Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0020003

Physical Location & Seq

Genomic Coordinates Forward (+)

61742443 .. 61752499

Gene Structure 10057 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG438700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGAAGAGAGAGATGAGGTTGGGAGGTCTGACCTGTACGTGCGAGATGAAAAGCTCCGGTACGGCGGCGGTGGTGGATTTGCCGGAGAGAGTGAGGAGGTGCGCACGTTAGCGTCGGGGTGTGGAATTGAGAAGGGGGAGTGTATAAAGCCACCGCCTGACCCGGTGGCTGTGCTTAGAGGTCACCGTGCCTCTGTCACCGACCTCTGTTTCCATCGGTCTCAACCTCTCCTATACATTGGTTCCGCAGACGGTGAGTTGCAGATTTGGGACACTCTGCAGAATCGGACGATAGTATCAGCAGGGGTGCATAGTGCAGCACATGGGGTTGCTTCTGTTGCTTGTAGCTCGTCGATTGGAGCTGACAAAGTTATCAACCAAGGTAGGGATGGAACTGTTAAGTGCTGGGATATTGGAGATGGAGGTCTATCCAGGACTCCCTCTGTGACGATCCCGACGAATGCTTACCACTTCTGTAAGCTTTCGTTGGTGAAGAGACCTCATTCTTGTTCTACACAAGTTGACGGGACAAAGCATCATGACGGAGGTGAGCGGGAGACTACTGGTGCAGATACTATGGATGATAATGAAGAAAATGTCCAAGGGTATCTGTCTGAGCAGTCTAGAACTAATGAAGGCTTGTTAAGATTAGTAGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

219

Amino Acids

23.51

Weight (kDa)

5.35

Isoelectric Point (pI)

