Rh3BG285300

Membrane-anchored ubiquitin-fold protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0021341
Physical Location & Seq
Reverse (-)
28395181 .. 28396364
1184 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG285300.1

Sequence Viewer

Length: 423 bp
ATGGCAACCCAAGATTTGGTTGAGGTCAAATTCAGATTATCCGATGGCACCGACATAGGTCCACACAAGTATAGCCCAGCTGCTACTGTAGCATCACTCAAAGAGAAAATACTTACACAATGGCCCAAAGATTTCTTCGATTTCTTCTCGAAGAGCTCCTCGGCCTTACACCCTCGTGGATCAGCAGGGTTGCGTCACCGCCGTCATCGGCGATCAGATCTGGGCCTCCGCCGGGACTCCAGTGCAGATCGCGCCTCCGATCTCCAGCTCCCGGTGTACGGCGTCACGGAGATTCTGAACCTCTCACTCTGCGATGAGAACAAGGAGTTCATAGCTTCGTCGGGAGCAATCAAGCCTCTGGTCCAGGATCGGCGGGGGAGAGAGGCAGAGAGGTCATCATTGGTGGAGGAGGTGAGACTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Rad60-SLD_2

Protein Analysis

140

Amino Acids

15.71

Weight (kDa)

9.2

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD_2 PF13881 5 - 45 1.4e-13 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021341)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0098031
rosa_laevigata RLG00000011631 RLG00000012181
rosa_samantha Rh3BG285300 Rh7BG156700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 1 cut(s) 16
AccII CGCG 1 cut(s) 252
AciI CCGC 3 cut(s) 199, 229, 373
AclWI GGATC 2 cut(s) 187, 375
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 282
AfaI GTAC 1 cut(s) 278
AfiI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
AjnI CCWGG 1 cut(s) 363
AjuI GAANNNNNNNTTGG 2 cut(s) 119, 151
AleI CACNNNNGTG 1 cut(s) 174
AluBI AGCT 4 cut(s) 80, 156, 268, 335
AluI AGCT 4 cut(s) 80, 156, 268, 335
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 409
AlwI GGATC 2 cut(s) 187, 375
AoxI GGCC 3 cut(s) 122, 162, 223
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 29
AspLEI GCGC 1 cut(s) 254
AspS9I GGNCC 4 cut(s) 59, 123, 223, 361
AsuC2I CCSGG 2 cut(s) 233, 272
AsuHPI GGTGA 1 cut(s) 188
AvaII GGWCC 2 cut(s) 59, 361
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 1 cut(s) 158
BauI CACGAG 1 cut(s) 174
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 38
BceAI ACGGC 2 cut(s) 186, 295
BciT130I CCWGG 1 cut(s) 365
BcnI CCSGG 2 cut(s) 233, 272
BcoDI GTCTC 1 cut(s) 409
BfmI CTRYAG 1 cut(s) 87
BglII AGATCT 1 cut(s) 217
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
Bme1390I CCNGG 3 cut(s) 233, 272, 365
Bme18I GGWCC 2 cut(s) 59, 361
BmgT120I GGNCC 4 cut(s) 59, 123, 223, 361
BmiI GGNNCC 1 cut(s) 49
BmrFI CCNGG 3 cut(s) 233, 272, 365
BmsI GCATC 1 cut(s) 101
BoxI GACNNNNGTC 1 cut(s) 57
BpmI CTGGAG 2 cut(s) 223, 248
BpuMI CCSGG 2 cut(s) 233, 272
BsaHI GRCGYC 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 159
Bsc4I CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
Bse1I ACTGG 1 cut(s) 240
BseBI CCWGG 1 cut(s) 365
BseDI CCNNGG 1 cut(s) 159
