RLG00000011631

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0021341
Physical Location & Seq
Forward (+)
11188999 .. 11190099
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011631

Sequence Viewer

Length: 525 bp
ATGGGCCATAGTGATTTCCACATCCAAGAACCAACTGAAACTACAGTCAACTATGAAAACACTACCGGAAGATTGGTATCAACTATAAAAGAAAGAGTAGTCGACTTTACCATAGCATTTGAGACAACTTCCTCTTCTTCTAGCTTAAGAAAGCTGCACAATATCATCAATGGCCTGGTTCAGCAGCACATCAAGGATCAGCCCCTCAACTTCCACATAGATCTCTTCGATTTCTTCTCGAAGAGCTCCTCGGCAGGGTTGCATCACCCTCGTGGATCAGCAGGGTTGCATCACCACCGTCATCGACGATCAGATTTGGGCCTCCGCCGAGACCCCAGTGCAGATCACACCTCCGATCTTCAACTCCTGGTGTACGGCATCACAGCGATTCTGAACCTCTCGCTCTGCGATGAGAACAAGGAGCTCATAGCTTCGTCGGGATCAATCAAGCCCTGGTCCGAGAGCTCGAGACCGGAAATCCAACCACGAAAGAGAAGCTCGAACCGGAACCCGAACAAATATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

175

Amino Acids

19.68

Weight (kDa)

