RLG00000012181

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0021341
Physical Location & Seq
Reverse (-)
16035174 .. 16035846
673 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012181

Sequence Viewer

Length: 537 bp
ATGTCTATTTCTCTAGGGTGCGGGGGACAAGCAATTAAATTTTCCAGTTGCTGCTTGCTGCAGCCACAGCAAAACCTGTTTGAGACAACTTCCTCGTCTTCAAGCTTAAGAAAGCTGCACAATATCATCAATGGCCTGGTTCAGCAGCACATCAAGGATCAACCCCCCAACTTCCACACAGATCTCTTCGATTTCTTCTCGAAGAGCTCTTCGGCCTTACACCCTAGTGGATCAGCAGGGTTGCATCTGGGCCTCTGCCGGGACCCCAGTGCAGATCGCACCTCCGATCTCCAACTCCCGGTGTACGGCGTCACTACGATTCTGAACCTCTCGCTCTGCGACGAGAACAAGGAGCTCATAGCTTCGTCGGGATCAATCAAGCCCTGGTCGGAGCGCTCGAGACCGGAAATCCAACCACGAAAGAGAAGCTCAAACTGGAACCCGAACAAATATCAGATCGGAGCAATGCAAATTATGCCGGCAACGGAGGAGACCAAAAACGAAGGTTTTGATATGAGAAAGGATCTTTGGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Arm

Protein Analysis

179

Amino Acids

19.79

Weight (kDa)

7.67

Isoelectric Point (pI)