BseLI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 2 cut(s) 148, 422
BseXI GCAGC 1 cut(s) 67
BseYI CCCAGC 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 264
Bsh1236I CGCG 1 cut(s) 252
BshFI GGCC 3 cut(s) 124, 164, 225
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 2 cut(s) 232, 272
BslFI GGGAC 1 cut(s) 248
BslI CCNNNNNNNGG 4 cut(s) 16, 232, 271, 278
BsmAI GTCTC 1 cut(s) 409
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 3 cut(s) 124, 164, 225
Bsp1286I GDGCHC 1 cut(s) 158
Bsp143I GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BspACI CCGC 3 cut(s) 199, 229, 373
BspANI GGCC 3 cut(s) 124, 164, 225
BspFNI CGCG 1 cut(s) 252
BspLI GGNNCC 1 cut(s) 49
BspPI GGATC 2 cut(s) 187, 375
BspQI GCTCTTC 1 cut(s) 146
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 240
BssECI CCNNGG 1 cut(s) 159
BssMI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BssNI GRCGYC 1 cut(s) 282
BssSI CACGAG 1 cut(s) 174
Bst2BI CACGAG 1 cut(s) 174
Bst2UI CCWGG 1 cut(s) 365
Bst4CI ACNGT 2 cut(s) 88, 420
Bst6I CTCTTC 1 cut(s) 146
BstACI GRCGYC 1 cut(s) 282
BstFNI CGCG 1 cut(s) 252
BstHHI GCGC 1 cut(s) 254
BstKTI GATC 6 cut(s) 182, 215, 220, 250, 262, 370
BstMAI GTCTC 1 cut(s) 409
BstMBI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
BstMWI GCNNNNNNNGC 2 cut(s) 89, 251
BstNI CCWGG 1 cut(s) 365
BstPAI GACNNNNGTC 1 cut(s) 57
BstSCI CCNGG 3 cut(s) 231, 270, 363
BstSFI CTRYAG 1 cut(s) 87
BstUI CGCG 1 cut(s) 252
BstV1I GCAGC 1 cut(s) 67
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BsuRI GGCC 3 cut(s) 124, 164, 225
BtgZI GCGATG 1 cut(s) 327
BtsIMutI CAGTG 1 cut(s) 247
CfoI GCGC 1 cut(s) 254
Cfr13I GGNCC 4 cut(s) 59, 123, 223, 361
CseI GACGC 2 cut(s) 182, 271
Csp6I GTAC 1 cut(s) 277
CviJI RGCY 9 cut(s) 75, 80, 124, 156, 164, 225, 268, 335, 355
CviKI_1 RGCY 9 cut(s) 75, 80, 124, 156, 164, 225, 268, 335, 355
CviQI GTAC 1 cut(s) 277
DpnI GATC 6 cut(s) 181, 214, 219, 249, 261, 369
DpnII GATC 6 cut(s) 179, 212, 217, 247, 259, 367
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 218
Ecl136II GAGCTC 1 cut(s) 156
Eco24I GRGCYC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 59, 361
Eco53kI GAGCTC 1 cut(s) 156
EcoICRI GAGCTC 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 363
EcoT38I GRGCYC 1 cut(s) 158
FaiI YATR 3 cut(s) 56, 72, 332
FaqI GGGAC 1 cut(s) 248
FauI CCCGC 1 cut(s) 366
Fnu4HI GCNGC 1 cut(s) 81
FriOI GRGCYC 1 cut(s) 158
Fsp4HI GCNGC 1 cut(s) 81
GlaI GCGC 1 cut(s) 253
GluI GCNGC 1 cut(s) 81
GsaI CCCAGC 1 cut(s) 80
GsuI CTGGAG 2 cut(s) 223, 248
HaeIII GGCC 3 cut(s) 124, 164, 225
HapII CCGG 2 cut(s) 232, 272
HgaI GACGC 2 cut(s) 182, 271
HhaI GCGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 252
HinP1I GCGC 1 cut(s) 252
HinfI GANTC 2 cut(s) 236, 292
HpaII CCGG 2 cut(s) 232, 272
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 2 cut(s) 62, 277
