RLG00000036670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0021541
Physical Location & Seq
Forward (+)
83143992 .. 83147015
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036670

Sequence Viewer

Length: 333 bp
ATGAAGAAGATTGCCTTTGTCGTCCTTGTCGTCGCCGTCTGCATGACCGCAGTCATGGCCGCGGAAGTTGAAAAGGCAAAGCCCAAAGCCACGAAAGCTGGTGCCCCTGCCCCGGCTCCCACAGGTTCCGACGCAGCCGCTCCTACTCCCACCGGGGCTCCTGCACCTGCACATTCCTCTGCCAACACCATATGTCACTGTGCTCGGCGTGCCATCCTAACTCGGTTCAGCTACTCGGCCATGTCCAAGTCAGATTGGATTTTGTTAGCTAGAAAGTTGCCGCTTTCTGTGCTCGACTTCGTTGTCGCTGACTCTGTTTGGAGCAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

11.46

Weight (kDa)

9.72

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021541)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011211 RLG00000036486 RLG00000036670
rosa_multiflora Rmu_sc0000407.1_g000002
rosa_roxburghii Rroxscaffold_7G00166290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 175
AasI GACNNNNNNGTC 1 cut(s) 302
Acc36I ACCTGC 1 cut(s) 175
AccB1I GGYRCC 1 cut(s) 101
AccBSI CCGCTC 1 cut(s) 140
AccII CGCG 1 cut(s) 62
AciI CCGC 5 cut(s) 48, 60, 62, 138, 281
AcoI YGGCCR 2 cut(s) 57, 237
AfiI CCNNNNNNNGG 1 cut(s) 112
AgsI TTSAA 1 cut(s) 71
AluBI AGCT 3 cut(s) 98, 231, 269
AluI AGCT 3 cut(s) 98, 231, 269
Alw21I GWGCWC 2 cut(s) 205, 294
AoxI GGCC 2 cut(s) 57, 237
ApeKI GCWGC 1 cut(s) 134
AsuC2I CCSGG 2 cut(s) 113, 154
BaeGI GKGCMC 1 cut(s) 106
BanI GGYRCC 1 cut(s) 101
BanII GRGCYC 1 cut(s) 160
Bbv12I GWGCWC 2 cut(s) 205, 294
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 20
BcnI CCSGG 2 cut(s) 113, 154
BfaI CTAG 1 cut(s) 270
BfuAI ACCTGC 1 cut(s) 175
BisI GCNGC 4 cut(s) 60, 135, 138, 281
BlsI GCNGC 4 cut(s) 61, 136, 139, 282
Bme1390I CCNGG 2 cut(s) 113, 154
BmiI GGNNCC 4 cut(s) 103, 117, 127, 159
BmrFI CCNGG 2 cut(s) 113, 154
BoxI GACNNNNGTC 1 cut(s) 50
BpuMI CCSGG 2 cut(s) 113, 154
BsaJI CCNNGG 3 cut(s) 60, 111, 153
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 60, 111, 153
BseGI GGATG 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 106
BseXI GCAGC 1 cut(s) 146
BsgI GTGCAG 2 cut(s) 147, 153
Bsh1236I CGCG 1 cut(s) 62
BshFI GGCC 2 cut(s) 59, 239
BshNI GGYRCC 1 cut(s) 101
BsiHKAI GWGCWC 2 cut(s) 205, 294
BsiSI CCGG 2 cut(s) 113, 153
BslI CCNNNNNNNGG 1 cut(s) 112
BsnI GGCC 2 cut(s) 59, 239
Bsp1286I GDGCHC 4 cut(s) 106, 160, 205, 294
BspACI CCGC 5 cut(s) 48, 60, 62, 138, 281
BspANI GGCC 2 cut(s) 59, 239
BspFNI CGCG 1 cut(s) 62
BspLI GGNNCC 4 cut(s) 103, 117, 127, 159
BspMI ACCTGC 1 cut(s) 175
BspT107I GGYRCC 1 cut(s) 101
BsrBI CCGCTC 1 cut(s) 140
BssECI CCNNGG 3 cut(s) 60, 111, 153
Bst4CI ACNGT 1 cut(s) 200
BstC8I GCNNGC 1 cut(s) 210
BstDSI CCRYGG 1 cut(s) 60
BstF5I GGATG 1 cut(s) 213
BstFNI CGCG 1 cut(s) 62
BstMWI GCNNNNNNNGC 4 cut(s) 56, 95, 209, 289
BstPAI GACNNNNGTC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 111, 152
BstSLI GKGCMC 1 cut(s) 106
