Rh7BG156700

Membrane-anchored ubiquitin-fold protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0021341
Physical Location & Seq
Reverse (-)
11704530 .. 11705486
957 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG156700.1

Sequence Viewer

Length: 423 bp
ATGGCAACCCAAGATTTGGTTGAGGTCAAATTCAGATTATCCGATGGCACCGACATAGGTCCACACAAGTATAGCCCAGCTGCTACTGTAGCATCACTCAAAGAGAAAATACTTACACAATGGCCCAAAGATTTCTTCGATTTCTTCTCGAAGAGCTCCTCGGCCTTACACCCTCGTGGATCAGCAGGGTTGCGTCACCGCCGTCATCGGCGATCAGATCTGGGCCTCCGCCGGGACCCCAGTGCAGATCGCGCCTCCGATCTCCAGCTCCCGGTGTACGGCGTCACGGAGATTCTGAACCTCTCACTCTGCGATGAGAACAAGGAGTTCATAGCTTCGTCGGGAGCAATCAAGCCTCTGGTCCAGGATCGGCGGGGGAGAGAGGCAGAGAGGTCATCATTGGTGGAGGAGGTGAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

140

Amino Acids

15.72

Weight (kDa)

9.2

Isoelectric Point (pI)

60.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 45 1.4e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021341)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0098031
rosa_laevigata RLG00000011631 RLG00000012181
rosa_samantha Rh3BG285300 Rh7BG156700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 199, 229, 373
AclWI GGATC 2 cut(s) 187, 375
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 4 cut(s) 80, 156, 268, 335
AluI AGCT 4 cut(s) 80, 156, 268, 335
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 187, 375
AoxI GGCC 3 cut(s) 122, 162, 223
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 5 cut(s) 59, 123, 223, 235, 361
AsuC2I CCSGG 2 cut(s) 233, 272
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 3 cut(s) 59, 235, 361
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 38
BceAI ACGGC 2 cut(s) 186, 295
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 233, 272
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 87
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 233, 272, 365
Bme18I GGWCC 3 cut(s) 59, 235, 361
BmgT120I GGNCC 5 cut(s) 59, 123, 223, 235, 361
BmiI GGNNCC 3 cut(s) 49, 236, 237
BmrFI CCNGG 3 cut(s) 233, 272, 365
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 101
BmuI ACTGGG 1 cut(s) 234
BoxI GACNNNNGTC 1 cut(s) 57
BpmI CTGGAG 1 cut(s) 248
BpuMI CCSGG 2 cut(s) 233, 272
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 148, 422
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 3 cut(s) 124, 164, 225
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 232, 272
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 3 cut(s) 124, 164, 225
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BspACI CCGC 3 cut(s) 199, 229, 373
BspANI GGCC 3 cut(s) 124, 164, 225
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 3 cut(s) 49, 236, 237
BspPI GGATC 2 cut(s) 187, 375
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 88, 420
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 282
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 6 cut(s) 182, 215, 220, 250, 262, 370
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BstMWI GCNNNNNNNGC 2 cut(s) 89, 251
BstNI CCWGG 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 231, 270, 363
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 3 cut(s) 124, 164, 225
BtgZI GCGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 5 cut(s) 59, 123, 223, 235, 361
CseI GACGC 2 cut(s) 182, 271
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 9 cut(s) 75, 80, 124, 156, 164, 225, 268, 335, 355
CviKI_1 RGCY 9 cut(s) 75, 80, 124, 156, 164, 225, 268, 335, 355
CviQI GTAC 1 cut(s) 277
DpnI GATC 6 cut(s) 181, 214, 219, 249, 261, 369
DpnII GATC 6 cut(s) 179, 212, 217, 247, 259, 367
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 3 cut(s) 59, 235, 361
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoO109I RGGNCCY 1 cut(s) 235
EcoRII CCWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 158
FaiI YATR 3 cut(s) 56, 72, 332
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 81
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 1 cut(s) 248
HaeIII GGCC 3 cut(s) 124, 164, 225
HapII CCGG 2 cut(s) 232, 272
HgaI GACGC 2 cut(s) 182, 271
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 1 cut(s) 292
HpaII CCGG 2 cut(s) 232, 272
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 62, 277
Hpy188I TCNGA 5 cut(s) 35, 43, 217, 259, 297
Hpy188III TCNNGA 2 cut(s) 148, 342
Hpy8I GTNNAC 2 cut(s) 62, 277
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 88, 420
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 251
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 1 cut(s) 252
KflI GGGWCCC 1 cut(s) 235
Kzo9I GATC 6 cut(s) 179, 212, 217, 247, 259, 367
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 161, 273, 344
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 194, 283
MalI GATC 6 cut(s) 181, 214, 219, 249, 261, 369
MboI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
MboII GAAGA 3 cut(s) 127, 136, 163
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 29
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 232, 272
MspR9I CCNGG 3 cut(s) 233, 272, 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 89, 251
NciI CCSGG 2 cut(s) 233, 272
NdeII GATC 6 cut(s) 179, 212, 217, 247, 259, 367
NlaIV GGNNCC 3 cut(s) 49, 236, 237
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 194, 283
OliI CACNNNNGTG 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 82
PpuMI RGGWCCY 1 cut(s) 235
PshAI GACNNNNGTC 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 158
Psp5II RGGWCCY 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 3 cut(s) 49, 236, 237
PspPI GGNCC 5 cut(s) 59, 123, 223, 235, 361
PspPPI RGGWCCY 1 cut(s) 235
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
Sau96I GGNCC 5 cut(s) 59, 123, 223, 235, 361
ScrFI CCNGG 3 cut(s) 233, 272, 365
SduI GDGCHC 1 cut(s) 158
SetI ASST 9 cut(s) 27, 61, 82, 158, 270, 303, 337, 395, 414
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 3 cut(s) 59, 235, 361
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 29
SsiI CCGC 3 cut(s) 199, 229, 373
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 231, 270, 363
TaaI ACNGT 2 cut(s) 88, 420
TaqI TCGA 2 cut(s) 138, 149
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 194, 283
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 194, 283
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 3 cut(s) 59, 235, 361
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.