Hpy188I TCNGA 5 cut(s) 35, 43, 217, 259, 297
Hpy188III TCNNGA 2 cut(s) 148, 342
Hpy8I GTNNAC 2 cut(s) 62, 277
Hpy99I CGWCG 1 cut(s) 343
HpyCH4III ACNGT 2 cut(s) 88, 420
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 2 cut(s) 89, 251
Hsp92I GRCGYC 1 cut(s) 282
HspAI GCGC 1 cut(s) 252
Kzo9I GATC 6 cut(s) 179, 212, 217, 247, 259, 367
LguI GCTCTTC 1 cut(s) 146
LmnI GCTCC 3 cut(s) 161, 273, 344
Lsp1109I GCAGC 1 cut(s) 67
LweI GCATC 1 cut(s) 101
MaeIII GTNAC 2 cut(s) 194, 283
MalI GATC 6 cut(s) 181, 214, 219, 249, 261, 369
MboI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
MboII GAAGA 3 cut(s) 127, 136, 163
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 1 cut(s) 158
MluCI AATT 1 cut(s) 29
MlyI GAGTC 1 cut(s) 230
MslI CAYNNNNRTG 1 cut(s) 174
MspA1I CMGCKG 1 cut(s) 80
MspI CCGG 2 cut(s) 232, 272
MspR9I CCNGG 3 cut(s) 233, 272, 365
MvaI CCWGG 1 cut(s) 365
MvnI CGCG 1 cut(s) 252
MwoI GCNNNNNNNGC 2 cut(s) 89, 251
NciI CCSGG 2 cut(s) 233, 272
NdeII GATC 6 cut(s) 179, 212, 217, 247, 259, 367
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 140
NmuCI GTSAC 2 cut(s) 194, 283
OliI CACNNNNGTG 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 146
PfeI GAWTC 1 cut(s) 292
PflMI CCANNNNNTGG 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 363
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 230
PpsI GAGTC 1 cut(s) 230
PshAI GACNNNNGTC 1 cut(s) 57
Psp124BI GAGCTC 1 cut(s) 158
Psp6I CCWGG 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 76
PspGI CCWGG 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 49
PspPI GGNCC 4 cut(s) 59, 123, 223, 361
PsuI RGATCY 1 cut(s) 217
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 1 cut(s) 278
RsaNI GTAC 1 cut(s) 277
RseI CAYNNNNRTG 1 cut(s) 174
SacI GAGCTC 1 cut(s) 158
SapI GCTCTTC 1 cut(s) 146
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 6 cut(s) 179, 212, 217, 247, 259, 367
Sau96I GGNCC 4 cut(s) 59, 123, 223, 361
SchI GAGTC 1 cut(s) 230
ScrFI CCNGG 3 cut(s) 233, 272, 365
SduI GDGCHC 1 cut(s) 158
SetI ASST 9 cut(s) 27, 61, 82, 158, 270, 303, 337, 395, 414
SfaNI GCATC 1 cut(s) 101
SfcI CTRYAG 1 cut(s) 87
SinI GGWCC 2 cut(s) 59, 361
SmiMI CAYNNNNRTG 1 cut(s) 174
Sse9I AATT 1 cut(s) 29
SsiI CCGC 3 cut(s) 199, 229, 373
SstI GAGCTC 1 cut(s) 158
StyD4I CCNGG 3 cut(s) 231, 270, 363
TaaI ACNGT 2 cut(s) 88, 420
TaqI TCGA 2 cut(s) 138, 149
TasI AATT 1 cut(s) 29
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 247
TseFI GTSAC 2 cut(s) 194, 283
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 2 cut(s) 194, 283
TspDTI ATGAA 1 cut(s) 319
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 247
Van91I CCANNNNNTGG 1 cut(s) 16
VpaK11BI GGWCC 2 cut(s) 59, 361
XapI RAATTY 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.