36.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40	PF00400	55 - 91	9.9e-08	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	56 - 146	3.8e-08	WDR5 beta-propeller domain
WD40_Prp19	PF24814	56 - 141	3.3e-06	Prp19 WD40 domain
Beta-prop_WDR3_1st	PF25173	57 - 140	7.2e-11	WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	57 - 139	1.5e-07	TEP-1 second beta-propeller
Beta-prop_THOC3	PF25174	58 - 158	6.8e-07	THOC3 beta-propeller domain
WD40_WDHD1_1st	PF24817	63 - 154	2.2e-06	WDHD1 first WD40 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0020003)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011175
rosa_multiflora	Rmu_sc0003633.1_g000003
rosa_samantha	Rh6AG425900 Rh6AG426000 Rh6BG476400 Rh6CG438700 Rh6DG426100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	104
AccBSI	CCGCTC	1 cut(s)	553
AciI	CCGC	5 cut(s)	66, 69, 155, 246, 553
AclWI	GGATC	1 cut(s)	445
AfaI	GTAC	2 cut(s)	38, 62
AfiI	CCNNNNNNNGG	1 cut(s)	385
AjnI	CCWGG	1 cut(s)	431
AluBI	AGCT	4 cut(s)	55, 348, 362, 481
AluI	AGCT	4 cut(s)	55, 348, 362, 481
Alw26I	GTCTC	3 cut(s)	225, 490, 551
AlwI	GGATC	1 cut(s)	445
ApeKI	GCWGC	1 cut(s)	317
AspLEI	GCGC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	164
AsuHPI	GGTGA	5 cut(s)	176, 190, 266, 502, 560
BaeI	ACNNNNGTAYC	2 cut(s)	279, 312
BbvI	GCAGC	1 cut(s)	329
BccI	CCATC	3 cut(s)	222, 383, 413
BceAI	ACGGC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	433
BcnI	CCSGG	1 cut(s)	164
BcoDI	GTCTC	3 cut(s)	225, 490, 551
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	1 cut(s)	278
BisI	GCNGC	2 cut(s)	67, 318
BlsI	GCNGC	2 cut(s)	68, 319
Bme1390I	CCNGG	2 cut(s)	164, 433
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	2 cut(s)	164, 433
BmsI	GCATC	1 cut(s)	544
BpuMI	CCSGG	1 cut(s)	164
BsaAI	YACGTR	1 cut(s)	40
BsaI	GGTCTC	2 cut(s)	225, 490
BsaJI	CCNNGG	2 cut(s)	379, 601
BsaWI	WCCGGW	1 cut(s)	57
Bsc4I	CCNNNNNNNGG	1 cut(s)	385
Bse1I	ACTGG	1 cut(s)	568
BseBI	CCWGG	1 cut(s)	433
BseDI	CCNNGG	2 cut(s)	379, 601
BseGI	GGATG	2 cut(s)	394, 586
BseLI	CCNNNNNNNGG	1 cut(s)	385
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	329
BseYI	CCCAGC	1 cut(s)	405
BsgI	GTGCAG	2 cut(s)	336, 588
BsiSI	CCGG	3 cut(s)	58, 84, 164
BslFI	GGGAC	2 cut(s)	284, 541
BslI	CCNNNNNNNGG	1 cut(s)	385
BsmAI	GTCTC	3 cut(s)	225, 490, 551
BsmFI	GGGAC	2 cut(s)	284, 541
BsmI	GAATGC	1 cut(s)	466
Bso31I	GGTCTC	2 cut(s)	225, 490
Bsp143I	GATC	1 cut(s)	450
BspACI	CCGC	5 cut(s)	66, 69, 155, 246, 553
BspCNI	CTCAG	1 cut(s)	607
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	1 cut(s)	244
BspMAI	CTGCAG	1 cut(s)	282
BspPI	GGATC	1 cut(s)	445
BspTNI	GGTCTC	2 cut(s)	225, 490
BsrBI	CCGCTC	1 cut(s)	553
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	2 cut(s)	379, 601
BssMI	GATC	1 cut(s)	450
BssT1I	CCWWGG	2 cut(s)	379, 601
Bst2UI	CCWGG	1 cut(s)	433
Bst4CI	ACNGT	3 cut(s)	188, 254, 397
Bst6I	CTCTTC	1 cut(s)	488
BstBAI	YACGTR	1 cut(s)	40
BstDEI	CTNAG	2 cut(s)	176, 615
BstEII	GGTNACC	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	394, 586
BstHHI	GCGC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	453
BstMAI	GTCTC	3 cut(s)	225, 490, 551
BstMBI	GATC	1 cut(s)	450
BstMWI	GCNNNNNNNGC	1 cut(s)	338
BstNI	CCWGG	1 cut(s)	433
BstPI	GGTNACC	1 cut(s)	182
BstSCI	CCNGG	2 cut(s)	162, 431
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	1 cut(s)	329
BtsCI	GGATG	2 cut(s)	394, 586
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	105
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	37, 61
CviAII	CATG	2 cut(s)	323, 539
CviJI	RGCY	7 cut(s)	55, 151, 170, 348, 362, 481, 639
CviKI_1	RGCY	7 cut(s)	55, 151, 170, 348, 362, 481, 639
CviQI	GTAC	2 cut(s)	37, 61