66.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021341)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0098031
rosa_laevigata RLG00000011631 RLG00000012181
rosa_samantha Rh3BG285300 Rh7BG156700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 21
AclWI GGATC 4 cut(s) 165, 238, 379, 531
AcsI RAATTY 1 cut(s) 38
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 1 cut(s) 305
AfeI AGCGCT 1 cut(s) 395
AfiI CCNNNNNNNGG 3 cut(s) 259, 298, 305
AflII CTTAAG 1 cut(s) 106
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 2 cut(s) 135, 383
AjuI GAANNNNNNNTTGG 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 225
AluBI AGCT 6 cut(s) 105, 115, 207, 355, 362, 429
AluI AGCT 6 cut(s) 105, 115, 207, 355, 362, 429
Alw21I GWGCWC 2 cut(s) 209, 357
Alw26I GTCTC 3 cut(s) 77, 394, 485
AlwI GGATC 4 cut(s) 165, 238, 379, 531
AlwNI CAGNNNCTG 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 397
Aor51HI AGCGCT 1 cut(s) 395
AoxI GGCC 3 cut(s) 133, 213, 250
ApeKI GCWGC 5 cut(s) 51, 58, 61, 115, 145
ApoI RAATTY 1 cut(s) 38
AspLEI GCGC 1 cut(s) 396
AspS9I GGNCC 2 cut(s) 250, 262
AsuC2I CCSGG 2 cut(s) 260, 299
AvaI CYCGRG 1 cut(s) 397
AvaII GGWCC 1 cut(s) 262
BanII GRGCYC 2 cut(s) 209, 357
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 2 cut(s) 209, 357
BbvI GCAGC 5 cut(s) 38, 45, 73, 102, 157
BceAI ACGGC 1 cut(s) 322
BciT130I CCWGG 2 cut(s) 137, 385
BcnI CCSGG 2 cut(s) 260, 299
BcoDI GTCTC 3 cut(s) 77, 394, 485
BfaI CTAG 2 cut(s) 14, 225
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 397
BfrI CTTAAG 1 cut(s) 106
BglII AGATCT 1 cut(s) 181
BisI GCNGC 5 cut(s) 52, 59, 62, 116, 146
BlsI GCNGC 5 cut(s) 53, 60, 63, 117, 147
Bme1390I CCNGG 4 cut(s) 137, 260, 299, 385
Bme18I GGWCC 1 cut(s) 262
BmeT110I CYCGRG 1 cut(s) 397
BmgT120I GGNCC 2 cut(s) 250, 262
BmiI GGNNCC 3 cut(s) 263, 264, 440
BmrFI CCNGG 4 cut(s) 137, 260, 299, 385
BmrI ACTGGG 1 cut(s) 261
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 261
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 2 cut(s) 260, 299
BsaHI GRCGYC 1 cut(s) 309
BsaI GGTCTC 2 cut(s) 394, 485
BsaJI CCNNGG 1 cut(s) 383
BsaWI WCCGGW 1 cut(s) 403
Bsc4I CCNNNNNNNGG 3 cut(s) 259, 298, 305
Bse118I RCCGGY 1 cut(s) 478
Bse1I ACTGG 3 cut(s) 45, 267, 440
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 2 cut(s) 137, 385
BseDI CCNNGG 1 cut(s) 383
BseLI CCNNNNNNNGG 3 cut(s) 259, 298, 305
BseMI GCAATG 1 cut(s) 471
BseNI ACTGG 3 cut(s) 45, 267, 440
BseRI GAGGAG 1 cut(s) 503
BseXI GCAGC 5 cut(s) 38, 45, 73, 102, 157
BsgI GTGCAG 2 cut(s) 101, 291
BshFI GGCC 3 cut(s) 135, 215, 252
BsiHKAI GWGCWC 2 cut(s) 209, 357
BsiHKCI CYCGRG 1 cut(s) 397
BsiSI CCGG 4 cut(s) 259, 299, 404, 479
BslFI GGGAC 2 cut(s) 39, 275
BslI CCNNNNNNNGG 3 cut(s) 259, 298, 305
BsmAI GTCTC 3 cut(s) 77, 394, 485
BsmFI GGGAC 2 cut(s) 39, 275
BsnI GGCC 3 cut(s) 135, 215, 252
Bso31I GGTCTC 2 cut(s) 394, 485
BsoBI CYCGRG 1 cut(s) 397
Bsp1286I GDGCHC 2 cut(s) 209, 357
Bsp143I GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
