Rroxscaffold_7G00166290

Belongs to the universal ribosomal protein uS3 family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
7814217 .. 7818336
4120 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00166290.1

Sequence Viewer

Length: 210 bp
ATGGCTTGCTATGGTGTATTGAGATTTGTCATGGAAAGTGGTGCAAAGGGATGCGAGGTAATTGTGAGGGTTCTTGAGGGACCGAGGGAGTTAGAGAAGTGTGAGGTGGAGTGGAGGACTAGCGGCAGCGGGAGTGGTAATAGGAATGCAGTTGACAAGGAGGCCAGTTTTGGCGCATGCGTATCTTACCTAGTTGGCGGTCCCTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

69

Amino Acids

7.39

Weight (kDa)

5.32

Isoelectric Point (pI)

19.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021541)

Species Orthologous Gene IDs
rosa_laevigata RLG00000011211 RLG00000036486 RLG00000036670
rosa_multiflora Rmu_sc0000407.1_g000002
rosa_roxburghii Rroxscaffold_7G00166290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 123, 129, 198
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 126
AspLEI GCGC 1 cut(s) 176
AspS9I GGNCC 2 cut(s) 80, 200
AvaII GGWCC 2 cut(s) 80, 200
BbvI GCAGC 1 cut(s) 138
BfaI CTAG 3 cut(s) 120, 191, 208
BisI GCNGC 2 cut(s) 124, 127
BlsI GCNGC 2 cut(s) 125, 128
Bme18I GGWCC 2 cut(s) 80, 200
BmgT120I GGNCC 2 cut(s) 80, 200
BmiI GGNNCC 2 cut(s) 81, 202
BmsI GCATC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 83
Bse1I ACTGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 138
BshFI GGCC 1 cut(s) 164
BslFI GGGAC 2 cut(s) 93, 186
BsmFI GGGAC 2 cut(s) 93, 186
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 164
BspACI CCGC 3 cut(s) 123, 129, 198
BspANI GGCC 1 cut(s) 164
BspLI GGNNCC 2 cut(s) 81, 202
BsrI ACTGG 1 cut(s) 165
BssECI CCNNGG 1 cut(s) 83
BstC8I GCNNGC 2 cut(s) 7, 178
BstF5I GGATG 1 cut(s) 56
BstHHI GCGC 1 cut(s) 176
BstNSI RCATGY 1 cut(s) 180
BstV1I GCAGC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 164
BtsCI GGATG 1 cut(s) 56
Cac8I GCNNGC 2 cut(s) 7, 178
CfoI GCGC 1 cut(s) 176
Cfr13I GGNCC 2 cut(s) 80, 200
CviAII CATG 2 cut(s) 31, 177
CviJI RGCY 2 cut(s) 5, 164
CviKI_1 RGCY 2 cut(s) 5, 164
Eco47I GGWCC 2 cut(s) 80, 200
FaeI CATG 2 cut(s) 34, 180
FaiI YATR 3 cut(s) 12, 32, 178
FaqI GGGAC 2 cut(s) 93, 186
FatI CATG 2 cut(s) 30, 176
FauI CCCGC 1 cut(s) 122
Fnu4HI GCNGC 2 cut(s) 124, 127
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 124, 127
FspBI CTAG 3 cut(s) 120, 191, 208
GlaI GCGC 1 cut(s) 175
GluI GCNGC 2 cut(s) 124, 127
HaeIII GGCC 1 cut(s) 164
HhaI GCGC 1 cut(s) 176
Hin1II CATG 2 cut(s) 34, 180
Hin6I GCGC 1 cut(s) 174
HinP1I GCGC 1 cut(s) 174
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 1 cut(s) 74
Hpy8I GTNNAC 1 cut(s) 154
HpyCH4V TGCA 2 cut(s) 44, 149
Hsp92II CATG 2 cut(s) 34, 180
HspAI GCGC 1 cut(s) 174
LpnPI CCDG 1 cut(s) 178
Lsp1109I GCAGC 1 cut(s) 138
LweI GCATC 1 cut(s) 41
MaeI CTAG 3 cut(s) 120, 191, 208
MluCI AATT 1 cut(s) 60
MnlI CCTC 7 cut(s) 49, 60, 70, 78, 97, 108, 154
MspA1I CMGCKG 1 cut(s) 129
Mva1269I GAATGC 1 cut(s) 151
NlaIII CATG 2 cut(s) 34, 180
NlaIV GGNNCC 2 cut(s) 81, 202
NspI RCATGY 1 cut(s) 180
PaeI GCATGC 1 cut(s) 180
PctI GAATGC 1 cut(s) 151
PkrI GCNGC 2 cut(s) 125, 128
PspN4I GGNNCC 2 cut(s) 81, 202
PspPI GGNCC 2 cut(s) 80, 200
SatI GCNGC 2 cut(s) 124, 127
Sau96I GGNCC 2 cut(s) 80, 200
SetI ASST 3 cut(s) 60, 108, 192
SfaNI GCATC 1 cut(s) 41
SinI GGWCC 2 cut(s) 80, 200
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
SphI GCATGC 1 cut(s) 180
Sse9I AATT 1 cut(s) 60
SsiI CCGC 3 cut(s) 123, 129, 198
SspMI CTAG 3 cut(s) 120, 191, 208
TaqII GACCGA 1 cut(s) 97
TasI AATT 1 cut(s) 60
TauI GCSGC 1 cut(s) 126
TseI GCWGC 1 cut(s) 126
VpaK11BI GGWCC 2 cut(s) 80, 200
XceI RCATGY 1 cut(s) 180
XspI CTAG 3 cut(s) 120, 191, 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.