8.79

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021341)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0098031
rosa_laevigata RLG00000011631 RLG00000012181
rosa_samantha Rh3BG285300 Rh7BG156700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 102
AciI CCGC 1 cut(s) 325
AclWI GGATC 3 cut(s) 204, 283, 448
AfaI GTAC 1 cut(s) 374
AfiI CCNNNNNNNGG 1 cut(s) 255
AflII CTTAAG 1 cut(s) 145
AgsI TTSAA 1 cut(s) 362
AjnI CCWGG 3 cut(s) 174, 366, 452
AleI CACNNNNGTG 1 cut(s) 270
AluBI AGCT 7 cut(s) 144, 154, 246, 424, 431, 465, 498
AluI AGCT 7 cut(s) 144, 154, 246, 424, 431, 465, 498
Alw21I GWGCWC 3 cut(s) 248, 426, 467
Alw26I GTCTC 3 cut(s) 116, 324, 463
AlwI GGATC 3 cut(s) 204, 283, 448
Ama87I CYCGRG 1 cut(s) 466
AoxI GGCC 3 cut(s) 4, 172, 319
ApeKI GCWGC 2 cut(s) 154, 184
AspS9I GGNCC 3 cut(s) 4, 319, 456
AsuHPI GGTGA 2 cut(s) 257, 284
AvaI CYCGRG 1 cut(s) 466
AvaII GGWCC 1 cut(s) 456
BanII GRGCYC 3 cut(s) 248, 426, 467
BauI CACGAG 1 cut(s) 270
Bbv12I GWGCWC 3 cut(s) 248, 426, 467
BbvI GCAGC 2 cut(s) 141, 196
BceAI ACGGC 1 cut(s) 391
BcgI CGANNNNNNTGC 2 cut(s) 251, 285
BciT130I CCWGG 3 cut(s) 176, 368, 454
BcoDI GTCTC 3 cut(s) 116, 324, 463
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 42
BfrI CTTAAG 1 cut(s) 145
BglII AGATCT 1 cut(s) 220
BisI GCNGC 2 cut(s) 155, 185
BlsI GCNGC 2 cut(s) 156, 186
Bme1390I CCNGG 3 cut(s) 176, 368, 454
Bme18I GGWCC 1 cut(s) 456
BmeT110I CYCGRG 1 cut(s) 466
BmgT120I GGNCC 3 cut(s) 4, 319, 456
BmiI GGNNCC 1 cut(s) 509
BmrFI CCNGG 3 cut(s) 176, 368, 454
BmrI ACTGGG 1 cut(s) 330
BmsI GCATC 3 cut(s) 271, 298, 387
BmuI ACTGGG 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 76
BsaI GGTCTC 2 cut(s) 324, 463
BsaJI CCNNGG 2 cut(s) 249, 452
BsaWI WCCGGW 3 cut(s) 65, 472, 504
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 336
Bse8I GATNNNNATC 1 cut(s) 76
BseBI CCWGG 3 cut(s) 176, 368, 454
BseDI CCNNGG 2 cut(s) 249, 452
BseGI GGATG 1 cut(s) 21
BseJI GATNNNNATC 1 cut(s) 76
BseLI CCNNNNNNNGG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 336
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 2 cut(s) 141, 196
BsgI GTGCAG 2 cut(s) 140, 360
BshFI GGCC 3 cut(s) 6, 174, 321
BsiHKAI GWGCWC 3 cut(s) 248, 426, 467
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 3 cut(s) 66, 473, 505
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 3 cut(s) 116, 324, 463
BsnI GGCC 3 cut(s) 6, 174, 321
Bso31I GGTCTC 2 cut(s) 324, 463
BsoBI CYCGRG 1 cut(s) 466
Bsp1286I GDGCHC 3 cut(s) 248, 426, 467
Bsp143I GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
BspACI CCGC 1 cut(s) 325
BspANI GGCC 3 cut(s) 6, 174, 321
BspLI GGNNCC 1 cut(s) 509
BspPI GGATC 3 cut(s) 204, 283, 448
BspQI GCTCTTC 1 cut(s) 236
BspTI CTTAAG 1 cut(s) 145
BspTNI GGTCTC 2 cut(s) 324, 463
BsrI ACTGG 1 cut(s) 336
BssECI CCNNGG 2 cut(s) 249, 452
BssMI GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 3 cut(s) 176, 368, 454
Bst4CI ACNGT 2 cut(s) 46, 299
Bst6I CTCTTC 3 cut(s) 139, 230, 236
BstAFI CTTAAG 1 cut(s) 145
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 7 cut(s) 199, 223, 278, 311, 346, 358, 443
BstMAI GTCTC 3 cut(s) 116, 324, 463
BstMBI GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
BstNI CCWGG 3 cut(s) 176, 368, 454
BstSCI CCNGG 3 cut(s) 174, 366, 452
BstSFI CTRYAG 1 cut(s) 42
BstV1I GCAGC 2 cut(s) 141, 196
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 6, 174, 321
BtgZI GCGATG 1 cut(s) 423
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 343
Cfr13I GGNCC 3 cut(s) 4, 319, 456
Csp6I GTAC 1 cut(s) 373
CviQI GTAC 1 cut(s) 373
DpnI GATC 7 cut(s) 198, 222, 277, 310, 345, 357, 442
