Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0020003

Physical Location & Seq

Genomic Coordinates Reverse (-)

7359937 .. 7361878

Gene Structure 1942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011175

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGAGGAGACGATCGTGCCGAATGCTTACCGCTTCTGTAAGCTTTTGTTGGTGAAGAGACCACATTCTTGTTCTACACAAGTTCACAGGCCAAAGCATCATGAAGGAGGTGAGCGGGAAACTACTGATGCAGATACTCTGGATGATGGTGAAGAAAAGGTCCAAGGTTATCTGTCTGAGCAGTCTAGAACCATGAAGGTTGAGATTTGGGATCTTAGTACTGTAGAAAGGGGTATGCAACTACCTCAAAGCTGTTCTGCTGGCTCCTCAGCTATTTCTACCAAGGCAAGAGTTATGGGGATGGCTCCATGGTTTGGTAGGATACTAGAAATCCAGGTGTTCCAGTTACATCTGTCAAGTTCAATTCAGAGCCAGTTTCAAGCCTATGCATTGATGGCTCATGCAATGGTGGTATCTCAGGAGCTGCAGATGAAAAAATTGTGCTCTACAGTTTGGACACTTCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

156

Amino Acids

17.5

Weight (kDa)

6.58

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020003)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011175
rosa_multiflora	Rmu_sc0003633.1_g000003
rosa_samantha	Rh6AG425900 Rh6AG426000 Rh6BG476400 Rh6CG438700 Rh6DG426100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	2 cut(s)	31, 115
AclWI	GGATC	1 cut(s)	219
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	314
AgsI	TTSAA	2 cut(s)	363, 380
AjnI	CCWGG	1 cut(s)	333
AluBI	AGCT	4 cut(s)	43, 252, 272, 424
AluI	AGCT	4 cut(s)	43, 252, 272, 424
Alw21I	GWGCWC	1 cut(s)	446
Alw26I	GTCTC	2 cut(s)	2, 52
AlwI	GGATC	1 cut(s)	219
AlwNI	CAGNNNCTG	1 cut(s)	424
AoxI	GGCC	1 cut(s)	89
ApeKI	GCWGC	1 cut(s)	424
AspS9I	GGNCC	1 cut(s)	160
AsuHPI	GGTGA	3 cut(s)	64, 122, 161
AvaII	GGWCC	1 cut(s)	160
Bbv12I	GWGCWC	1 cut(s)	446
BbvCI	CCTCAGC	1 cut(s)	268
BbvI	GCAGC	1 cut(s)	411
BccI	CCATC	3 cut(s)	140, 295, 388
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	315
BcoDI	GTCTC	2 cut(s)	2, 52
BfaI	CTAG	2 cut(s)	186, 326
BfmI	CTRYAG	3 cut(s)	222, 425, 447
BfuI	GTATCC	1 cut(s)	315
BisI	GCNGC	1 cut(s)	425
BlsI	GCNGC	1 cut(s)	426
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	335
Bme18I	GGWCC	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	160
BmiI	GGNNCC	2 cut(s)	265, 306
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	106, 118
Bpu10I	CCTNAGC	1 cut(s)	268
BsaI	GGTCTC	1 cut(s)	52
BsaJI	CCNNGG	3 cut(s)	163, 282, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	314
Bse1I	ACTGG	2 cut(s)	343, 373
Bse3DI	GCAATG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	335
BseDI	CCNNGG	3 cut(s)	163, 282, 308
BseGI	GGATG	2 cut(s)	148, 306
BseLI	CCNNNNNNNGG	1 cut(s)	314
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	168, 282, 431
BseNI	ACTGG	2 cut(s)	343, 373
BseRI	GAGGAG	2 cut(s)	20, 256
BseXI	GCAGC	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	91
BsiEI	CGRYCG	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	314
BsmAI	GTCTC	2 cut(s)	2, 52
BsmBI	CGTCTC	1 cut(s)	2
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	91
Bso31I	GGTCTC	1 cut(s)	52
Bsp1286I	GDGCHC	1 cut(s)	446
Bsp143I	GATC	2 cut(s)	12, 211
Bsp19I	CCATGG	1 cut(s)	308
BspACI	CCGC	2 cut(s)	31, 115
BspANI	GGCC	1 cut(s)	91
BspCNI	CTCAG	3 cut(s)	169, 281, 430
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	2 cut(s)	265, 306
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	219
BspTNI	GGTCTC	1 cut(s)	52
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	343, 373
BssECI	CCNNGG	3 cut(s)	163, 282, 308
BssMI	GATC	2 cut(s)	12, 211
BssT1I	CCWWGG	3 cut(s)	163, 282, 308
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	2 cut(s)	223, 451
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	4 cut(s)	177, 215, 268, 417
BstDSI	CCRYGG	1 cut(s)	308
BstF5I	GGATG	2 cut(s)	148, 306
BstKTI	GATC	2 cut(s)	15, 214
BstMAI	GTCTC	2 cut(s)	2, 52
BstMBI	GATC	2 cut(s)	12, 211