DdeI	CTNAG	2 cut(s)	176, 615
DpnI	GATC	1 cut(s)	452
DpnII	GATC	1 cut(s)	450
Eam1104I	CTCTTC	1 cut(s)	488
EarI	CTCTTC	1 cut(s)	488
Eco130I	CCWWGG	2 cut(s)	379, 601
Eco31I	GGTCTC	2 cut(s)	225, 490
Eco91I	GGTNACC	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	182
EcoRII	CCWGG	1 cut(s)	431
EcoT14I	CCWWGG	2 cut(s)	379, 601
ErhI	CCWWGG	2 cut(s)	379, 601
FaeI	CATG	2 cut(s)	326, 542
FaiI	YATR	6 cut(s)	146, 235, 312, 324, 540, 578
FaqI	GGGAC	2 cut(s)	284, 541
FatI	CATG	2 cut(s)	322, 538
FauI	CCCGC	1 cut(s)	546
Fnu4HI	GCNGC	2 cut(s)	67, 318
FokI	GGATG	2 cut(s)	401, 593
Fsp4HI	GCNGC	2 cut(s)	67, 318
FspAI	RTGCGCAY	1 cut(s)	104
FspBI	CTAG	1 cut(s)	624
FspI	TGCGCA	1 cut(s)	104
GlaI	GCGC	1 cut(s)	104
GluI	GCNGC	2 cut(s)	67, 318
GsaI	CCCAGC	1 cut(s)	409
HapII	CCGG	3 cut(s)	58, 84, 164
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	1 cut(s)	105
Hin1II	CATG	2 cut(s)	326, 542
Hin6I	GCGC	1 cut(s)	103
HinP1I	GCGC	1 cut(s)	103
HincII	GTYRAC	1 cut(s)	523
HindII	GTYRAC	1 cut(s)	523
HindIII	AAGCTT	1 cut(s)	479
HinfI	GANTC	2 cut(s)	283, 436
HpaII	CCGG	3 cut(s)	58, 84, 164
HphI	GGTGA	5 cut(s)	176, 190, 266, 502, 560
Hpy166II	GTNNAC	1 cut(s)	523
Hpy188I	TCNGA	4 cut(s)	31, 288, 616, 659
Hpy188III	TCNNGA	3 cut(s)	454, 539, 624
Hpy8I	GTNNAC	1 cut(s)	523
Hpy99I	CGWCG	3 cut(s)	118, 355, 460
HpyAV	CCTTC	2 cut(s)	127, 629
HpyCH4III	ACNGT	3 cut(s)	188, 254, 397
HpyCH4IV	ACGT	2 cut(s)	39, 107
HpyCH4V	TGCA	5 cut(s)	262, 280, 310, 317, 569
HpyF10VI	GCNNNNNNNGC	1 cut(s)	338
HpyF3I	CTNAG	2 cut(s)	176, 615
HpySE526I	ACGT	2 cut(s)	39, 107
Hsp92II	CATG	2 cut(s)	326, 542
HspAI	GCGC	1 cut(s)	103
Kzo9I	GATC	1 cut(s)	450
LmnI	GCTCC	2 cut(s)	60, 359
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	544
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	39, 107
MaeIII	GTNAC	3 cut(s)	182, 196, 445
MalI	GATC	1 cut(s)	452
MbiI	CCGCTC	1 cut(s)	553
MboI	GATC	1 cut(s)	450
MboII	GAAGA	3 cut(s)	17, 505, 602
MluCI	AATT	1 cut(s)	126
MlyI	GAGTC	1 cut(s)	430
MseI	TTAA	2 cut(s)	399, 644
MspI	CCGG	3 cut(s)	58, 84, 164
MspR9I	CCNGG	2 cut(s)	164, 433
Mva1269I	GAATGC	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	433
MwoI	GCNNNNNNNGC	1 cut(s)	338
NciI	CCSGG	1 cut(s)	164
NdeII	GATC	1 cut(s)	450
NlaIII	CATG	2 cut(s)	326, 542
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	3 cut(s)	182, 196, 445
NsbI	TGCGCA	1 cut(s)	104
PagI	TCATGA	1 cut(s)	538
PcsI	WCGNNNNNNNCGW	1 cut(s)	455
PctI	GAATGC	1 cut(s)	466
PfeI	GAWTC	1 cut(s)	283
PfoI	TCCNGGA	1 cut(s)	431
PkrI	GCNGC	2 cut(s)	68, 319
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	431
PspEI	GGTNACC	1 cut(s)	182
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	431
PspN4I	GGNNCC	1 cut(s)	244
PstI	CTGCAG	1 cut(s)	282
RsaI	GTAC	2 cut(s)	38, 62
RsaNI	GTAC	2 cut(s)	37, 61
SaqAI	TTAA	2 cut(s)	399, 644
SatI	GCNGC	2 cut(s)	67, 318
Sau3AI	GATC	1 cut(s)	450
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	164, 433
SfaNI	GCATC	1 cut(s)	544
SfcI	CTRYAG	1 cut(s)	278
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	5 cut(s)	66, 69, 155, 246, 553
SspMI	CTAG	1 cut(s)	624
StyD4I	CCNGG	2 cut(s)	162, 431
StyI	CCWWGG	2 cut(s)	379, 601
TaaI	ACNGT	3 cut(s)	188, 254, 397
TaiI	ACGT	2 cut(s)	42, 110
TaqI	TCGA	1 cut(s)	353
TaqII	GACCGA	1 cut(s)	207
TasI	AATT	1 cut(s)	126
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	283
Tru1I	TTAA	2 cut(s)	399, 644
Tru9I	TTAA	2 cut(s)	399, 644
TseFI	GTSAC	3 cut(s)	182, 196, 445
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	3 cut(s)	182, 196, 445
TspDTI	ATGAA	3 cut(s)	63, 603, 648
TspGWI	ACGGA	1 cut(s)	558
XbaI	TCTAGA	1 cut(s)	623
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.