 611
BslFI GGGAC 1 cut(s) 717
BslI CCNNNNNNNGG 1 cut(s) 394
BsmFI GGGAC 1 cut(s) 717
BsnI GGCC 2 cut(s) 562, 682
Bsp1286I GDGCHC 1 cut(s) 369
Bsp13I TCCGGA 1 cut(s) 281
Bsp143I GATC 3 cut(s) 187, 212, 637
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 2 cut(s) 428, 678
BspANI GGCC 2 cut(s) 562, 682
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 281
BspFNI CGCG 1 cut(s) 697
BspLI GGNNCC 2 cut(s) 291, 720
BspMAI CTGCAG 1 cut(s) 454
BspMI ACCTGC 1 cut(s) 755
BspPI GGATC 3 cut(s) 195, 220, 632
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 1 cut(s) 525
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 3 cut(s) 38, 173, 722
BssMI GATC 3 cut(s) 187, 212, 637
BssNI GRCGYC 3 cut(s) 62, 382, 730
BssT1I CCWWGG 2 cut(s) 38, 722
Bst2UI CCWGG 2 cut(s) 174, 564
Bst4CI ACNGT 2 cut(s) 323, 350
BstACI GRCGYC 3 cut(s) 62, 382, 730
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 3 cut(s) 18, 441, 680
BstDEI CTNAG 5 cut(s) 248, 393, 502, 544, 592
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 1 cut(s) 673
BstFNI CGCG 1 cut(s) 697
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 3 cut(s) 190, 215, 640
BstMBI GATC 3 cut(s) 187, 212, 637
BstMWI GCNNNNNNNGC 4 cut(s) 105, 267, 373, 449
BstNI CCWGG 2 cut(s) 174, 564
BstNSI RCATGY 1 cut(s) 590
BstPAI GACNNNNGTC 1 cut(s) 238
BstSCI CCNGG 3 cut(s) 172, 562, 610
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 369
BstUI CGCG 1 cut(s) 697
BstV1I GCAGC 2 cut(s) 25, 283
BstV2I GAAGAC 1 cut(s) 259
BstX2I RGATCY 1 cut(s) 187
BstYI RGATCY 1 cut(s) 187
BsuRI GGCC 2 cut(s) 562, 682
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 1 cut(s) 673
BtsI GCAGTG 1 cut(s) 641
BtsIMutI CAGTG 2 cut(s) 355, 641
BveI ACCTGC 1 cut(s) 755
Cac8I GCNNGC 3 cut(s) 18, 441, 680
CfoI GCGC 1 cut(s) 697
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 3 cut(s) 560, 608, 680
CseI GACGC 3 cut(s) 70, 390, 719
Csp6I GTAC 2 cut(s) 159, 167
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 4 cut(s) 39, 372, 486, 587
CviJI RGCY 8 cut(s) 16, 20, 296, 313, 354, 562, 682, 761
CviKI_1 RGCY 8 cut(s) 16, 20, 296, 313, 354, 562, 682, 761
CviQI GTAC 2 cut(s) 159, 167
DdeI CTNAG 5 cut(s) 248, 393, 502, 544, 592
DpnI GATC 3 cut(s) 189, 214, 639
DpnII GATC 3 cut(s) 187, 212, 637
Eco130I CCWWGG 2 cut(s) 38, 722
Eco47I GGWCC 1 cut(s) 608
EcoO109I RGGNCCY 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 172, 562
EcoT14I CCWWGG 2 cut(s) 38, 722
ErhI CCWWGG 2 cut(s) 38, 722
FaeI CATG 4 cut(s) 42, 375, 489, 590
FaqI GGGAC 1 cut(s) 717
FatI CATG 4 cut(s) 38, 371, 485, 586
FauI CCCGC 1 cut(s) 671
FauNDI CATATG 1 cut(s) 496
Fnu4HI GCNGC 3 cut(s) 14, 297, 429
FokI GGATG 1 cut(s) 680
Fsp4HI GCNGC 3 cut(s) 14, 297, 429
FspBI CTAG 2 cut(s) 702, 723
GlaI GCGC 1 cut(s) 696
GluI GCNGC 3 cut(s) 14, 297, 429
GsaI CCCAGC 1 cut(s) 146
HaeIII GGCC 2 cut(s) 562, 682
HapII CCGG 4 cut(s) 17, 282, 293, 611
HgaI GACGC 3 cut(s) 70, 390, 719
HhaI GCGC 1 cut(s) 697
Hin1I GRCGYC 3 cut(s) 62, 382, 730
Hin1II CATG 4 cut(s) 42, 375, 489, 590