BspACI CCGC 1 cut(s) 21
BspANI GGCC 3 cut(s) 135, 215, 252
BspLI GGNNCC 3 cut(s) 263, 264, 440
BspMAI CTGCAG 1 cut(s) 63
BspPI GGATC 4 cut(s) 165, 238, 379, 531
BspQI GCTCTTC 2 cut(s) 197, 214
BspTI CTTAAG 1 cut(s) 106
BspTNI GGTCTC 2 cut(s) 394, 485
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 478
BsrI ACTGG 3 cut(s) 45, 267, 440
BssAI RCCGGY 1 cut(s) 478
BssECI CCNNGG 1 cut(s) 383
BssMI GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
BssNI GRCGYC 1 cut(s) 309
Bst2UI CCWGG 2 cut(s) 137, 385
Bst6I CTCTTC 3 cut(s) 191, 197, 214
BstACI GRCGYC 1 cut(s) 309
BstAFI CTTAAG 1 cut(s) 106
BstAPI GCANNNNNTGC 1 cut(s) 475
BstC8I GCNNGC 2 cut(s) 56, 480
BstH2I RGCGCY 1 cut(s) 397
BstHHI GCGC 1 cut(s) 396
BstKTI GATC 8 cut(s) 160, 184, 233, 277, 289, 374, 459, 526
BstMAI GTCTC 3 cut(s) 77, 394, 485
BstMBI GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
BstMWI GCNNNNNNNGC 2 cut(s) 67, 475
BstNI CCWGG 2 cut(s) 137, 385
BstSCI CCNGG 4 cut(s) 135, 258, 297, 383
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 5 cut(s) 38, 45, 73, 102, 157
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 2 cut(s) 181, 523
BstYI RGATCY 2 cut(s) 181, 523
BsuRI GGCC 3 cut(s) 135, 215, 252
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 2 cut(s) 56, 480
CaiI CAGNNNCTG 1 cut(s) 51
CfoI GCGC 1 cut(s) 396
Cfr10I RCCGGY 1 cut(s) 478
Cfr13I GGNCC 2 cut(s) 250, 262
CseI GACGC 1 cut(s) 298
Csp6I GTAC 1 cut(s) 304
CviQI GTAC 1 cut(s) 304
DpnI GATC 8 cut(s) 159, 183, 232, 276, 288, 373, 458, 525
DpnII GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
Eam1104I CTCTTC 3 cut(s) 191, 197, 214
EarI CTCTTC 3 cut(s) 191, 197, 214
Ecl136II GAGCTC 2 cut(s) 207, 355
Eco24I GRGCYC 2 cut(s) 209, 357
Eco31I GGTCTC 2 cut(s) 394, 485
Eco47I GGWCC 1 cut(s) 262
Eco47III AGCGCT 1 cut(s) 395
Eco53kI GAGCTC 2 cut(s) 207, 355
Eco88I CYCGRG 1 cut(s) 397
EcoICRI GAGCTC 2 cut(s) 207, 355
EcoO109I RGGNCCY 1 cut(s) 262
EcoRII CCWGG 2 cut(s) 135, 383
EcoT38I GRGCYC 2 cut(s) 209, 357
FaiI YATR 4 cut(s) 359, 476, 515, 535
FaqI GGGAC 2 cut(s) 39, 275
FauI CCCGC 1 cut(s) 14
Fnu4HI GCNGC 5 cut(s) 52, 59, 62, 116, 146
FriOI GRGCYC 2 cut(s) 209, 357
Fsp4HI GCNGC 5 cut(s) 52, 59, 62, 116, 146
FspBI CTAG 2 cut(s) 14, 225
GlaI GCGC 1 cut(s) 395
GluI GCNGC 5 cut(s) 52, 59, 62, 116, 146
HaeII RGCGCY 1 cut(s) 397
HaeIII GGCC 3 cut(s) 135, 215, 252
HapII CCGG 4 cut(s) 259, 299, 404, 479
HgaI GACGC 1 cut(s) 298
HhaI GCGC 1 cut(s) 396
Hin1I GRCGYC 1 cut(s) 309
Hin6I GCGC 1 cut(s) 394
HinP1I GCGC 1 cut(s) 394
HindIII AAGCTT 1 cut(s) 103
HinfI GANTC 1 cut(s) 319
HpaII CCGG 4 cut(s) 259, 299, 404, 479
Hpy166II GTNNAC 1 cut(s) 304
Hpy188I TCNGA 5 cut(s) 286, 324, 391, 456, 461
Hpy188III TCNNGA 3 cut(s) 199, 369, 399
Hpy8I GTNNAC 1 cut(s) 304
Hpy99I CGWCG 2 cut(s) 344, 370
HpyAV CCTTC 1 cut(s) 497
HpyCH4V TGCA 5 cut(s) 61, 118, 244, 272, 469
HpyF10VI GCNNNNNNNGC 2 cut(s) 67, 475
Hsp92I GRCGYC 1 cut(s) 309
HspAI GCGC 1 cut(s) 394