DpnII GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
Eam1104I CTCTTC 3 cut(s) 139, 230, 236
EarI CTCTTC 3 cut(s) 139, 230, 236
EciI GGCGGA 1 cut(s) 314
Ecl136II GAGCTC 3 cut(s) 246, 424, 465
Eco24I GRGCYC 3 cut(s) 248, 426, 467
Eco31I GGTCTC 2 cut(s) 324, 463
Eco47I GGWCC 1 cut(s) 456
Eco53kI GAGCTC 3 cut(s) 246, 424, 465
Eco88I CYCGRG 1 cut(s) 466
EcoICRI GAGCTC 3 cut(s) 246, 424, 465
EcoRII CCWGG 3 cut(s) 174, 366, 452
EcoT38I GRGCYC 3 cut(s) 248, 426, 467
FaiI YATR 6 cut(s) 9, 54, 86, 113, 218, 428
FblI GTMKAC 1 cut(s) 102
Fnu4HI GCNGC 2 cut(s) 155, 185
FokI GGATG 1 cut(s) 8
FriOI GRGCYC 3 cut(s) 248, 426, 467
Fsp4HI GCNGC 2 cut(s) 155, 185
FspBI CTAG 1 cut(s) 141
GluI GCNGC 2 cut(s) 155, 185
HaeIII GGCC 3 cut(s) 6, 174, 321
HapII CCGG 3 cut(s) 66, 473, 505
HincII GTYRAC 2 cut(s) 49, 103
HindII GTYRAC 2 cut(s) 49, 103
HinfI GANTC 1 cut(s) 388
HpaII CCGG 3 cut(s) 66, 473, 505
HphI GGTGA 2 cut(s) 257, 284
Hpy166II GTNNAC 3 cut(s) 49, 103, 373
Hpy188I TCNGA 4 cut(s) 313, 355, 393, 460
Hpy188III TCNNGA 3 cut(s) 238, 438, 468
Hpy8I GTNNAC 3 cut(s) 49, 103, 373
Hpy99I CGWCG 2 cut(s) 309, 439
HpyCH4III ACNGT 2 cut(s) 46, 299
HpyCH4V TGCA 4 cut(s) 157, 262, 289, 341
Kzo9I GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 2 cut(s) 251, 421
Lsp1109I GCAGC 2 cut(s) 141, 196
LweI GCATC 3 cut(s) 271, 298, 387
MaeI CTAG 1 cut(s) 141
MalI GATC 7 cut(s) 198, 222, 277, 310, 345, 357, 442
MboI GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
MboII GAAGA 7 cut(s) 81, 126, 129, 217, 226, 253, 350
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 3 cut(s) 248, 426, 467
MmeI TCCRAC 1 cut(s) 505
MnlI CCTC 7 cut(s) 142, 215, 259, 279, 332, 361, 407
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 270
MspCI CTTAAG 1 cut(s) 145
MspI CCGG 3 cut(s) 66, 473, 505
MspR9I CCNGG 3 cut(s) 176, 368, 454
MvaI CCWGG 3 cut(s) 176, 368, 454
NdeII GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
NlaIV GGNNCC 1 cut(s) 509
NmeAIII GCCGAG 2 cut(s) 230, 353
OliI CACNNNNGTG 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 466
PciSI GCTCTTC 1 cut(s) 236
PfeI GAWTC 1 cut(s) 388
PkrI GCNGC 2 cut(s) 156, 186
Psp124BI GAGCTC 3 cut(s) 248, 426, 467
Psp6I CCWGG 3 cut(s) 174, 366, 452
PspGI CCWGG 3 cut(s) 174, 366, 452
PspN4I GGNNCC 1 cut(s) 509
PspPI GGNCC 3 cut(s) 4, 319, 456
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 374
RsaNI GTAC 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 270
SacI GAGCTC 3 cut(s) 248, 426, 467
SalI GTCGAC 1 cut(s) 101
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 2 cut(s) 155, 185
Sau3AI GATC 7 cut(s) 196, 220, 275, 308, 343, 355, 440
Sau96I GGNCC 3 cut(s) 4, 319, 456
ScrFI CCNGG 3 cut(s) 176, 368, 454
SduI GDGCHC 3 cut(s) 248, 426, 467
SetI ASST 9 cut(s) 146, 156, 248, 353, 399, 426, 433, 467, 500
SfaNI GCATC 3 cut(s) 271, 298, 387
SfcI CTRYAG 1 cut(s) 42
Sfr274I CTCGAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 456
SlaI CTCGAG 1 cut(s) 466
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 145, 466
SmoI CTYRAG 2 cut(s) 145, 466
SsiI CCGC 1 cut(s) 325
SspI AATATT 1 cut(s) 521
SspMI CTAG 1 cut(s) 141
SstI GAGCTC 3 cut(s) 248, 426, 467
StyD4I CCNGG 3 cut(s) 174, 366, 452
TaaI ACNGT 2 cut(s) 46, 299
TaqI TCGA 6 cut(s) 102, 228, 239, 304, 467, 500
TfiI GAWTC 1 cut(s) 388
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TscAI CASTG 1 cut(s) 343
TseI GCWGC 2 cut(s) 154, 184
TspDTI ATGAA 1 cut(s) 69
TspRI CASTG 1 cut(s) 343
Vha464I CTTAAG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 456
XhoI CTCGAG 1 cut(s) 466
XmiI GTMKAC 1 cut(s) 102
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.