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HinfI GANTC 1 cut(s) 478
HpaII CCGG 4 cut(s) 17, 282, 293, 611
HphI GGTGA 4 cut(s) 412, 536, 578, 626
Hpy188I TCNGA 3 cut(s) 84, 318, 329
Hpy188III TCNNGA 1 cut(s) 282
HpyAV CCTTC 7 cut(s) 214, 279, 303, 509, 551, 599, 693
HpyCH4III ACNGT 2 cut(s) 323, 350
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 407, 452, 750
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 267, 373, 449
HpyF3I CTNAG 5 cut(s) 248, 393, 502, 544, 592
HpySE526I ACGT 1 cut(s) 169
Hsp92I GRCGYC 3 cut(s) 62, 382, 730
Hsp92II CATG 4 cut(s) 42, 375, 489, 590
HspAI GCGC 1 cut(s) 695
Kpn2I TCCGGA 1 cut(s) 281
KroI GCCGGC 1 cut(s) 16
KroNI GCCGGC 1 cut(s) 18
Kzo9I GATC 3 cut(s) 187, 212, 637
Lsp1109I GCAGC 2 cut(s) 25, 283
MaeI CTAG 2 cut(s) 702, 723
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 2 cut(s) 177, 619
MalI GATC 3 cut(s) 189, 214, 639
MboI GATC 3 cut(s) 187, 212, 637
MboII GAAGA 3 cut(s) 264, 484, 487
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 1 cut(s) 187
MhlI GDGCHC 1 cut(s) 369
MluCI AATT 2 cut(s) 199, 236
MmeI TCCRAC 1 cut(s) 286
MroI TCCGGA 1 cut(s) 281
MroNI GCCGGC 1 cut(s) 16
MseI TTAA 1 cut(s) 339
MspI CCGG 4 cut(s) 17, 282, 293, 611
MspR9I CCNGG 3 cut(s) 174, 564, 612
MunI CAATTG 1 cut(s) 236
MvaI CCWGG 2 cut(s) 174, 564
MvnI CGCG 1 cut(s) 697
MwoI GCNNNNNNNGC 4 cut(s) 105, 267, 373, 449
NaeI GCCGGC 1 cut(s) 18
NciI CCSGG 1 cut(s) 612
NcoI CCATGG 1 cut(s) 38
NdeI CATATG 1 cut(s) 496
NdeII GATC 3 cut(s) 187, 212, 637
NgoMIV GCCGGC 1 cut(s) 16
NlaIII CATG 4 cut(s) 42, 375, 489, 590
NlaIV GGNNCC 2 cut(s) 291, 720
NspI RCATGY 1 cut(s) 590
PciI ACATGT 1 cut(s) 586
PdiI GCCGGC 1 cut(s) 18
PfeI GAWTC 1 cut(s) 478
PkrI GCNGC 3 cut(s) 15, 298, 430
PscI ACATGT 1 cut(s) 586
PshAI GACNNNNGTC 1 cut(s) 238
PsiI TTATAA 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 172, 562
PspFI CCCAGC 1 cut(s) 142
PspGI CCWGG 2 cut(s) 172, 562
PspN4I GGNNCC 2 cut(s) 291, 720
PspPI GGNCC 3 cut(s) 560, 608, 680
PstI CTGCAG 1 cut(s) 454
PsuI RGATCY 1 cut(s) 187
RsaI GTAC 2 cut(s) 160, 168
RsaNI GTAC 2 cut(s) 159, 167
SaqAI TTAA 1 cut(s) 339
SatI GCNGC 3 cut(s) 14, 297, 429
Sau3AI GATC 3 cut(s) 187, 212, 637
Sau96I GGNCC 3 cut(s) 560, 608, 680
ScrFI CCNGG 3 cut(s) 174, 564, 612
SduI GDGCHC 1 cut(s) 369
SfcI CTRYAG 1 cut(s) 450
SinI GGWCC 1 cut(s) 608
SmlI CTYRAG 1 cut(s) 647
SmoI CTYRAG 1 cut(s) 647
Sse9I AATT 2 cut(s) 199, 236
SsiI CCGC 2 cut(s) 428, 678
SspMI CTAG 2 cut(s) 702, 723
StyD4I CCNGG 3 cut(s) 172, 562, 610
StyI CCWWGG 2 cut(s) 38, 722
TaaI ACNGT 2 cut(s) 323, 350
TaiI ACGT 1 cut(s) 172
TasI AATT 2 cut(s) 199, 236
TatI WGTACW 1 cut(s) 158
TauI GCSGC 1 cut(s) 431
TfiI GAWTC 1 cut(s) 478
Tru1I TTAA 1 cut(s) 339
Tru9I TTAA 1 cut(s) 339
TscAI CASTG 2 cut(s) 355, 648
TseI GCWGC 2 cut(s) 13, 296
TspDTI ATGAA 3 cut(s) 38, 128, 183
TspGWI ACGGA 2 cut(s) 225, 638
TspRI CASTG 2 cut(s) 355, 648
VpaK11BI GGWCC 1 cut(s) 608
XceI RCATGY 1 cut(s) 590
XmaJI CCTAGG 1 cut(s) 722
XspI CTAG 2 cut(s) 702, 723
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.