KflI GGGWCCC 1 cut(s) 262
KroI GCCGGC 1 cut(s) 478
KroNI GCCGGC 1 cut(s) 480
Kzo9I GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
LguI GCTCTTC 2 cut(s) 197, 214
LmnI GCTCC 3 cut(s) 352, 391, 461
Lsp1109I GCAGC 5 cut(s) 38, 45, 73, 102, 157
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 14, 225
MaeIII GTNAC 1 cut(s) 310
MalI GATC 8 cut(s) 159, 183, 232, 276, 288, 373, 458, 525
MboI GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
MboII GAAGA 5 cut(s) 90, 178, 187, 201, 214
MflI RGATCY 2 cut(s) 181, 523
MhlI GDGCHC 2 cut(s) 209, 357
MluCI AATT 3 cut(s) 33, 38, 471
MmeI TCCRAC 3 cut(s) 316, 369, 436
MnlI CCTC 5 cut(s) 103, 263, 292, 338, 481
MroNI GCCGGC 1 cut(s) 478
MseI TTAA 2 cut(s) 36, 107
MslI CAYNNNNRTG 1 cut(s) 225
MspCI CTTAAG 1 cut(s) 106
MspI CCGG 4 cut(s) 259, 299, 404, 479
MspR9I CCNGG 4 cut(s) 137, 260, 299, 385
MvaI CCWGG 2 cut(s) 137, 385
MwoI GCNNNNNNNGC 2 cut(s) 67, 475
NaeI GCCGGC 1 cut(s) 480
NciI CCSGG 2 cut(s) 260, 299
NdeII GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
NgoMIV GCCGGC 1 cut(s) 478
NlaIV GGNNCC 3 cut(s) 263, 264, 440
NmuCI GTSAC 1 cut(s) 310
OliI CACNNNNGTG 1 cut(s) 225
PaeR7I CTCGAG 1 cut(s) 397
PciSI GCTCTTC 2 cut(s) 197, 214
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 480
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 5 cut(s) 53, 60, 63, 117, 147
PpuMI RGGWCCY 1 cut(s) 262
Psp124BI GAGCTC 2 cut(s) 209, 357
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 135, 383
PspGI CCWGG 2 cut(s) 135, 383
PspN4I GGNNCC 3 cut(s) 263, 264, 440
PspPI GGNCC 2 cut(s) 250, 262
PspPPI RGGWCCY 1 cut(s) 262
PstI CTGCAG 1 cut(s) 63
PstNI CAGNNNCTG 1 cut(s) 51
PsuI RGATCY 2 cut(s) 181, 523
RsaI GTAC 1 cut(s) 305
RsaNI GTAC 1 cut(s) 304
RseI CAYNNNNRTG 1 cut(s) 225
SacI GAGCTC 2 cut(s) 209, 357
SapI GCTCTTC 2 cut(s) 197, 214
SaqAI TTAA 2 cut(s) 36, 107
SatI GCNGC 5 cut(s) 52, 59, 62, 116, 146
Sau3AI GATC 8 cut(s) 157, 181, 230, 274, 286, 371, 456, 523
Sau96I GGNCC 2 cut(s) 250, 262
ScrFI CCNGG 4 cut(s) 137, 260, 299, 385
SduI GDGCHC 2 cut(s) 209, 357
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 59
Sfr274I CTCGAG 1 cut(s) 397
SinI GGWCC 1 cut(s) 262
SlaI CTCGAG 1 cut(s) 397
SmiMI CAYNNNNRTG 1 cut(s) 225
SmlI CTYRAG 2 cut(s) 106, 397
SmoI CTYRAG 2 cut(s) 106, 397
Sse9I AATT 3 cut(s) 33, 38, 471
SsiI CCGC 1 cut(s) 21
SspMI CTAG 2 cut(s) 14, 225
SstI GAGCTC 2 cut(s) 209, 357
StyD4I CCNGG 4 cut(s) 135, 258, 297, 383
TaqI TCGA 3 cut(s) 189, 200, 398
TasI AATT 3 cut(s) 33, 38, 471
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 2 cut(s) 36, 107
Tru9I TTAA 2 cut(s) 36, 107
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 5 cut(s) 51, 58, 61, 115, 145
Tsp45I GTSAC 1 cut(s) 310
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 274
Vha464I CTTAAG 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 262
XapI RAATTY 1 cut(s) 38
XhoI CTCGAG 1 cut(s) 397
XspI CTAG 2 cut(s) 14, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.