BstUI CGCG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 146
BsuRI GGCC 2 cut(s) 59, 239
BtgI CCRYGG 1 cut(s) 60
BtsCI GGATG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 196
BveI ACCTGC 1 cut(s) 175
Cac8I GCNNGC 1 cut(s) 210
Cfr42I CCGCGG 1 cut(s) 63
CseI GACGC 1 cut(s) 140
CviAII CATG 3 cut(s) 43, 55, 241
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 57, 237
Eco24I GRGCYC 1 cut(s) 160
EcoT38I GRGCYC 1 cut(s) 160
FaeI CATG 3 cut(s) 46, 58, 244
FaiI YATR 5 cut(s) 44, 56, 191, 193, 242
FalI AAGNNNNNCTT 1 cut(s) 31
FatI CATG 3 cut(s) 42, 54, 240
FauNDI CATATG 1 cut(s) 191
Fnu4HI GCNGC 4 cut(s) 60, 135, 138, 281
FokI GGATG 1 cut(s) 200
FriOI GRGCYC 1 cut(s) 160
Fsp4HI GCNGC 4 cut(s) 60, 135, 138, 281
FspBI CTAG 1 cut(s) 270
GluI GCNGC 4 cut(s) 60, 135, 138, 281
HaeIII GGCC 2 cut(s) 59, 239
HapII CCGG 2 cut(s) 113, 153
HgaI GACGC 1 cut(s) 140
Hin1II CATG 3 cut(s) 46, 58, 244
HinfI GANTC 1 cut(s) 311
HpaII CCGG 2 cut(s) 113, 153
Hpy188I TCNGA 2 cut(s) 130, 253
Hpy99I CGWCG 2 cut(s) 35, 134
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 42, 164, 170
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 95, 209, 289
Hsp92II CATG 3 cut(s) 46, 58, 244
KspI CCGCGG 1 cut(s) 63
LmnI GCTCC 4 cut(s) 121, 145, 163, 321
LpnPI CCDG 7 cut(s) 84, 108, 120, 126, 166, 174, 180
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 270
MaeIII GTNAC 1 cut(s) 194
MbiI CCGCTC 1 cut(s) 140
MboII GAAGA 2 cut(s) 16, 19
MhlI GDGCHC 4 cut(s) 106, 160, 205, 294
MlyI GAGTC 1 cut(s) 305
MmeI TCCRAC 1 cut(s) 153
MnlI CCTC 1 cut(s) 187
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 2 cut(s) 113, 153
MspR9I CCNGG 2 cut(s) 113, 154
MvnI CGCG 1 cut(s) 62
MwoI GCNNNNNNNGC 4 cut(s) 56, 95, 209, 289
NciI CCSGG 2 cut(s) 113, 154
NdeI CATATG 1 cut(s) 191
NlaIII CATG 3 cut(s) 46, 58, 244
NlaIV GGNNCC 4 cut(s) 103, 117, 127, 159
NmeAIII GCCGAG 2 cut(s) 184, 215
NmuCI GTSAC 1 cut(s) 194
PaqCI CACCTGC 1 cut(s) 175
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PkrI GCNGC 4 cut(s) 61, 136, 139, 282
PleI GAGTC 1 cut(s) 305
PpsI GAGTC 1 cut(s) 305
PshAI GACNNNNGTC 1 cut(s) 50
PspN4I GGNNCC 4 cut(s) 103, 117, 127, 159
SacII CCGCGG 1 cut(s) 63
SatI GCNGC 4 cut(s) 60, 135, 138, 281
SchI GAGTC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 113, 154
SduI GDGCHC 4 cut(s) 106, 160, 205, 294
SetI ASST 5 cut(s) 100, 127, 169, 233, 271
Sfr303I CCGCGG 1 cut(s) 63
SgrBI CCGCGG 1 cut(s) 63
SsiI CCGC 5 cut(s) 48, 60, 62, 138, 281
SspMI CTAG 1 cut(s) 270
StyD4I CCNGG 2 cut(s) 111, 152
TaaI ACNGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 294
TauI GCSGC 3 cut(s) 62, 140, 283
TscAI CASTG 1 cut(s) 203
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 194
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 203
XspI CTAG 1 cut(s) 270
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.