Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0020003

Physical Location & Seq

Genomic Coordinates Forward (+)

61754830 .. 61757690

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG426000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGTGTTTGTCTAGTAGATGGCCACCGCCGGACCCAGTGGCTGTGCTTAGAGGTCACCGTGCCTCTGTCACCGACCTCTGTTTCCATCCGTCTCAACCTCTCCTATACATTGGTTCCACAGACGGTGAGTTGCAGATTTGGGACACTCTGCAGAATCAGACGATAGTATCAGTAGGGGTGCATAGTGCAGTACATGGGGTTGCTTCTGTTGCTTGTAGCTCGTTGATTGGAGCTGACAAAGTTATCAGCCTGGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGTTTCCCTTTGTGACGATCCCGACGAATGCTTACCACTTCTGTAAGCTTTCGTTGGTAAAGAGACGTCATTCTTGTTCTACACAAGTTGACGGGCCAAAGCATCATGACGGAGGTGAGTGGGAGACTACTGGTGCAGATACTCTGGATGATAATGAAGAAAATGTCCAAGGGTATCTGTCTGAGCAGTCTAGAACCAATGAAGGCTTGTTAAGATTAGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

176

Amino Acids

19.11

Weight (kDa)

5.68

Isoelectric Point (pI)

38.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	12 - 48	8.4e-09	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	13 - 99	1.1e-09	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	14 - 96	2.9e-12	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	14 - 96	1.8e-07	Prp19 WD40 domain
Beta-prop_TEP1_2nd	PF25047	15 - 97	1.4e-08	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	15 - 65	2.9e-06	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	21 - 100	7.5e-07	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020003)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011175
rosa_multiflora	Rmu_sc0003633.1_g000003
rosa_samantha	Rh6AG425900 Rh6AG426000 Rh6BG476400 Rh6CG438700 Rh6DG426100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	373
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	1 cut(s)	316
AcoI	YGGCCR	1 cut(s)	20
AcyI	GRCGYC	1 cut(s)	370
AfaI	GTAC	1 cut(s)	192
AfiI	CCNNNNNNNGG	1 cut(s)	256
AjnI	CCWGG	2 cut(s)	249, 302
AluBI	AGCT	3 cut(s)	219, 233, 352
AluI	AGCT	3 cut(s)	219, 233, 352
Alw26I	GTCTC	3 cut(s)	96, 361, 422
AlwI	GGATC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	41
AoxI	GGCC	2 cut(s)	20, 398
AspS9I	GGNCC	2 cut(s)	31, 398
AsuHPI	GGTGA	4 cut(s)	47, 61, 137, 431
AvaII	GGWCC	1 cut(s)	31
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BalI	TGGCCA	1 cut(s)	22
BccI	CCATC	4 cut(s)	12, 93, 254, 284
BciT130I	CCWGG	2 cut(s)	251, 304
BcoDI	GTCTC	3 cut(s)	96, 361, 422
BfaI	CTAG	2 cut(s)	12, 495
BfmI	CTRYAG	1 cut(s)	149
Bme1390I	CCNGG	2 cut(s)	251, 304
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 398
BmiI	GGNNCC	2 cut(s)	33, 115
BmrFI	CCNGG	2 cut(s)	251, 304
BmrI	ACTGGG	1 cut(s)	29
BmsI	GCATC	1 cut(s)	415
BmuI	ACTGGG	1 cut(s)	29
BsaHI	GRCGYC	1 cut(s)	370
BsaJI	CCNNGG	2 cut(s)	250, 472
Bsc4I	CCNNNNNNNGG	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	35, 439
BseBI	CCWGG	2 cut(s)	251, 304
BseDI	CCNNGG	2 cut(s)	250, 472
BseGI	GGATG	3 cut(s)	85, 265, 457
BseLI	CCNNNNNNNGG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	477
BseNI	ACTGG	2 cut(s)	35, 439
BseYI	CCCAGC	1 cut(s)	276
BsgI	GTGCAG	2 cut(s)	207, 459
BshFI	GGCC	2 cut(s)	22, 400
BsiSI	CCGG	1 cut(s)	29
BslFI	GGGAC	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	256
BsmAI	GTCTC	3 cut(s)	96, 361, 422
BsmBI	CGTCTC	2 cut(s)	96, 361
BsmFI	GGGAC	1 cut(s)	155
BsmI	GAATGC	1 cut(s)	337
BsnI	GGCC	2 cut(s)	22, 400
Bsp143I	GATC	1 cut(s)	321
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	2 cut(s)	22, 400
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	33, 115
BspMAI	CTGCAG	1 cut(s)	153
BspPI	GGATC	1 cut(s)	316
BsrI	ACTGG	2 cut(s)	35, 439
BssECI	CCNNGG	2 cut(s)	250, 472
BssMI	GATC	1 cut(s)	321
BssNI	GRCGYC	1 cut(s)	370
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	251, 304
Bst4CI	ACNGT	3 cut(s)	59, 125, 268
BstACI	GRCGYC	1 cut(s)	370
BstDEI	CTNAG	2 cut(s)	47, 486
BstEII	GGTNACC	1 cut(s)	53
BstF5I	GGATG	3 cut(s)	85, 265, 457
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	3 cut(s)	96, 361, 422
