Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0020003

Physical Location & Seq

Genomic Coordinates Forward (+)

60718770 .. 60719045

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG426100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 180 bp

ATGGAGATAGGAGGTCTATCCAGGTTGGAGACGATCGCGACGAATGCTTACCACTTCTGTAAGCTTTCGTTGGTGAAGAGACCACATTCTTGTTCTACACAAGTTGACAGGCCAAAGCATCATGAAGGAGGTGAGAGGGAAACTACTGATGCAGATACTCTGGATGATAGTGAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000075 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006282 GO:0006810 GO:0006950 GO:0006974 GO:0007275 GO:0008150 GO:0009555 GO:0009636 GO:0009663 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009987 GO:0010035 GO:0010038 GO:0010044 GO:0010154 GO:0010162 GO:0010431 GO:0010496 GO:0010497 GO:0010564 GO:0016043 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0022611 GO:0031323 GO:0031461 GO:0031570 GO:0032501 GO:0032502 GO:0032504 GO:0032991 GO:0033554 GO:0034330 GO:0035670 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045216 GO:0045786 GO:0045787 GO:0048229 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048609 GO:0048700 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051052 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051716 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0071156 GO:0071158 GO:0071695 GO:0071840 GO:0072718 GO:0080008 GO:0080090 GO:0080134 GO:0080135 GO:0090068 GO:0090567 GO:0097327 GO:0097439 GO:0099402 GO:1902494 GO:1990234 GO:2000026 GO:2000280 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WD40

Protein Analysis

59

Amino Acids

6.61

Weight (kDa)

5.21

Isoelectric Point (pI)

34.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020003)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000011175
rosa_multiflora	Rmu_sc0003633.1_g000003
rosa_samantha	Rh6AG425900 Rh6AG426000 Rh6BG476400 Rh6CG438700 Rh6DG426100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	38
AjnI	CCWGG	1 cut(s)	20
AluBI	AGCT	1 cut(s)	64
AluI	AGCT	1 cut(s)	64
Alw26I	GTCTC	2 cut(s)	23, 73
AoxI	GGCC	1 cut(s)	110
AsuHPI	GGTGA	2 cut(s)	85, 143
BciT130I	CCWGG	1 cut(s)	22
BcoDI	GTCTC	2 cut(s)	23, 73
Bme1390I	CCNGG	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	127, 139
BsaI	GGTCTC	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	22
BseGI	GGATG	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	38
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	1 cut(s)	112
BsiEI	CGRYCG	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	23, 73
BsmBI	CGTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	49
BsnI	GGCC	1 cut(s)	112
Bso31I	GGTCTC	1 cut(s)	73
Bsp143I	GATC	1 cut(s)	33
Bsp68I	TCGCGA	1 cut(s)	38
BspANI	GGCC	1 cut(s)	112
BspFNI	CGCG	1 cut(s)	38
BspHI	TCATGA	1 cut(s)	121
BspTNI	GGTCTC	1 cut(s)	73
BssMI	GATC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	22
Bst6I	CTCTTC	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	36
BstMAI	GTCTC	2 cut(s)	23, 73
BstMBI	GATC	1 cut(s)	33
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	20
BstUI	CGCG	1 cut(s)	38
BsuRI	GGCC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	169
BtuMI	TCGCGA	1 cut(s)	38
CciI	TCATGA	1 cut(s)	121
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	2 cut(s)	64, 112
CviKI_1	RGCY	2 cut(s)	64, 112
DpnI	GATC	1 cut(s)	35
DpnII	GATC	1 cut(s)	33
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	20
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	1 cut(s)	125
FaiI	YATR	1 cut(s)	123
FatI	CATG	1 cut(s)	121
FokI	GGATG	1 cut(s)	176
HaeIII	GGCC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	125
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	62
HphI	GGTGA	2 cut(s)	85, 143
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188III	TCNNGA	3 cut(s)	37, 122, 161
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	1 cut(s)	43
HpyAV	CCTTC	1 cut(s)	119
HpyCH4V	TGCA	1 cut(s)	152
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
Hsp92II	CATG	1 cut(s)	125
Kzo9I	GATC	1 cut(s)	33
LpnPI	CCDG	4 cut(s)	7, 34, 94, 146
LweI	GCATC	2 cut(s)	127, 139
MalI	GATC	1 cut(s)	35
MboI	GATC	1 cut(s)	33
MboII	GAAGA	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	6
MnlI	CCTC	3 cut(s)	5, 122, 129
MspR9I	CCNGG	1 cut(s)	22
Mva1269I	GAATGC	1 cut(s)	49
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	1 cut(s)	44
NdeII	GATC	1 cut(s)	33
NlaIII	CATG	1 cut(s)	125
NruI	TCGCGA	1 cut(s)	38
PagI	TCATGA	1 cut(s)	121
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	49
Ple19I	CGATCG	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
PvuI	CGATCG	1 cut(s)	36
RruI	TCGCGA	1 cut(s)	38
Sau3AI	GATC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	22
SetI	ASST	4 cut(s)	16, 26, 66, 133
SfaNI	GCATC	2 cut(s)	127, 139
SgeI	CNNG	8 cut(s)	33, 34, 49, 102, 113, 121, 134, 173
StyD4I	CCNGG	1 cut(s)	20
TspDTI	ATGAA	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.