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	1 cut(s)	395
BstNI	CCWGG	1 cut(s)	335
BstSCI	CCNGG	1 cut(s)	333
BstSFI	CTRYAG	3 cut(s)	222, 425, 447
BstV1I	GCAGC	1 cut(s)	411
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	315
BsuRI	GGCC	1 cut(s)	91
BtgI	CCRYGG	1 cut(s)	308
BtsCI	GGATG	2 cut(s)	148, 306
Cac8I	GCNNGC	1 cut(s)	262
CaiI	CAGNNNCTG	1 cut(s)	424
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	4 cut(s)	101, 193, 309, 401
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	4 cut(s)	177, 215, 268, 417
DpnI	GATC	2 cut(s)	14, 213
DpnII	GATC	2 cut(s)	12, 211
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco130I	CCWWGG	3 cut(s)	163, 282, 308
Eco31I	GGTCTC	1 cut(s)	52
Eco47I	GGWCC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	333
EcoT14I	CCWWGG	3 cut(s)	163, 282, 308
EcoT22I	ATGCAT	1 cut(s)	391
ErhI	CCWWGG	3 cut(s)	163, 282, 308
Esp3I	CGTCTC	1 cut(s)	2
FaeI	CATG	4 cut(s)	104, 196, 312, 404
FaiI	YATR	8 cut(s)	102, 194, 236, 296, 310, 387, 402, 466
FatI	CATG	4 cut(s)	100, 192, 308, 400
FauI	CCCGC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	425
FokI	GGATG	2 cut(s)	155, 313
Fsp4HI	GCNGC	1 cut(s)	425
FspBI	CTAG	2 cut(s)	186, 326
GluI	GCNGC	1 cut(s)	425
HaeIII	GGCC	1 cut(s)	91
Hin1II	CATG	4 cut(s)	104, 196, 312, 404
HindIII	AAGCTT	1 cut(s)	41
HphI	GGTGA	3 cut(s)	64, 122, 161
Hpy166II	GTNNAC	1 cut(s)	85
Hpy188I	TCNGA	2 cut(s)	178, 369
Hpy188III	TCNNGA	4 cut(s)	101, 140, 186, 419
Hpy8I	GTNNAC	1 cut(s)	85
HpyAV	CCTTC	2 cut(s)	98, 190
HpyCH4III	ACNGT	2 cut(s)	223, 451
HpyCH4V	TGCA	5 cut(s)	131, 238, 389, 404, 427
HpyF10VI	GCNNNNNNNGC	1 cut(s)	395
HpyF3I	CTNAG	4 cut(s)	177, 215, 268, 417
Hsp92II	CATG	4 cut(s)	104, 196, 312, 404
Kzo9I	GATC	2 cut(s)	12, 211
LmnI	GCTCC	3 cut(s)	269, 310, 421
LpnPI	CCDG	8 cut(s)	73, 125, 246, 320, 347, 356, 386, 404
Lsp1109I	GCAGC	1 cut(s)	411
LweI	GCATC	2 cut(s)	106, 118
MaeI	CTAG	2 cut(s)	186, 326
MaeIII	GTNAC	1 cut(s)	345
MalI	GATC	2 cut(s)	14, 213
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	2 cut(s)	12, 211
MboII	GAAGA	2 cut(s)	67, 164
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	1 cut(s)	446
MluCI	AATT	2 cut(s)	363, 437
MnlI	CCTC	3 cut(s)	101, 255, 277
Mph1103I	ATGCAT	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	1 cut(s)	395
NcoI	CCATGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	12, 211
NlaIII	CATG	4 cut(s)	104, 196, 312, 404
NlaIV	GGNNCC	2 cut(s)	265, 306
NsiI	ATGCAT	1 cut(s)	391
PagI	TCATGA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	1 cut(s)	17
PctI	GAATGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	426
Ple19I	CGATCG	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	333
PspGI	CCWGG	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	265, 306
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	429
PstNI	CAGNNNCTG	1 cut(s)	424
PsuI	RGATCY	1 cut(s)	211
PvuI	CGATCG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SatI	GCNGC	1 cut(s)	425
Sau3AI	GATC	2 cut(s)	12, 211
Sau96I	GGNCC	1 cut(s)	160
ScaI	AGTACT	1 cut(s)	220
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	446
SfaNI	GCATC	2 cut(s)	106, 118
SfcI	CTRYAG	3 cut(s)	222, 425, 447
SinI	GGWCC	1 cut(s)	160
Sse9I	AATT	2 cut(s)	363, 437
SsiI	CCGC	2 cut(s)	31, 115
SspMI	CTAG	2 cut(s)	186, 326
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	3 cut(s)	163, 282, 308
TaaI	ACNGT	2 cut(s)	223, 451
TasI	AATT	2 cut(s)	363, 437
TatI	WGTACW	1 cut(s)	218
TseI	GCWGC	1 cut(s)	424
TspDTI	ATGAA	3 cut(s)	117, 209, 446
Van91I	CCANNNNNTGG	1 cut(s)	314
VpaK11BI	GGWCC	1 cut(s)	160
XbaI	TCTAGA	1 cut(s)	185
XspI	CTAG	2 cut(s)	186, 326
ZrmI	AGTACT	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	391

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.