RLG00000011211

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
7721062 .. 7722314
1253 bp
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UTR
Exon/CDS
Intron
RLM00000011211

Sequence Viewer

Length: 381 bp
ATGGATAGTGGTGCAAAGGGATGTGAGGTAATTGCGAGGGTTCTTGAGGGACTGAGGGAGTCGGAGAAGCGTGAGGTAGAGTGGAGGACTAGCGGCAGCGGGAGTGCTGAGTCTACTCAGCGACCACCGTCAGCCTCGAAAATCGGCGTCCTCGAGTCTGGTTCGATTGAAGAGCAGAAGCAAGCGTTCTTTGCTCGGCGTCGCTGTGCTCGGCGTGCCGTCCTAACTCGGTTCAGCGACTCGACCAAGTCCAAAGCAAGTTCTGATAAGAAAGGTGCTTATAAGAAACAAGGACGACAAGGAATTGGAGAGGAAGGACATGGAATTGGAGGCATTAGGGGCACGATCATATTGAGGTTCACAGGGCTCCAATCAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

13.57

Weight (kDa)

10.08

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021541)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011211 RLG00000036486 RLG00000036670
rosa_multiflora Rmu_sc0000407.1_g000002
rosa_roxburghii Rroxscaffold_7G00166290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 282
AccI GTMKAC 1 cut(s) 113
AciI CCGC 2 cut(s) 93, 99
AcyI GRCGYC 2 cut(s) 147, 199
AgsI TTSAA 1 cut(s) 170
Alw21I GWGCWC 1 cut(s) 211
Ama87I CYCGRG 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 344
BanII GRGCYC 1 cut(s) 369
Bbv12I GWGCWC 1 cut(s) 211
BbvI GCAGC 1 cut(s) 108
BceAI ACGGC 1 cut(s) 203
BfaI CTAG 1 cut(s) 90
BisI GCNGC 2 cut(s) 94, 97
BlsI GCNGC 2 cut(s) 95, 98
BmeT110I CYCGRG 1 cut(s) 152
BmiI GGNNCC 1 cut(s) 368
BoxI GACNNNNGTC 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 65
BsaHI GRCGYC 2 cut(s) 147, 199
BseGI GGATG 1 cut(s) 26
BseMII CTCAG 3 cut(s) 44, 99, 131
BseSI GKGCMC 1 cut(s) 344
BseXI GCAGC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 63
BsmFI GGGAC 1 cut(s) 63
BsoBI CYCGRG 1 cut(s) 152
Bsp1286I GDGCHC 3 cut(s) 211, 344, 369
Bsp143I GATC 1 cut(s) 345
BspACI CCGC 2 cut(s) 93, 99
BspCNI CTCAG 3 cut(s) 45, 100, 130
BspLI GGNNCC 1 cut(s) 368
BspQI GCTCTTC 1 cut(s) 165
BssMI GATC 1 cut(s) 345
BssNI GRCGYC 2 cut(s) 147, 199
Bst4CI ACNGT 1 cut(s) 129
Bst6I CTCTTC 1 cut(s) 165
BstACI GRCGYC 2 cut(s) 147, 199
BstC8I GCNNGC 2 cut(s) 183, 216
BstDEI CTNAG 3 cut(s) 53, 108, 117
BstF5I GGATG 1 cut(s) 26
BstKTI GATC 1 cut(s) 348
BstMBI GATC 1 cut(s) 345
BstMWI GCNNNNNNNGC 3 cut(s) 191, 215, 339
BstPAI GACNNNNGTC 1 cut(s) 127
BstSLI GKGCMC 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 108
BtsCI GGATG 1 cut(s) 26
Cac8I GCNNGC 2 cut(s) 183, 216
CseI GACGC 2 cut(s) 136, 188
CviAII CATG 1 cut(s) 320
CviJI RGCY 2 cut(s) 134, 367
CviKI_1 RGCY 2 cut(s) 134, 367
DdeI CTNAG 3 cut(s) 53, 108, 117
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 369
Eco88I CYCGRG 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 369
FaeI CATG 1 cut(s) 323
FaiI YATR 3 cut(s) 282, 321, 350
FaqI GGGAC 1 cut(s) 63
FatI CATG 1 cut(s) 319
FauI CCCGC 1 cut(s) 92
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 2 cut(s) 94, 97
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 1 cut(s) 369
Fsp4HI GCNGC 2 cut(s) 94, 97
FspBI CTAG 1 cut(s) 90
GluI GCNGC 2 cut(s) 94, 97
HgaI GACGC 2 cut(s) 136, 188
Hin1I GRCGYC 2 cut(s) 147, 199
Hin1II CATG 1 cut(s) 323
HinfI GANTC 4 cut(s) 59, 110, 155, 239
Hpy166II GTNNAC 2 cut(s) 114, 360
Hpy188I TCNGA 2 cut(s) 64, 265
Hpy188III TCNNGA 1 cut(s) 44
Hpy8I GTNNAC 2 cut(s) 114, 360
Hpy99I CGWCG 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 308
HpyCH4III ACNGT 1 cut(s) 129
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 215, 339
HpyF3I CTNAG 3 cut(s) 53, 108, 117
Hsp92I GRCGYC 2 cut(s) 147, 199
Hsp92II CATG 1 cut(s) 323
Kzo9I GATC 1 cut(s) 345
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 1 cut(s) 372
LpnPI CCDG 3 cut(s) 144, 348, 360
Lsp1109I GCAGC 1 cut(s) 108
MaeI CTAG 1 cut(s) 90
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 182
MhlI GDGCHC 3 cut(s) 211, 344, 369
MluCI AATT 3 cut(s) 30, 303, 324
MlyI GAGTC 4 cut(s) 68, 119, 164, 233
MmeI TCCRAC 1 cut(s) 42
MspA1I CMGCKG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 191, 215, 339
NdeII GATC 1 cut(s) 345
NlaIII CATG 1 cut(s) 323
NlaIV GGNNCC 1 cut(s) 368
NmeAIII GCCGAG 2 cut(s) 175, 190
PaeR7I CTCGAG 1 cut(s) 152
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PflFI GACNNNGTC 1 cut(s) 247
PkrI GCNGC 2 cut(s) 95, 98
PleI GAGTC 4 cut(s) 67, 118, 163, 233
PpsI GAGTC 4 cut(s) 67, 118, 163, 233
PshAI GACNNNNGTC 1 cut(s) 127
PsiI TTATAA 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 368
PspXI VCTCGAGB 1 cut(s) 152
PsyI GACNNNGTC 1 cut(s) 247
SapI GCTCTTC 1 cut(s) 165
SatI GCNGC 2 cut(s) 94, 97
Sau3AI GATC 1 cut(s) 345
SchI GAGTC 4 cut(s) 68, 119, 164, 233
SduI GDGCHC 3 cut(s) 211, 344, 369
SetI ASST 5 cut(s) 30, 78, 277, 359, 379
Sfr274I CTCGAG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 152
SmlI CTYRAG 2 cut(s) 44, 152
SmoI CTYRAG 2 cut(s) 44, 152
Sse9I AATT 3 cut(s) 30, 303, 324
SsiI CCGC 2 cut(s) 93, 99
SspMI CTAG 1 cut(s) 90
TaaI ACNGT 1 cut(s) 129
TaqI TCGA 4 cut(s) 137, 153, 164, 242
TasI AATT 3 cut(s) 30, 303, 324
TauI GCSGC 1 cut(s) 96
TseI GCWGC 1 cut(s) 96
Tth111I GACNNNGTC 1 cut(s) 247
XhoI CTCGAG 1 cut(s) 152
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.