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	251, 304
BstPI	GGTNACC	1 cut(s)	53
BstSCI	CCNGG	2 cut(s)	249, 302
BstSFI	CTRYAG	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	22, 400
BtsCI	GGATG	3 cut(s)	85, 265, 457
BtsIMutI	CAGTG	1 cut(s)	42
CaiI	CAGNNNCTG	1 cut(s)	41
CciI	TCATGA	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	31, 398
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	194, 410
CviJI	RGCY	8 cut(s)	22, 41, 219, 233, 249, 352, 400, 510
CviKI_1	RGCY	8 cut(s)	22, 41, 219, 233, 249, 352, 400, 510
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	2 cut(s)	47, 486
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
EaeI	YGGCCR	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	31
Eco91I	GGTNACC	1 cut(s)	53
EcoO65I	GGTNACC	1 cut(s)	53
EcoRII	CCWGG	2 cut(s)	249, 302
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
Esp3I	CGTCTC	2 cut(s)	96, 361
FaeI	CATG	2 cut(s)	197, 413
FaiI	YATR	4 cut(s)	106, 183, 195, 411
FaqI	GGGAC	1 cut(s)	155
FatI	CATG	2 cut(s)	193, 409
FokI	GGATG	3 cut(s)	72, 272, 464
FspBI	CTAG	2 cut(s)	12, 495
GsaI	CCCAGC	1 cut(s)	280
HaeIII	GGCC	2 cut(s)	22, 400
HapII	CCGG	1 cut(s)	29
Hin1I	GRCGYC	1 cut(s)	370
Hin1II	CATG	2 cut(s)	197, 413
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HindIII	AAGCTT	1 cut(s)	350
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	4 cut(s)	47, 61, 137, 431
Hpy166II	GTNNAC	1 cut(s)	394
Hpy188I	TCNGA	3 cut(s)	159, 487, 530
Hpy188III	TCNNGA	4 cut(s)	325, 410, 449, 495
Hpy8I	GTNNAC	1 cut(s)	394
Hpy99I	CGWCG	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	500
HpyCH4III	ACNGT	3 cut(s)	59, 125, 268
HpyCH4IV	ACGT	1 cut(s)	370
HpyCH4V	TGCA	5 cut(s)	133, 151, 181, 188, 440
HpyF10VI	GCNNNNNNNGC	1 cut(s)	209
HpyF3I	CTNAG	2 cut(s)	47, 486
HpySE526I	ACGT	1 cut(s)	370
Hsp92I	GRCGYC	1 cut(s)	370
Hsp92II	CATG	2 cut(s)	197, 413
Kzo9I	GATC	1 cut(s)	321
LmnI	GCTCC	1 cut(s)	230
LpnPI	CCDG	9 cut(s)	42, 48, 236, 262, 263, 289, 316, 420, 434
LweI	GCATC	1 cut(s)	415
MaeI	CTAG	2 cut(s)	12, 495
MaeII	ACGT	1 cut(s)	370
MaeIII	GTNAC	3 cut(s)	53, 67, 316
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	473
MlsI	TGGCCA	1 cut(s)	22
MluNI	TGGCCA	1 cut(s)	22
MnlI	CCTC	6 cut(s)	44, 73, 86, 108, 287, 410
Mox20I	TGGCCA	1 cut(s)	22
MscI	TGGCCA	1 cut(s)	22
MseI	TTAA	2 cut(s)	270, 515
Msp20I	TGGCCA	1 cut(s)	22
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	2 cut(s)	251, 304
Mva1269I	GAATGC	1 cut(s)	337
MvaI	CCWGG	2 cut(s)	251, 304
MwoI	GCNNNNNNNGC	1 cut(s)	209
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	2 cut(s)	197, 413
NlaIV	GGNNCC	2 cut(s)	33, 115
NmuCI	GTSAC	3 cut(s)	53, 67, 316
PagI	TCATGA	1 cut(s)	409
PcsI	WCGNNNNNNNCGW	1 cut(s)	326
PctI	GAATGC	1 cut(s)	337
PfeI	GAWTC	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	249, 302
PspEI	GGTNACC	1 cut(s)	53
PspFI	CCCAGC	1 cut(s)	276
PspGI	CCWGG	2 cut(s)	249, 302
PspN4I	GGNNCC	2 cut(s)	33, 115
PspPI	GGNCC	2 cut(s)	31, 398
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	41
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	270, 515
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	2 cut(s)	31, 398
ScrFI	CCNGG	2 cut(s)	251, 304
SfaNI	GCATC	1 cut(s)	415
SfcI	CTRYAG	1 cut(s)	149
SinI	GGWCC	1 cut(s)	31
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	12, 495
StyD4I	CCNGG	2 cut(s)	249, 302
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	3 cut(s)	59, 125, 268
TaiI	ACGT	1 cut(s)	373
TatI	WGTACW	1 cut(s)	190
TfiI	GAWTC	1 cut(s)	154
Tru1I	TTAA	2 cut(s)	270, 515
Tru9I	TTAA	2 cut(s)	270, 515
TscAI	CASTG	1 cut(s)	42
TseFI	GTSAC	3 cut(s)	53, 67, 316
Tsp45I	GTSAC	3 cut(s)	53, 67, 316
TspDTI	ATGAA	2 cut(s)	474, 519
TspGWI	ACGGA	2 cut(s)	78, 429
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	494
XspI	CTAG	2 cut(s)	12, 495
ZraI	GACGTC	1 cut(s)	371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.